DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 39505 flr cacguuugCUAAAAGUUG-UGu ||| |||||| || auaucaugGAUAUUCAACUACu 2 14 180 201 [dm3:3L:13409384-13409405:+] 0.5634 121 0 -9.33 -1.0110 MIMAT0000364 dme-miR-289 39505 flr ucagcGUCCGAGGUGAAUUUAUAAAu ||| :| ||:|||:|||||| ugcaaCAGUUUACAUUUAGAUAUUUa 2 22 79 104 [dm3:3L:13409283-13409308:+] 0.5339 165 6 -18.95 -0.1043 MIMAT0000364 dme-miR-289 39505 flr ucagcguccgaggugaauuUAUAAAu |||||| -augcgccggccgugaagcAUAUUUu 2 8 1 25 [dm3:3L:13409205-13409229:+] 0.5822 120 6 -13.24 -0.1178 MIMAT0005491 dme-miR-975 39505 flr uauguccuacauccUUCACAAAu |||||||| uaauuuuaagccaaAAGUGUUUg 2 10 148 170 [dm3:3L:13409352-13409374:+] 0.5634 145 7 -9.36 -0.9733 MIMAT0005494 dme-miR-978 39505 flr gacGUU--AAAUGCCGUGACCUgu ||| ||||: :|||||| gaaCAAUUUUUAUACUACUGGAac 3 20 234 257 [dm3:3L:13409438-13409461:+] 0.5634 138 0 -15.18 -0.1118 MIMAT0005499 dme-miR-983 39505 flr agUAAUCAAGCUUUGCAUAAUa || | || | :|||||| acAUAAAUU---AUUGUAUUAu 2 21 305 323 [dm3:3L:13409509-13409527:+] 0.5634 128 6 -7.05 -0.2096 MIMAT0005502 dme-miR-985 39505 flr acgggcugguaaccuUGUAAAc |||||| uaagugcaacaguuuACAUUUa 2 8 75 96 [dm3:3L:13409279-13409300:+] 0.5339 120 6 -6.55 -0.1090 MIMAT0011784 dme-miR-2279* 39505 flr uuaAAGUGUGUGUCUAUAAAUu ||:|||: :||||||||| cagUUUACAUUUAGAUAUUUAu 2 20 84 105 [dm3:3L:13409288-13409309:+] 0.5339 175 7 -16.47 -0.6035 MIMAT0011785 dme-miR-2279 39505 flr uuuauuuauagaagcGCACUUu |||||| -----augcgccggcCGUGAAg 2 8 1 17 [dm3:3L:13409205-13409221:+] 0.5822 120 6 -10.49 -0.2696 MIMAT0011791 dme-miR-2283 39505 flr uaaCAGCAUAAGUACUAUAAAAg | |||: | ||||||| ccgGCCGUG--AAGCAUAUUUUu 2 21 6 26 [dm3:3L:13409210-13409230:+] 0.5822 141 7 -8.41 -0.9967 MIMAT0012204 dme-miR-2495 39505 flr ucAGUCGGGUUAACUUCACGgu ||| ::| ||| |||||| cuUCAUUUC-AUUUAAGUGCaa 3 21 63 83 [dm3:3L:13409267-13409287:+] 0.5339 142 0 -12.83 -0.1055 MIMAT0012207 dme-miR-2496 39505 flr auacgcacacacucACGGGGcg |||||| auauucaacuacuuUGCCCCac 3 9 189 210 [dm3:3L:13409393-13409414:+] 0.5634 120 0 -11.55 -0.1781 MIMAT0000114 dme-miR-9a 39505 flr aguAUGUCGAUCUAUUG-GUUUCu ||| | ||: ||| ||||| aacUAC-GAAAGGAAACACAAAGa 2 21 262 284 [dm3:3L:13409466-13409488:+] 0.5634 122 0 -14.78 -1.2228 MIMAT0000332 dme-miR-274 39505 flr uaaugggcaaucacagccaGUGUUUu |||||| uacgaacuacgaaaggaaaCACAAAg 2 8 258 283 [dm3:3L:13409462-13409487:+] 0.5634 120 6 -14.31 -0.1111 MIMAT0000334 dme-miR-92a 39505 flr uauccggcccuGUUCACGUUac :|||||||| uucauuucauuUAAGUGCAAca 3 12 64 85 [dm3:3L:13409268-13409289:+] 0.5339 131 0 -9.75 -0.1766 MIMAT0000347 dme-miR-283 39505 flr ucUUAAUGGUCGA-CUAUAAAu |:|| || :| ||||||| acAGUUUACAUUUAGAUAUUUa 2 20 83 104 [dm3:3L:13409287-13409308:+] 0.5339 154 7 -9.83 -1.1688 MIMAT0000347 dme-miR-283 39505 flr ucuuaauggucgacUAUAAAu |||||| gccggccgugaagcAUAUUUu 2 8 5 25 [dm3:3L:13409209-13409229:+] 0.5822 120 6 -8.93 -0.1202 MIMAT0000358 dme-miR-92b 39505 flr cguccggcccugaUCACGUUaa ||||||| uucauuucauuuaAGUGCAAca 3 10 64 85 [dm3:3L:13409268-13409289:+] 0.5339 125 0 -7.98 -0.1766 MIMAT0000402 dme-miR-310 39505 flr uuuccggcccuucaCACGUUau |||||| uucauuucauuuaaGUGCAAca 3 9 64 85 [dm3:3L:13409268-13409289:+] 0.5339 120 0 -6.45 -0.1766 MIMAT0000403 dme-miR-311 39505 flr aguccggccACUUACACGUUau | || |||||| ucauuucauUUAA-GUGCAAca 3 14 65 85 [dm3:3L:13409269-13409289:+] 0.5339 123 0 -6.45 -0.1609 MIMAT0000404 dme-miR-312 39505 flr aguccggcaGAGUUCACGUUau :|:|||||||| uucauuucaUUUAAGUGCAAca 3 14 64 85 [dm3:3L:13409268-13409289:+] 0.5339 137 0 -13.92 -0.1717 MIMAT0000405 dme-miR-313 39505 flr agcccgacacuuUUCACGUUau |||||||| uucauuucauuuAAGUGCAAca 3 11 64 85 [dm3:3L:13409268-13409289:+] 0.5339 130 0 -8.65 -0.1717 MIMAT0005467 dme-miR-190 39505 flr guugguucuuauaguuuGUAUAGa |||||| aaguguuugcuaaucauCAUAUCa 2 8 162 185 [dm3:3L:13409366-13409389:+] 0.5634 120 6 -8.87 -0.1539 MIMAT0005472 dme-miR-375 39505 flr auugaAUUCGGUUUGCUUGUUu |: |:: ||||||| ucguaUGUGUUUUUCGAACAAu 2 18 219 240 [dm3:3L:13409423-13409444:+] 0.5634 141 7 -9.55 -1.2359 MIMAT0005484 dme-miR-968 39505 flr guUGGGAAAUUACCUA-----UGAUGAAu |:| | | |||||| ||||||| ucAUCAUAUCAUGGAUAUUCAACUACUUu 2 23 175 203 [dm3:3L:13409379-13409407:+] 0.5634 157 7 -14.99 -0.7959 MIMAT0005484 dme-miR-968 39505 flr guugggaaauuaccUAUGAUGAau |||||||| uucgaacaauuuuuAUACUACUgg 3 11 231 254 [dm3:3L:13409435-13409458:+] 0.5634 130 0 -13.05 -0.1280 MIMAT0005485 dme-miR-969 39505 flr uuUUGAACG-A--AUCACCUUGAg ||:|| : | || ||||||| acAAUUUUUAUACUACUGGAACUa 2 20 236 259 [dm3:3L:13409440-13409463:+] 0.5634 149 7 -10.41 -1.0967

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score flr RAID00190920 dme-miR-274-5p miRNA MIMAT0000332 flr mRNA 39505 Prediction 0.1828 flr RAID00328240 dme-miR-968-5p miRNA MIMAT0005484 flr mRNA 39505 Prediction 0.2202 flr RAID00481140 dme-miR-375-3p miRNA MIMAT0005472 flr mRNA 39505 Prediction 0.2202 flr RAID00556972 dme-miR-92b-3p miRNA MIMAT0000358 flr mRNA 39505 Prediction 0.1828 flr RAID00760777 dme-miR-975-5p miRNA MIMAT0005491 flr mRNA 39505 Prediction 0.1828 flr RAID00940096 dme-miR-190-5p miRNA MIMAT0005467 flr mRNA 39505 Prediction 0.2202 flr RAID01004114 dme-miR-283-5p miRNA MIMAT0000347 flr mRNA 39505 Prediction 0.1828 flr RAID01731676 dme-miR-985-3p miRNA MIMAT0005502 flr mRNA 39505 Prediction 0.1828 flr RAID02308050 dme-miR-313-3p miRNA MIMAT0000405 flr mRNA 39505 Prediction 0.1828 flr RAID02338730 dme-miR-9a-5p miRNA MIMAT0000114 flr mRNA 39505 Prediction 0.1828 flr RAID02713714 dme-miR-312-3p miRNA MIMAT0000404 flr mRNA 39505 Prediction 0.1828 flr RAID02859534 dme-let-7-5p miRNA MIMAT0000396 flr mRNA 39505 Prediction 0.1828 flr RAID03139112 dme-miR-311-3p miRNA MIMAT0000403 flr mRNA 39505 Prediction 0.1828 flr RAID03555443 dme-miR-92a-3p miRNA MIMAT0000334 flr mRNA 39505 Prediction 0.1828 flr RAID03559713 dme-miR-310-3p miRNA MIMAT0000402 flr mRNA 39505 Prediction 0.1828 flr RAID03973803 dme-miR-969-5p miRNA MIMAT0005485 flr mRNA 39505 Prediction 0.2202