DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000363 dme-miR-288 35329 ik2 guACUUUACUUUAGCUGUACUUu | || || | ||||||| auUUAACUG-UCUAUACAUGAAa 2 22 227 248 [dm3:2L:20678998-20679019:+] 0.4597 143 7 -8.55 -1.0703 MIMAT0000364 dme-miR-289 35329 ik2 ucagcguccgagGUGAAUUUAUAAAu ::| :||||||| auaucaugaaagUGCAAGAAUAUUUu 2 15 7 32 [dm3:2L:20678778-20678803:+] 0.4606 142 7 -7.04 -0.4001 MIMAT0010206 dme-miR-995* 35329 ik2 gcGUCGAG-GGUGUAUU-AAGCCc |:|| | |:|| || ||||| auCGGCCCGGCGCAAAACUUCGGc 2 21 448 471 [dm3:2L:20679219-20679242:+] 0.6285 123 0 -18.08 -0.6288 MIMAT0005026 dme-miR-1013 35329 ik2 gcucaagCCGUAUGAAAAua | | |||||| aggauaaGUCUAACUUUUua 3 14 474 493 [dm3:2L:20679245-20679264:+] 0.6285 121 0 -4.26 -0.1445 MIMAT0011791 dme-miR-2283 35329 ik2 uaacagcaUAAGUAC-UAUAAAAg :| || | ||||||| ucaugaaaGUGCAAGAAUAUUUUa 2 16 10 33 [dm3:2L:20678781-20678804:+] 0.4606 146 7 -5.38 -0.5619 MIMAT0011791 dme-miR-2283 35329 ik2 uaaCAGCA--UAAGUACUAUAAAAg ||| | | |:|| |||||| uagGUCAUUAAAUUAU-UUAUUUUa 2 21 153 176 [dm3:2L:20678924-20678947:+] 0.4119 121 6 -4.39 -0.1313 MIMAT0012208 dme-miR-2497* 35329 ik2 uugUUGAUGUAAAACGUU-ACGAAUg :| |:|| | | :|| |||||| cuaGAAUGCACUGUUUAAUUGCUUAu 2 23 304 329 [dm3:2L:20679075-20679100:+] 0.4790 130 6 -8.61 -1.0614 MIMAT0012209 dme-miR-2497 35329 ik2 gacGUUUGUAACAUUUACAACa ::| : ||| :||||||| ugaUGACUCUUGCGAAUGUUGg 2 20 371 392 [dm3:2L:20679142-20679163:+] 0.6285 155 7 -10.79 -0.2054 MIMAT0012209 dme-miR-2497 35329 ik2 gaCGUUUGUAACAUUUACAAca |: |||| |||||||| aaGUUAACA--AUAAAUGUUua 3 21 50 69 [dm3:2L:20678821-20678840:+] 0.4570 137 0 -7.85 -0.1301 MIMAT0012210 dme-miR-2498* 35329 ik2 guUUUUAUUCGUAUUGUCGGAAAu |:||| | : || : |||||| caAGAAU-AUUUUAUUUGCCUUUa 2 23 21 43 [dm3:2L:20678792-20678814:+] 0.4606 128 6 -14.75 -0.1660 MIMAT0000389 dme-miR-31b 35329 ik2 gucgauAAGGC-UGUAGAACGgu || :| | :|||||| uuaaguUUAUGUAAGUCUUGCga 3 17 491 513 [dm3:2L:20679262-20679284:+] 0.6285 127 0 -14.02 -0.1043 MIMAT0000400 dme-miR-31a 35329 ik2 agUC-GAUACGGCUGUAGAACGgu || :||||: | :|||||| uaAGUUUAUGU--AAGUCUUGCga 3 22 492 513 [dm3:2L:20679263-20679284:+] 0.6285 133 0 -15.35 -0.1043 MIMAT0005493 dme-miR-977 35329 ik2 aaucuguugcacuUAUAGAgu |||||| uguuuacuuuuuuAUAUCUga 3 9 64 84 [dm3:2L:20678835-20678855:+] 0.4327 120 0 -4.90 -0.1885 MIMAT0005504 dme-miR-987 35329 ik2 guaguuAGGUCUGAU-AAAUGAAAu ||:| || | |||||||| acauucUCUAAACAAGUUUACUUUu 2 19 332 356 [dm3:2L:20679103-20679127:+] 0.4935 161 7 -12.37 -0.7906 MIMAT0005504 dme-miR-987 35329 ik2 guaGUUAGGUCUGAUAAAUGAAAu |||| | | |:|||||||| uaaCAAU--A-AAUGUUUACUUUu 2 22 54 74 [dm3:2L:20678825-20678845:+] 0.4420 156 7 -12.11 -1.0207 MIMAT0005504 dme-miR-987 35329 ik2 guaguuaggucugauAAAUGAAAu |||||||| aauauuuuauuugccUUUACUUUg 2 10 25 48 [dm3:2L:20678796-20678819:+] 0.4606 145 7 -7.79 -0.7607 MIMAT0005519 dme-miR-999 35329 ik2 ucuguGUCAGA-AUGUCAAUUGu :| |:| || ||||||| gccuuUACUUUGUA-AGUUAACa 2 18 37 58 [dm3:2L:20678808-20678829:+] 0.4570 146 7 -11.46 -1.2387 MIMAT0005520 dme-miR-1000 35329 ik2 ugacgacacuguccUGUUAUa |||||| uacuuuguaaguuaACAAUAa 2 8 42 62 [dm3:2L:20678813-20678833:+] 0.4570 120 6 -7.84 -0.2152 MIMAT0005027 dme-miR-1014 35329 ik2 gacguuuacuuuuACUUAAAa ||||||| acuuuuuuauaucUGAAUUUg 2 9 69 89 [dm3:2L:20678840-20678860:+] 0.4327 140 7 -3.11 -0.7315

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score IKKepsilon RAID00054205 dme-miR-284-3p miRNA MIMAT0000348 IKKepsilon mRNA 35329 Prediction 0.1828 IKKepsilon RAID00629081 dme-miR-977-3p miRNA MIMAT0005493 IKKepsilon mRNA 35329 Prediction 0.1828 IKKepsilon RAID01468161 dme-miR-1014-3p miRNA MIMAT0005027 IKKepsilon mRNA 35329 Prediction 0.2202 IKKepsilon RAID01790246 dme-miR-31a-5p miRNA MIMAT0000400 IKKepsilon mRNA 35329 Prediction 0.1828 IKKepsilon RAID02049040 dme-miR-190-5p miRNA MIMAT0005467 IKKepsilon mRNA 35329 Prediction 0.1828 IKKepsilon RAID02367931 dme-miR-987-5p miRNA MIMAT0005504 IKKepsilon mRNA 35329 Prediction 0.2202 IKKepsilon RAID02982106 dme-miR-1000-5p miRNA MIMAT0005520 IKKepsilon mRNA 35329 Prediction 0.2202 IKKepsilon RAID03635688 dme-miR-31b-5p miRNA MIMAT0000389 IKKepsilon mRNA 35329 Prediction 0.1828 IKKepsilon RAID03822902 dme-miR-999-3p miRNA MIMAT0005519 IKKepsilon mRNA 35329 Prediction 0.2202