DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000343 dme-miR-280 33212 ebi auaGUAAAG-UAUACGUUG-CAUUU-AUGu |||||: | || :||: |||| ||| uagCAUUUUAAAAUUUAAUACUAAAGUACu 2 25 829 858 [dm3:2L:418463-418492:+] 0.3557 130 0 -8.57 -0.7359 MIMAT0000343 dme-miR-280 33212 ebi auaguaaagUAUACGUUGCAUUUAUGu | || ||:| |||||| aacacaagaACAU-CAGCAAAAAUACa 2 19 749 774 [dm3:2L:418383-418408:+] 0.4957 124 6 -10.74 -0.1152 MIMAT0000364 dme-miR-289 33212 ebi ucAGCGUCCGAGGUGAAU--UUAUAAAu || | :| ||:||| |||||| auUCAAAAAUUGCAUUUAACUAUAUUUu 2 25 141 168 [dm3:2L:417775-417802:+] 0.5235 127 6 -8.91 -0.1201 MIMAT0005475 dme-miR-961 33212 ebi uagagUCAAUGACCACUAGUUu ||| | ||||||: aaagaAGUGAAAUAUGAUCAGu 2 18 171 192 [dm3:2L:417805-417826:+] 0.5549 129 0 -9.80 -0.1057 MIMAT0005475 dme-miR-961 33212 ebi uagagucAAUGACCACU-AGUUu ||||| ||| |||| gaaguuuUUACUUUUGAUUCAAa 2 16 125 147 [dm3:2L:417759-417781:+] 0.5205 123 0 -9.47 -1.2417 MIMAT0005499 dme-miR-983 33212 ebi agUAAUCA--AGCUUUGCA-UAAUa :| ||| ||| ||||| |||| uaGUCAGUAAUCG-AACGUAAUUAu 2 21 704 727 [dm3:2L:418338-418361:+] 0.5240 125 0 -13.26 -0.5156 MIMAT0005509 dme-miR-991 33212 ebi ugaaaGGUUUGAUGUUGAAAUu ::|||:|| ||||||| aguacUUAAAUUA-AACUUUAu 2 18 853 873 [dm3:2L:418487-418507:+] 0.2825 159 7 -9.64 -0.9650 MIMAT0005521 dme-miR-1001 33212 ebi acuaggaacccucAAAUGGGu ||||||| ccaccaaaaguccUUUACCCa 2 9 591 611 [dm3:2L:418225-418245:+] 0.5524 140 7 -13.61 -0.6054 MIMAT0005026 dme-miR-1013 33212 ebi gcUCAAGCCGUAUGAAAAUa |||| : |||||||: gaAGUU---UUUACUUUUGa 2 19 125 141 [dm3:2L:417759-417775:+] 0.5205 130 0 -8.41 -0.1334 MIMAT0011784 dme-miR-2279* 33212 ebi uuAAAGUGUGUGUCUAUAAAuu || ||: :| |||||| aaUUGCAUUUAACUAUAUUUuu 3 21 148 169 [dm3:2L:417782-417803:+] 0.5235 132 0 -4.92 -0.1085 MIMAT0011788 dme-miR-2281* 33212 ebi aacguagacgucgacgUCUAUUa |||||| agcaaaaauacauuaaAGAUAAa 2 8 763 785 [dm3:2L:418397-418419:+] 0.4957 120 6 -9.31 -0.2170 MIMAT0011791 dme-miR-2283 33212 ebi uaacAGCAUAAG-UACUAUAAAAg |:| |||: | ||||||| aaaaUUGCAUUUAACUAUAUUUUu 2 20 146 169 [dm3:2L:417780-417803:+] 0.5235 154 7 -6.69 -1.1287 MIMAT0012194 dme-miR-307-as* 33212 ebi gguaguguUGGAGGAACUC-ACu |||| |||||| || uaagguauACCU-CUUGAGAUGa 2 15 311 332 [dm3:2L:417945-417966:+] 0.5549 120 0 -17.44 -0.6516 MIMAT0012208 dme-miR-2497* 33212 ebi uuGUUGAUGUAAAACGUU-ACGAAug |||: ::| ||||:|| ||||| ugCAAUCGUA-UUUGUAAUUGCUUua 3 24 269 293 [dm3:2L:417903-417927:+] 0.5549 121 0 -14.54 -0.1234 MIMAT0012215 dme-miR-2500 33212 ebi gacuccAGGUGUGUGUUUU-AGg ||| ||| ||||| || ccgcccUCCCCAC-CAAAAGUCc 2 17 582 603 [dm3:2L:418216-418237:+] 0.5524 122 0 -15.70 -0.3844 MIMAT0000109 dme-miR-4 33212 ebi aguuaccAACA-GAUCGAAAUa |||| | |||||| aucguauUUGUAAUUGCUUUAa 2 15 273 294 [dm3:2L:417907-417928:+] 0.5549 121 6 -9.32 -0.1504 MIMAT0000110 dme-miR-5 33212 ebi guaUAGUGUUGCUAGCAAG-GAAa | ||:::: :|:|||| ||| uucAACAUGGUUGUUGUUCUCUUc 2 21 418 441 [dm3:2L:418052-418075:+] 0.5487 124 0 -13.68 -0.2465 MIMAT0000319 dme-miR-263a 33212 ebi cacuuaagaaggucacgGUAAUUg |||||| gaacaucagcaaaaauaCAUUAAa 2 8 756 779 [dm3:2L:418390-418413:+] 0.4957 120 6 -6.89 -0.1361 MIMAT0000332 dme-miR-274 33212 ebi uaAUGGGCAAUCACAGC-CAGUGUUUu ||| | ||||| ||| |||||||| cgUACGC-UUAGUUUCGAGUCACAAAa 2 25 362 387 [dm3:2L:417996-418021:+] 0.5518 181 7 -25.83 -0.6700 MIMAT0000338 dme-miR-277 33212 ebi acAGCAUGGUCUAUCACGUAAAu |:| :|| | | ||||||| uuUUGAUUCAAAAAUUGCAUUUa 2 22 136 158 [dm3:2L:417770-417792:+] 0.5205 157 7 -9.75 -1.2909 MIMAT0000338 dme-miR-277 33212 ebi acAGCAUGGUC-UAU---CACGUAAAu |||| ::|| ||| ||||||| aaUCGU-UUAGUAUAACUUUGCAUUUu 2 22 522 547 [dm3:2L:418156-418181:+] 0.5524 149 7 -13.31 -0.9806 MIMAT0000338 dme-miR-277 33212 ebi acagcauggucuaucaCGUAAAu |||||| uguuuuuuguauuuuaGCAUUUu 2 8 815 837 [dm3:2L:418449-418471:+] 0.4289 120 6 -8.17 -0.1190 MIMAT0000342 dme-miR-33 33212 ebi guuacgcugauguUACGUGGa ||||||| acaaaauaucgauAUGCACCu 2 9 382 402 [dm3:2L:418016-418036:+] 0.5487 140 7 -15.99 -0.6976 MIMAT0000347 dme-miR-283 33212 ebi ucuuaauggucgacUAUAAAu |||||| aauugcauuuaacuAUAUUUu 2 8 148 168 [dm3:2L:417782-417802:+] 0.5235 120 6 -5.07 -0.1225 MIMAT0000409 dme-miR-317 33212 ebi ugaCCUAUGGUG-GUCGAC-ACAAGu || | | || ::|:|| ||||| gggGGCUUCAACAUGGUUGUUGUUCu 2 22 412 437 [dm3:2L:418046-418071:+] 0.5487 124 0 -17.46 -0.3512 MIMAT0000412 dme-miR-iab-4-5p 33212 ebi aguccuauguaagucAUAUGCa |||||| aaggucgucccuuuuUAUACGa 2 8 499 520 [dm3:2L:418133-418154:+] 0.5616 120 6 -10.13 -0.1384 MIMAT0000413 dme-miR-iab-4-3p 33212 ebi caAUGCAUAUGACUUCCAUAUGGc || || | :| |||||||||| auUA-GU-UCUUUAAGGUAUACCu 2 23 301 322 [dm3:2L:417935-417956:+] 0.5549 162 7 -15.08 -0.5805 MIMAT0005476 dme-miR-962 33212 ebi cuGUCGUAGUUAAAGAGAUG-GAAUa || |:|| ||||| ||| |||| ucCA-CGUCUAUUUC-GUACGCUUAg 2 24 349 372 [dm3:2L:417983-418006:+] 0.5518 131 0 -14.67 -0.6804 MIMAT0005478 dme-miR-964 33212 ebi uucaauucgaggggaUAAGAUu |||||| uuguaauugcuuuaaAUUCUAa 2 8 280 301 [dm3:2L:417914-417935:+] 0.5549 120 6 -9.87 -0.2686 MIMAT0005480 dme-miR-965 33212 ebi uuccccuuuucgaUAUGCGAAu :||||||| ccacgucuauuucGUACGCUUa 2 10 350 371 [dm3:2L:417984-418005:+] 0.5518 141 7 -11.59 -0.6566 MIMAT0005483 dme-miR-1002 33212 ebi agcgggaaacauaggugAUGAAUu |||||| aaaauuuaauacuaaagUACUUAa 2 8 838 861 [dm3:2L:418472-418495:+] 0.3557 120 6 -7.31 -0.2458 MIMAT0005501 dme-miR-927 33212 ebi ccauuucgcauccUUAAGAUUu |||||||| uguaauugcuuuaAAUUCUAAu 2 10 281 302 [dm3:2L:417915-417936:+] 0.5549 145 7 -8.24 -1.1392 MIMAT0005504 dme-miR-987 33212 ebi guagUUAGGUC-UGAUAAAUGAAAu :| | || | | |||||||| uacgGAACGAGAAGUUUUUACUUUu 2 21 115 139 [dm3:2L:417749-417773:+] 0.5205 155 7 -11.80 -0.8623 MIMAT0005504 dme-miR-987 33212 ebi guagUUAGGUCUGAUAAA-UGAAAu |||| : | | ||| ||||| augaAAUCGGUAGUUUUUCACUUUc 2 21 89 113 [dm3:2L:417723-417747:+] 0.5176 128 0 -6.98 -0.9332 MIMAT0005516 dme-miR-252 33212 ebi gaggacgccGUGA--UCAUGAAUc :||| |||||||| aaaauuuaaUACUAAAGUACUUAa 2 14 838 861 [dm3:2L:418472-418495:+] 0.3557 148 7 -10.75 -1.2485 MIMAT0005519 dme-miR-999 33212 ebi ucUGUGUCAG-AAUGUCA-AUUGu |:||| || ||||| |||| gcAUACAUUCAGAACAGUGUAACu 2 21 669 692 [dm3:2L:418303-418326:+] 0.5524 127 0 -12.12 -0.2219

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ebi RAID00168391 dme-miR-964-5p miRNA MIMAT0005478 ebi mRNA 33212 Prediction 0.2202 ebi RAID00317366 dme-miR-987-5p miRNA MIMAT0005504 ebi mRNA 33212 Prediction 0.2202 ebi RAID00343381 dme-miR-1001-5p miRNA MIMAT0005521 ebi mRNA 33212 Prediction 0.1828 ebi RAID00369635 dme-miR-283-5p miRNA MIMAT0000347 ebi mRNA 33212 Prediction 0.1828 ebi RAID00982799 dme-miR-277-3p miRNA MIMAT0000338 ebi mRNA 33212 Prediction 0.2455 ebi RAID01000527 dme-miR-252-5p miRNA MIMAT0005516 ebi mRNA 33212 Prediction 0.2202 ebi RAID01010616 dme-miR-962-5p miRNA MIMAT0005476 ebi mRNA 33212 Prediction 0.1828 ebi RAID01210028 dme-miR-999-3p miRNA MIMAT0005519 ebi mRNA 33212 Prediction 0.1828 ebi RAID01355562 dme-miR-5-5p miRNA MIMAT0000110 ebi mRNA 33212 Prediction 0.1828 ebi RAID01445489 dme-miR-961-5p miRNA MIMAT0005475 ebi mRNA 33212 Prediction 0.1828 ebi RAID01459315 dme-miR-965-3p miRNA MIMAT0005480 ebi mRNA 33212 Prediction 0.2202 ebi RAID02108377 dme-miR-iab-4-3p miRNA MIMAT0000413 ebi mRNA 33212 Prediction 0.1828 ebi RAID02592108 dme-miR-iab-4-5p miRNA MIMAT0000412 ebi mRNA 33212 Prediction 0.1828 ebi RAID03012731 dme-mir-iab-4 miRNA MI0000432 ebi mRNA 33212 Prediction 0.1828 ebi RAID03371785 dme-miR-991-3p miRNA MIMAT0005509 ebi mRNA 33212 Prediction 0.1828 ebi RAID03399350 dme-miR-927-5p miRNA MIMAT0005501 ebi mRNA 33212 Prediction 0.2202 ebi RAID03440908 dme-miR-1002-5p miRNA MIMAT0005483 ebi mRNA 33212 Prediction 0.2202 ebi RAID03525991 dme-miR-33-5p miRNA MIMAT0000342 ebi mRNA 33212 Prediction 0.1828 ebi RAID03658000 dme-miR-4-3p miRNA MIMAT0000109 ebi mRNA 33212 Prediction 0.2202 ebi RAID03662053 dme-miR-274-5p miRNA MIMAT0000332 ebi mRNA 33212 Prediction 0.2202 ebi RAID04023142 dme-miR-263a-5p miRNA MIMAT0000319 ebi mRNA 33212 Prediction 0.1828 ebi RAID04057623 dme-miR-317-3p miRNA MIMAT0000409 ebi mRNA 33212 Prediction 0.1828