DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000364 dme-miR-289 38652 Bre1 ucagcguccgaGGUGAAU--UUAUAAAu |:|| || ||||||| gcauauauuacCUACGUACUAAUAUUUg 2 16 112 139 [dm3:3L:5783506-5783533:-] 0.5646 150 7 -9.05 -0.6767 MIMAT0000364 dme-miR-289 38652 Bre1 ucagcGUCCGAGGUGAAUUUA-UAAAu || || : :|||||| |||| uaaauCAAACUAUUUUUAAAUGAUUUc 2 22 283 309 [dm3:3L:5783336-5783362:-] 0.5646 129 0 -6.76 -1.2542 MIMAT0005465 dme-miR-954 38652 Bre1 uguGUG-UUGCGUUGUGGGUCu ||| | ||| |||||||| cacCACUACCGC-ACACCCAGc 2 19 65 85 [dm3:3L:5783560-5783580:-] 0.5646 159 7 -24.72 -0.5422 MIMAT0005500 dme-miR-984 38652 Bre1 uuUAAG--GUUGGCAUA-AAUGGAgu |||| :| | ||| |||||| uuAUUCAUUAUGCAUAUAUUACCUac 3 22 101 126 [dm3:3L:5783519-5783544:-] 0.5646 135 0 -10.29 -0.1214 MIMAT0011787 dme-miR-2280* 38652 Bre1 agucaaucgaaccuuCAUUUAa |||||| uagcuucuaguuuuuGUAAAUc 2 8 267 288 [dm3:3L:5783357-5783378:-] 0.5646 120 6 -7.04 -0.2300 MIMAT0011791 dme-miR-2283 38652 Bre1 uaACAGCA-UAAGUACUAUAAAAg | |:|| | ||| |||||| guUUUUGUAAAUCAAACUAUUUUu 2 22 276 299 [dm3:3L:5783346-5783369:-] 0.5646 128 6 -5.94 -0.2107 MIMAT0012207 dme-miR-2496 38652 Bre1 auacgcACACA-CUCACGGGGCg ||| | | ||||||| accuauUGUUUAGCAUGCCCCG- 2 17 350 371 [dm3:3L:5783274-5783295:-] 0.4592 147 7 -14.76 -0.1148 MIMAT0012215 dme-miR-2500 38652 Bre1 gacUCCAGG-U--GUGUGU-UUUAGg | |||| | ||:||| ||||| gucAUGUCCUAUUCAUACACAAAUCc 2 20 27 52 [dm3:3L:5783593-5783618:-] 0.5646 125 0 -19.57 -0.4405 MIMAT0000348 dme-miR-284 38652 Bre1 guUAACGAC-CUUAGU----UCAACG---ACUGAAGu :|| :|| ||||| | || : |||:||| uaGUUUUUGUAAAUCAAACUAUUUUUAAAUGAUUUCa 2 28 274 310 [dm3:3L:5783335-5783371:-] 0.5646 128 0 -14.80 -0.1322 MIMAT0000407 dme-miR-315 38652 Bre1 cgAAAGACUCGUUGUUAGUUUu |||:| |:| ||||||| agUUUUU--GUA--AAUCAAAc 2 21 275 292 [dm3:3L:5783353-5783370:-] 0.5646 146 7 -7.65 -1.1607 MIMAT0005463 dme-miR-iab-4as-5p 38652 Bre1 gccAUAUGGAAGUCA--UAUGCAUu |||:| | :| | |||||| cauUAUGCAUAUAUUACCUACGUAc 2 21 106 130 [dm3:3L:5783515-5783539:-] 0.5646 123 6 -7.34 -0.1994 MIMAT0005469 dme-miR-956 38652 Bre1 uuACCUAAUCUCACCAGA-GCUUu | |:||| ||| |||| |||| auUUGGUUA-AGUAGUCUCCGAAu 2 22 135 157 [dm3:3L:5783488-5783510:-] 0.5646 135 0 -15.05 -0.9843 MIMAT0005472 dme-miR-375 38652 Bre1 auUGAAUUCGGUUUGCUUGUuu ||| || :: ||||||| aaACUAAA--UGUACGAACAcu 3 21 316 335 [dm3:3L:5783310-5783329:-] 0.5646 133 0 -11.73 -0.2354

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Bre1 RAID00139681 dme-miR-iab-8-5p miRNA MIMAT0005463 Bre1 mRNA 38652 Prediction 0.1828 Bre1 RAID00170244 dme-miR-956-3p miRNA MIMAT0005469 Bre1 mRNA 38652 Prediction 0.1828 Bre1 RAID00522085 dme-miR-305-5p miRNA MIMAT0000391 Bre1 mRNA 38652 Prediction 0.1828 Bre1 RAID01137535 dme-miR-375-3p miRNA MIMAT0005472 Bre1 mRNA 38652 Prediction 0.1828 Bre1 RAID02466804 dme-miR-303-5p miRNA MIMAT0000388 Bre1 mRNA 38652 Prediction 0.1828 Bre1 RAID02610788 dme-miR-315-5p miRNA MIMAT0000407 Bre1 mRNA 38652 Prediction 0.2381 Bre1 RAID02910748 dme-miR-284-3p miRNA MIMAT0000348 Bre1 mRNA 38652 Prediction 0.1828 Bre1 RAID03388845 dme-miR-954-5p miRNA MIMAT0005465 Bre1 mRNA 38652 Prediction 0.1828