DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000360 dme-miR-287 31903 CG3004 cacGUUUGCUAAA---AGUUGUgu :||:| | || |||||| ucuUAAGCCAGUUAAAUCAACAaa 3 19 361 384 [dm3:X:9498527-9498550:-] 0.4720 129 0 -6.61 -0.1120 MIMAT0005465 dme-miR-954 31903 CG3004 ugUGUGUUGCGUUG-UGGGUCu :|| ||| |: | |||||| ccGCAAAAC-CGCCAACCCAGc 2 20 405 425 [dm3:X:9498486-9498506:-] 0.4720 121 6 -19.72 -0.1592 MIMAT0005473 dme-miR-959 31903 CG3004 aaGUAUUAUGGGGGCUAC-UGUu || ||||:|:| |||| ||| aaCA-AAUAUCUCAGAUGUACAa 2 21 379 400 [dm3:X:9498511-9498532:-] 0.4720 134 0 -18.11 -0.5573 MIMAT0012196 dme-miR-2489 31903 CG3004 ugaCGUUUAUGUUGUAUGUUAu |:| |||| ||||||||| agcGUACAUAC-ACAUACAAUa 2 20 701 721 [dm3:X:9498190-9498210:-] 0.4676 169 7 -18.55 -0.5147 MIMAT0012211 dme-miR-2498 31903 CG3004 uucauucugcccuUACGGUCAAa | ||||||| uacgaucuaucuuAAGCCAGUUa 2 11 352 374 [dm3:X:9498537-9498559:-] 0.4720 142 7 -10.35 -1.2309 MIMAT0012213 dme-miR-2499 31903 CG3004 auGCCUGCACUUACAGUAGGCGUa | ||:|| | ||||||||| cuCAGAUGU-ACAAUCAUCCGCAa 2 23 388 410 [dm3:X:9498501-9498523:-] 0.4720 160 7 -20.75 -0.5794 MIMAT0012214 dme-miR-2500* 31903 CG3004 ccauaacauauacacacaAGGAAUg |||||| gucucaaaaaaauugauaUCCUUAa 2 8 278 302 [dm3:X:9498609-9498633:-] 0.4720 120 6 -7.30 -0.1202 MIMAT0000334 dme-miR-92a 31903 CG3004 uauccgGCCCUGUUCA-CGUUAc :|||: :||| ||||| aaacagUGGGGAGAGUAGCAAUg 2 17 465 487 [dm3:X:9498424-9498446:-] 0.5007 124 0 -21.23 -0.5069 MIMAT0000335 dme-miR-219 31903 CG3004 guucuuaacgcaaacCUGUUAGu ||||||| ccgccaacccagcgaGACAAUCc 2 9 413 435 [dm3:X:9498476-9498498:-] 0.4720 140 7 -11.79 -0.1442 MIMAT0000358 dme-miR-92b 31903 CG3004 cguccgGCCCUGAUCA-CGUUAa :|||: ||| ||||| aaacagUGGGGAGAGUAGCAAUg 2 17 465 487 [dm3:X:9498424-9498446:-] 0.5007 120 0 -20.95 -0.5069 MIMAT0000402 dme-miR-310 31903 CG3004 uuuccgGCCCUUCACA-CGUUAu :|||:|| || ||||| aaacagUGGGGAGAGUAGCAAUg 2 17 465 487 [dm3:X:9498424-9498446:-] 0.5007 128 0 -20.39 -0.5069 MIMAT0000403 dme-miR-311 31903 CG3004 aguccgGCCACUUACA-CGUUAu :|| ||: || ||||| aaacagUGGGGAGAGUAGCAAUg 2 17 465 487 [dm3:X:9498424-9498446:-] 0.5007 120 0 -17.21 -0.5139 MIMAT0000405 dme-miR-313 31903 CG3004 agcccgACACUUUUCA-CGUUAu || |:|:||| ||||| aaacagUGGGGAGAGUAGCAAUg 2 17 465 487 [dm3:X:9498424-9498446:-] 0.5007 128 0 -16.14 -0.5104 MIMAT0000407 dme-miR-315 31903 CG3004 cgaAAGACUC-GUUG--UUAGUUuu | :| || ||:: |||||| cuaUCUUAAGCCAGUUAAAUCAAca 3 20 358 382 [dm3:X:9498529-9498553:-] 0.4720 125 0 -8.64 -0.1362 MIMAT0005476 dme-miR-962 31903 CG3004 cuGUCGUAGUUAAAGAGAUG-GAAUa |:|: |:|:|| ||||| |||| cgCGGUUUUAGUU--UCUACUCUUAa 2 24 185 208 [dm3:X:9498703-9498726:-] 0.4446 132 0 -17.13 -1.0243 MIMAT0005493 dme-miR-977 31903 CG3004 aaucuGUUGCACUUAUAGAGu |||| |||||||| uaaauCAAC--AAAUAUCUCa 2 17 373 391 [dm3:X:9498520-9498538:-] 0.4720 149 7 -13.94 -1.0998 MIMAT0005507 dme-miR-137 31903 CG3004 gaugcACAUAAGAGUU-CGUUAu ||||| | || ||||| ucguuUGUAUGCAAAAUGCAAUu 2 18 661 683 [dm3:X:9498228-9498250:-] 0.5511 125 0 -10.49 -0.9029 MIMAT0005513 dme-miR-994 31903 CG3004 uagugccgaugauaaAGGAAUc |||||| ucaaaaaaauugauaUCCUUAa 2 8 281 302 [dm3:X:9498609-9498630:-] 0.4720 120 6 -7.42 -0.1238 MIMAT0005027 dme-miR-1014 31903 CG3004 gacguuUAC-UUUUAC-UUAAAa ||| |||||| ||||| guuuguAUGCAAAAUGCAAUUUg 2 16 663 685 [dm3:X:9498226-9498248:-] 0.5511 130 0 -8.14 -1.1224

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Lst8 RAID00302694 dme-miR-962-5p miRNA MIMAT0005476 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID00351217 dme-miR-137-3p miRNA MIMAT0005507 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID00624763 dme-miR-313-3p miRNA MIMAT0000405 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID00813436 dme-miR-34-5p miRNA MIMAT0000350 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID01154754 dme-miR-133-3p miRNA MIMAT0000340 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID01242394 dme-miR-219-5p miRNA MIMAT0000335 Lst8 mRNA 31903 Prediction 0.2202 Lst8 RAID01257852 dme-miR-33-5p miRNA MIMAT0000342 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID01903996 dme-miR-375-3p miRNA MIMAT0005472 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID01976154 dme-miR-994-5p miRNA MIMAT0005513 Lst8 mRNA 31903 Prediction 0.2202 Lst8 RAID02225550 dme-miR-1014-3p miRNA MIMAT0005027 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID02309973 dme-miR-311-3p miRNA MIMAT0000403 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID02663213 dme-miR-92a-3p miRNA MIMAT0000334 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID03158251 dme-miR-310-3p miRNA MIMAT0000402 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID03176150 dme-miR-977-3p miRNA MIMAT0005493 Lst8 mRNA 31903 Prediction 0.2202 Lst8 RAID03391404 dme-miR-315-5p miRNA MIMAT0000407 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID03637471 dme-miR-92b-3p miRNA MIMAT0000358 Lst8 mRNA 31903 Prediction 0.1828 Lst8 RAID03936376 dme-miR-967-5p miRNA MIMAT0005482 Lst8 mRNA 31903 Prediction 0.1828