DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0005464 dme-miR-iab-4as-3p 43808 gw auuUGCAUAUGA--CUUACAUAgg |:| ||||| | |||||| uauAUG-AUACUAAGUAUGUAUga 3 20 86 108 [dm3:4:670775-670797:-] 0.6220 136 0 -9.65 -0.2014 MIMAT0005465 dme-miR-954 43808 gw uguGUGUUGCGU-UGUGGGUcu || :|| || ||||||| acuCAAGACACACACACCCAaa 3 19 54 75 [dm3:4:670808-670829:-] 0.6220 141 0 -17.60 -0.1401 MIMAT0005509 dme-miR-991 43808 gw ugaaAGGUUUGAUGUUGAAAUu |:|:| |::|| |||| uaacUUCGAUAUGUAAGUUUAa 2 19 216 237 [dm3:4:670646-670667:-] 0.6338 126 0 -8.80 -0.1699 MIMAT0005025 dme-miR-1012 43808 gw gaUACCCCUU--UUAGAAACUGAUu || || | :: | ||||||| ccAUUGGUCAUUGGCCAUUGACUAu 2 22 18 42 [dm3:4:670841-670865:-] 0.6220 144 7 -10.00 -0.4930 MIMAT0011791 dme-miR-2283 43808 gw uaacagcauaaguacuAUAAAAg |||||| uguaugccuguagauuUAUUUUu 2 8 175 197 [dm3:4:670686-670708:-] 0.6338 120 6 -5.34 -0.1048 MIMAT0012196 dme-miR-2489 43808 gw ugacgUUUAUGUUGUAUGU-UAu | || ||||||||| || aaaaaACAUCCAACAUACAUAUg 2 18 252 274 [dm3:4:670609-670631:-] 0.5305 133 0 -12.37 -1.1691 MIMAT0012199 dme-miR-2492 43808 gw aaacuuucgagagcugUUUUGUa |||||| auuuaaccaauauaaaAAAACAu 2 8 238 260 [dm3:4:670623-670645:-] 0.6338 120 6 -4.45 -0.1936 MIMAT0012200 dme-miR-2493* 43808 gw accgacacacacacACACUCg |||||| aagcaagaccauguUGUGAGg 2 8 110 130 [dm3:4:670753-670773:-] 0.6220 120 6 -10.05 -0.1849 MIMAT0012211 dme-miR-2498 43808 gw uucaUUCUGCCCUUACGGUCAAa ||||: | | |||||| ----AAGAU-CAAUUACCAGUUc 2 20 1 18 [dm3:4:670865-670882:-] 0.6220 121 6 -9.47 -0.1527 MIMAT0005467 dme-miR-190 43808 gw guuggUUCUUAUA-GUU---UGUAUAga || || || ||| |||||| uauaaAAAAACAUCCAACAUACAUAUgu 3 20 248 275 [dm3:4:670608-670635:-] 0.5305 133 0 -10.10 -0.1187 MIMAT0005507 dme-miR-137 43808 gw gaUGCACAUAAGAGUUCGUUAu | || || :|:|| |||| guAAGUUUAAAUUUAACCAAUa 2 21 228 249 [dm3:4:670634-670655:-] 0.6338 128 0 -5.82 -0.3229 MIMAT0005519 dme-miR-999 43808 gw ucUGUGUCAGAAUGUCAAUUGu |:::| :||| | ||||| auAUGUAAGUUUAAAUUUAACc 2 21 224 245 [dm3:4:670638-670659:-] 0.6338 128 0 -4.63 -0.1266 MIMAT0005016 dme-miR-1003 43808 gw gacacuuauacauuuACACUCu |||||| aaagcaagaccauguUGUGAGg 2 8 109 130 [dm3:4:670753-670774:-] 0.6220 120 6 -12.75 -0.1798 MIMAT0005017 dme-miR-1004 43808 gw gacacucccuucacuACACUCu |||||| aaagcaagaccauguUGUGAGg 2 8 109 130 [dm3:4:670753-670774:-] 0.6220 120 6 -13.21 -0.1832 MIMAT0005024 dme-miR-1011 43808 gw gacgcucgcUAAACUUGGUUAUu |||| |||||||| uaaguuuaaAUUU-AACCAAUAu 2 15 229 250 [dm3:4:670633-670654:-] 0.6338 156 7 -9.00 -1.3232 MIMAT0005027 dme-miR-1014 43808 gw gacGUUUACUUUUA-CUUAAAa |:||||:| | |||||| agaCGAAUGGACUUAGAAUUUu 2 19 154 175 [dm3:4:670708-670729:-] 0.6279 130 6 -12.67 -0.9658

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score gw RAID00443431 dme-miR-1014-3p miRNA MIMAT0005027 gw mRNA 43808 Prediction 0.1828 gw RAID00755407 dme-miR-1011-3p miRNA MIMAT0005024 gw mRNA 43808 Prediction 0.2202 gw RAID00849806 dme-miR-1004-3p miRNA MIMAT0005017 gw mRNA 43808 Prediction 0.1828 gw RAID00973151 dme-miR-970-3p miRNA MIMAT0005486 gw mRNA 43808 Prediction 0.1828 gw RAID02293967 dme-miR-1003-3p miRNA MIMAT0005016 gw mRNA 43808 Prediction 0.1828 gw RAID02312746 dme-mir-307a miRNA MI0000418 gw mRNA 43808 Prediction 0.1828 gw RAID02730739 dme-miR-999-3p miRNA MIMAT0005519 gw mRNA 43808 Prediction 0.1828 gw RAID03181164 dme-miR-8-3p miRNA MIMAT0000113 gw mRNA 43808 Prediction 0.1828 gw RAID03308881 dme-miR-284-3p miRNA MIMAT0000348 gw mRNA 43808 Prediction 0.1828 gw RAID03323514 dme-miR-190-5p miRNA MIMAT0005467 gw mRNA 43808 Prediction 0.1828 gw RAID03355748 dme-miR-1012-3p miRNA MIMAT0005025 gw mRNA 43808 Prediction 0.1828 gw RAID03928745 dme-miR-137-3p miRNA MIMAT0005507 gw mRNA 43808 Prediction 0.1828