DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000117 dme-miR-12 44054 crl ugguCAUGGACUACAUUAUGAgu ||| || || |||||| cuauGUA-CUCAUAAAAUACUac 3 20 534 555 [dm3:X:16489376-16489397:+] 0.5923 137 0 -9.48 -0.1034 MIMAT0000343 dme-miR-280 44054 crl auagUAA-AGUAUACGU-UGCA-UUUAUGu ||| || ||||:| | | |||||| ugaaAUUGUCCUAUGUACUCAUAAAAUACu 2 24 524 553 [dm3:X:16489366-16489395:+] 0.5615 133 6 -7.71 -0.9574 MIMAT0000343 dme-miR-280 44054 crl auaguaaaguAUACGUUGC-AUUUAUgu | || || | |||||| aagaugcuguUUUGAAAAGUUAAAUAga 3 18 365 392 [dm3:X:16489207-16489234:+] 0.5256 132 0 -9.22 -0.1843 MIMAT0000363 dme-miR-288 44054 crl guACUUUACUUUA-GCUGUACUUu | || |||||| | ||||||| caUUAACUGAAAUCCAACAUGAAa 2 22 505 528 [dm3:X:16489347-16489370:+] 0.5615 172 7 -17.27 -1.1491 MIMAT0000364 dme-miR-289 44054 crl ucagcguccGAGGUGAAUUUAUAAAu :|:: :||| |||||| aagguuuauUUUUUUUUAUAUAUUUu 2 18 308 333 [dm3:X:16489150-16489175:+] 0.5256 129 6 -9.73 -0.1330 MIMAT0000388 dme-miR-303 44054 crl uggucaaaggACACUUUGGAUUu || :||||||| uuagcaaaaaUGAAGAACCUAAc 2 14 118 140 [dm3:X:16488960-16488982:+] 0.5289 145 7 -9.78 -0.6220 MIMAT0005517 dme-miR-997 44054 crl acuuugAGGAAGCUCAAACCc | |||: |||||| gcauuaUGCUUUAUGUUUGGu 2 16 451 471 [dm3:X:16489293-16489313:+] 0.5306 123 6 -10.50 -0.1659 MIMAT0011784 dme-miR-2279* 44054 crl uuaAAGUGUGUGUCUAUAAAuu ||: : : :| |||||| uuaUUUUUUUUUAUAUAUUUuc 3 20 313 334 [dm3:X:16489155-16489176:+] 0.5256 127 0 -4.55 -0.1673 MIMAT0011787 dme-miR-2280* 44054 crl agucAAUCGAACCUUCAUUUAa || | || |||||||| uucaUUCGAUU--AAGUAAAUu 2 19 571 590 [dm3:X:16489413-16489432:+] 0.5923 151 7 -6.46 -1.1442 MIMAT0011790 dme-miR-2282 44054 crl uaagaUAAAAAUCG-AGUGGCua || | || |||||| -auggAUCAUGUGCGUCACCGuc 3 18 1 22 [dm3:X:16488843-16488864:+] 0.6008 124 0 -12.09 -0.1211 MIMAT0011791 dme-miR-2283 44054 crl uaacAGCAUAAGUACUAUAAAAg |: | ||:|| ||||||| uuauUUUUUUUUAU-AUAUUUUc 2 20 313 334 [dm3:X:16489155-16489176:+] 0.5256 157 7 -7.28 -1.1562 MIMAT0011791 dme-miR-2283 44054 crl uaacagcauaaguacuAUAAAAg |||||| ucuauuauuaaagguuUAUUUUu 2 8 298 320 [dm3:X:16489140-16489162:+] 0.5256 120 6 -2.11 -0.2297 MIMAT0012208 dme-miR-2497* 44054 crl uuGUUGAUGUAAAACGU---UACGAAug :|: ||:| ||||:| |||||| acUAGAUAUAAUUUGUAUUGAUGCUUua 3 24 335 362 [dm3:X:16489177-16489204:+] 0.5256 146 0 -11.68 -0.2012 MIMAT0012215 dme-miR-2500 44054 crl gacUCCAGGUGUGU-GUUUUAGg || || ||: ||||||| ugaAGAACCUAACGUCAAAAUCg 2 20 128 150 [dm3:X:16488970-16488992:+] 0.5289 150 7 -12.01 -0.7320 MIMAT0000106 dme-miR-2a 44054 crl cgAGUAGUUUCGACCGACACUAu | ||:|| |:| || |||| auUGAUUAAUGUUCACUUUGAUa 2 22 588 610 [dm3:X:16489430-16489452:+] 0.5923 133 0 -10.88 -0.1405 MIMAT0000107 dme-miR-2b 44054 crl cgaggAGUUUCGACCGACACUAu |:|| |:| || |||| auugaUUAAUGUUCACUUUGAUa 2 19 588 610 [dm3:X:16489430-16489452:+] 0.5923 126 0 -8.43 -0.1405 MIMAT0000109 dme-miR-4 44054 crl aguuaccaacagauCGAAAUa |||||| uaauuuguauugauGCUUUAu 2 8 343 363 [dm3:X:16489185-16489205:+] 0.5256 120 6 -7.82 -0.1346 MIMAT0000111 dme-miR-6 44054 crl uuuuucUUGUCGGUGACACUAu ||:: :|||| |||| uugauuAAUGUUCACUUUGAUa 2 17 589 610 [dm3:X:16489431-16489452:+] 0.5923 128 0 -11.68 -0.1433 MIMAT0000346 dme-miR-282 44054 crl ugucuguuucggaucaucuccGAUCUAa |||||| auuuuuuuuuauauauuuucaCUAGAUa 2 8 315 342 [dm3:X:16489157-16489184:+] 0.5256 120 6 -8.89 -0.2526 MIMAT0000347 dme-miR-283 44054 crl ucuuaauggucgacUAUAAAu |||||| uuauuuuuuuuuauAUAUUUu 2 8 313 333 [dm3:X:16489155-16489175:+] 0.5256 120 6 -1.78 -0.1304 MIMAT0000411 dme-miR-2c 44054 crl cgggUAGUUUCGACCGACACUAu ||:|| |:| || |||| auugAUUAAUGUUCACUUUGAUa 2 20 588 610 [dm3:X:16489430-16489452:+] 0.5923 131 0 -10.12 -0.1405 MIMAT0005472 dme-miR-375 44054 crl auugAAUUCGGUUUGCU-UGUUu ||:|||:|| ||| |||| cucgUUGAGCUAACCGACACAAg 2 19 88 110 [dm3:X:16488930-16488952:+] 0.5289 138 0 -17.54 -0.7183 MIMAT0005474 dme-miR-960 44054 crl cgAUACGUUAG-ACCUUAUGAgu ||||:| || | |||||| ccUAUGUACUCAUAAAAUACUac 3 21 533 555 [dm3:X:16489375-16489397:+] 0.5923 143 0 -13.50 -0.1024 MIMAT0005478 dme-miR-964 44054 crl uucaauucgaggggaUAAGAUu |||||| gcaagaaaagugaaaAUUCUAa 2 8 271 292 [dm3:X:16489113-16489134:+] 0.5256 120 6 -8.51 -0.2306 MIMAT0005501 dme-miR-927 44054 crl ccaUUUCGCAUCCUUAAGAUUu ||||:| | |||||||| agaAAAGUGAA--AAUUCUAAu 2 20 274 293 [dm3:X:16489116-16489135:+] 0.5256 160 7 -11.63 -1.1350 MIMAT0005503 dme-miR-986 44054 crl agUCAGUG-UUGCGA---UAAGCUcu | |::: ||||:| |||||| acAAUUGUAAACGUUUUCAUUCGAuu 3 21 556 581 [dm3:X:16489398-16489423:+] 0.5923 130 0 -12.12 -0.1221 MIMAT0005506 dme-miR-989 44054 crl caaGGUGAUGCA----GUGUAGUGu |:|:||| | :||||||| ggcCUAUUACCUGAAGUACAUCACu 2 19 203 227 [dm3:X:16489045-16489069:+] 0.5403 149 7 -16.96 -0.3882 MIMAT0005030 dme-miR-1017 44054 crl ccUACUCAAACCCAUCU-CGAAAg || | |||| | || ||||| auAU-AAUUUGUAUUGAUGCUUUa 2 22 340 362 [dm3:X:16489182-16489204:+] 0.5256 123 0 -7.08 -1.2287

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Ubc7 RAID00049276 dme-miR-282-5p miRNA MIMAT0000346 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID00241080 dme-miR-375-3p miRNA MIMAT0005472 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID00247307 dme-miR-306-5p miRNA MIMAT0000393 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID00336200 dme-miR-960-5p miRNA MIMAT0005474 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID00374759 dme-miR-1017-3p miRNA MIMAT0005030 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID00394793 dme-miR-974-5p miRNA MIMAT0005490 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID01003911 dme-miR-964-5p miRNA MIMAT0005478 Ubc7 mRNA 44054 Prediction 0.2202 Ubc7 RAID01619524 dme-miR-986-5p miRNA MIMAT0005503 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID01821668 dme-miR-190-5p miRNA MIMAT0005467 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID02271426 dme-miR-2b-3p miRNA MIMAT0000107 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID02321686 dme-miR-275-3p miRNA MIMAT0000333 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID02355221 dme-miR-976-3p miRNA MIMAT0005492 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID02717655 dme-miR-989-3p miRNA MIMAT0005506 Ubc7 mRNA 44054 Prediction 0.2202 Ubc7 RAID02924393 dme-miR-1016-3p miRNA MIMAT0005029 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID03136066 dme-miR-2a-3p miRNA MIMAT0000106 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID03197717 dme-miR-4-3p miRNA MIMAT0000109 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID03288577 dme-miR-283-5p miRNA MIMAT0000347 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID03441341 dme-miR-2c-3p miRNA MIMAT0000411 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID03613172 dme-miR-927-5p miRNA MIMAT0005501 Ubc7 mRNA 44054 Prediction 0.2202 Ubc7 RAID03856897 dme-miR-6-3p miRNA MIMAT0000111 Ubc7 mRNA 44054 Prediction 0.1828 Ubc7 RAID03941371 dme-miR-1010-3p miRNA MIMAT0005023 Ubc7 mRNA 44054 Prediction 0.1828