DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 179472 cat-4 cauuccaucUUUUAACGUAUCAAGu | || |||||||| gcaaacccaACAACAACAUAGUUCu 2 17 877 901 [ce6:V:10567422-10567422,10567468-10567491:+] 0.6433 148 7 -10.80 -0.8701 MIMAT0015102 cel-miR-60* 179472 cat-4 uaaaauaccgugagAAGGUCAa ||||||| ccacaacucgcgaaUUCCAGUc 2 9 780 801 [ce6:V:10567325-10567346:+] 0.6214 140 7 -13.88 -0.7025 MIMAT0015102 cel-miR-60* 179472 cat-4 uaaAAUACCGUGAGAAGGU-CAa ||| |||| :||||| || aaaUUACGGCAACUUUCCAUGUu 2 20 435 457 [ce6:V:10566664-10566686:+] 0.6463 131 0 -16.82 -1.0487 MIMAT0015114 cel-miR-238* 179472 cat-4 cgaaacuugcaggcucuUGUAGGu |||||| auggaaucacuccuuucACAUCCc 2 8 540 563 [ce6:V:10566954-10566977:+] 0.7296 120 6 -12.35 -0.1094 MIMAT0015115 cel-miR-239b* 179472 cat-4 aaaAACGUGUGGUGUUUUCAcg || :||| | |||||| auaUUUUACA-AAGAAAAGUcc 3 20 378 398 [ce6:V:10566607-10566627:+] 0.5628 133 0 -9.03 -0.1218 MIMAT0015116 cel-miR-240* 179472 cat-4 guAAGAUCAGAGUUUUAG-GAGc ||||:| :::|||| ||| aaUUCUGGCGAUGGAAUCACUCc 2 21 530 552 [ce6:V:10566944-10566966:+] 0.7296 124 0 -14.17 -1.0066 MIMAT0000311 cel-miR-256 179472 cat-4 augucagaagauacGUAAGGu |||||| ccuuucacaucccaCAUUCCa 2 8 551 571 [ce6:V:10566965-10566985:+] 0.7357 120 6 -11.88 -0.1017 MIMAT0000702 cel-miR-360 179472 cat-4 aacacuugcccuAAUGCCAgu ||||||| aaagaacacuuuUUACGGUaa 3 10 725 745 [ce6:V:10567189-10567209:+] 0.6161 125 0 -13.48 -0.1510 MIMAT0015240 cel-miR-788* 179472 cat-4 gcUAAGAUUAGGUAAAGg ||||||: :|||||| aaAUUCUAG-UCAUUUCc 2 17 1 17 [ce6:V:10566230-10566246:+] 0.4793 146 6 -17.73 -0.2031 MIMAT0004228 cel-miR-793 179472 cat-4 agaCAGAUUGA---UUC--UAUGGAgu || |||| :|| |||||| acgGUAAAACUUUAGAGCAAUACCUaa 3 20 739 765 [ce6:V:10567203-10567229:+] 0.6961 125 0 -11.17 -0.1982 MIMAT0015241 cel-miR-797* 179472 cat-4 uaAAGUGUCUUUGGUUACUUUu || || |::| ||||||| aaUUAACUGGGA--AAUGAAAg 2 21 202 221 [ce6:V:10566431-10566450:+] 0.4793 153 7 -9.50 -0.4718 MIMAT0005032 cel-miR-1019 179472 cat-4 gaccuuucGUUACACCUUAAUGUc :|||| | |||||| uuguuguaUAAUGAGCUAUUACAc 2 17 579 602 [ce6:V:10566993-10567016:+] 0.7357 128 6 -8.65 -0.1371 MIMAT0005032 cel-miR-1019 179472 cat-4 gaccuUUCGUUACACCUUAAUGuc | ||||| |||||| uguacAUGCAAU---AAAUUACua 3 20 155 175 [ce6:V:10566384-10566404:+] 0.4793 127 0 -6.08 -0.1393 MIMAT0005523 cel-miR-1022 179472 cat-4 cuaccgcAGGAUUGUUACUAGAa | :|| ::||||||| ggaucauUGUUAUUGAUGAUCUg 2 17 855 877 [ce6:V:10567400-10567422:+] 0.6214 152 7 -11.31 -0.3024 MIMAT0006586 cel-miR-1819 179472 cat-4 agguaguucgaguuaGUAAGGu |||||| uccuuucacaucccaCAUUCCa 2 8 550 571 [ce6:V:10566964-10566985:+] 0.7357 120 6 -14.76 -0.1027 MIMAT0006590 cel-miR-1823 179472 cat-4 aaUGAGGAUUUGUGAAGGUCAu || || : | ||||||| ccACAACUCGCGAAUUCCAGUc 2 21 780 801 [ce6:V:10567325-10567346:+] 0.6214 148 7 -13.54 -0.7100 MIMAT0006590 cel-miR-1823 179472 cat-4 aaUGAGGAUUUGUG-AAGGU-CAu |||::| | || ||||| || uaACUUUUCAUAACUUUCCAUGUg 2 21 52 75 [ce6:V:10566281-10566304:+] 0.4793 123 0 -14.95 -0.8428 MIMAT0006768 cel-miR-1828 179472 cat-4 ugAUAGUGAA-UUUA---CGAAG-GUCa |: ||:|| |:|| ||||| ||| gaUGGCAUUUCAGAUAUGGCUUCACAGu 2 22 812 839 [ce6:V:10567357-10567384:+] 0.6214 123 0 -15.99 -0.4678 MIMAT0011427 cel-miR-2208a 179472 cat-4 ccuauagucuaagcccAUGUGAa |||||| uuguauaaugagcuauUACACUu 2 8 582 604 [ce6:V:10566996-10567018:+] 0.7357 120 6 -8.70 -0.2059 MIMAT0011429 cel-miR-2208b-5p 179472 cat-4 ccuauagucuaggcccAUGUGAa |||||| uuguauaaugagcuauUACACUu 2 8 582 604 [ce6:V:10566996-10567018:+] 0.7357 120 6 -8.94 -0.2059 MIMAT0011430 cel-miR-2208b-3p 179472 cat-4 acuUCAC-AUGGUU-UUAGACGUa | || ||:::| :||||||| aucAUUGUUAUUGAUGAUCUGCAa 2 20 857 880 [ce6:V:10567402-10567422,10567468-10567470:+] 0.6433 153 7 -10.71 -0.7209 MIMAT0011431 cel-miR-2209a* 179472 cat-4 cuuCCUCUU-CUCACCAAUGUGAg | | || ||| ||||||| guuGUAUAAUGAGCUAUUACACUu 2 21 581 604 [ce6:V:10566995-10567018:+] 0.7357 151 7 -10.62 -1.2271 MIMAT0011433 cel-miR-2209c* 179472 cat-4 uuUGUUCUGCACGCCAAUGUGAg ::| |:| || ||||||| uuGUAUAAUGAGCUAUUACACUu 2 22 582 604 [ce6:V:10566996-10567018:+] 0.7357 153 7 -12.07 -1.2298 MIMAT0011453 cel-miR-2209b* 179472 cat-4 cuuCCUCUU-CUCAACAAUGUGa | | || ||| | |||||| guuGUAUAAUGAGCUAUUACACu 2 20 581 603 [ce6:V:10566995-10567017:+] 0.7357 130 6 -9.88 -0.1713 MIMAT0011458 cel-miR-2218b* 179472 cat-4 agAGUGAUGU-UUGAUGUUUAAa ||| |:| ::| ||||||| uuUCAGCAUAUGGCGACAAAUUu 2 21 502 524 [ce6:V:10566916-10566938:+] 0.7382 155 7 -11.36 -0.6153 MIMAT0011462 cel-miR-2220 179472 cat-4 gacauUCAGGUGUUUGUUAAcu | |||| |:|||||| cccacAUUCCA-AGACAAUUug 3 18 561 581 [ce6:V:10566975-10566995:+] 0.7357 139 0 -10.94 -0.1151 MIMAT0014447 cel-miR-2953-3p 179472 cat-4 cgaUGUCUUCUCGA--UCACUAGu :|| | | || ||||||| gcgGCAUACUAACUCGAGUGAUCg 2 20 683 706 [ce6:V:10567147-10567170:+] 0.6161 146 7 -14.59 -0.2101 MIMAT0000003 cel-miR-1 179472 cat-4 auguaUGAAGAAAUGUAAGGu || || ||||||| cuuucACAUC-CCACAUUCCa 2 17 552 571 [ce6:V:10566966-10566985:+] 0.7357 142 7 -11.60 -0.9752 MIMAT0000015 cel-miR-44 179472 cat-4 ucgacuuacacaGAGAUCAGu :||||||| ---------aaaUUCUAGUCa 2 10 1 12 [ce6:V:10566230-10566241:+] 0.4793 141 7 -13.03 -0.9946 MIMAT0000016 cel-miR-45 179472 cat-4 ucgacuuacacaGAGAUCAGu :||||||| ---------aaaUUCUAGUCa 2 10 1 12 [ce6:V:10566230-10566241:+] 0.4793 141 7 -13.03 -0.9946 MIMAT0000032 cel-miR-60 179472 cat-4 acuugaucuuuuacacGUAUUAu |||||| aaaaguccuauucaaaCAUAAUg 2 8 391 413 [ce6:V:10566620-10566642:+] 0.6463 120 6 -6.02 -0.1050 MIMAT0000033 cel-miR-61 179472 cat-4 cuacucauugccAAGAUCAGu |||||||| ---------aaaUUCUAGUCa 2 10 1 12 [ce6:V:10566230-10566241:+] 0.4793 145 7 -12.46 -1.0005 MIMAT0000289 cel-miR-234 179472 cat-4 uucccaUAAGAGCUCGUUAUu | |:| |||||||| gguaaaACUUUAGAGCAAUAc 2 16 741 761 [ce6:V:10567205-10567225:+] 0.6961 155 7 -12.88 -0.9390 MIMAT0000289 cel-miR-234 179472 cat-4 uucccAUAAGA-GCUCGUUAUu |||| | | |||||| gcuuuUAUUGUACAUGCAAUAa 2 17 147 168 [ce6:V:10566376-10566397:+] 0.4793 123 6 -7.56 -0.1096 MIMAT0000302 cel-miR-246 179472 cat-4 cgaggaugggcUUUGUACAUu ||||||||| uuuuguugauaAAACAUGUAa 2 11 465 485 [ce6:V:10566694-10566714:+] 0.6463 150 7 -12.64 -1.2775 MIMAT0000303 cel-miR-247 179472 cat-4 ucuucucuuauccGAGAUCAGu :||||||| ----------aaaUUCUAGUCa 2 10 1 12 [ce6:V:10566230-10566241:+] 0.4793 141 7 -13.02 -0.9946 MIMAT0004216 cel-miR-255 179472 cat-4 gacauuuUUUAGAGAAGUCAaa |||| |:|||||| aauaccuAAAU-UUUUCAGUaa 3 16 757 777 [ce6:V:10567221-10567233,10567315-10567322:+] 0.6712 137 0 -8.90 -0.2040 MIMAT0000697 cel-miR-355 179472 cat-4 guaucgaguccGAUUUUGUUu | ||||||| auaaauaaaaaCAAAAACAAu 2 11 184 204 [ce6:V:10566413-10566433:+] 0.4793 142 7 -6.31 -1.0824 MIMAT0000697 cel-miR-355 179472 cat-4 guaucgaguccgaUUUUGUUU ||||||| uaccagauaaauaAAAACAA- 1 9 178 197 [ce6:V:10566407-10566426:+] 0.4793 131 7 -6.01 -1.1962 MIMAT0000697 cel-miR-355 179472 cat-4 guaucgagucCGAUUUUGUuu | ||||||| acauuuuguuGAUAAAACAug 3 12 462 482 [ce6:V:10566691-10566711:+] 0.6463 127 0 -6.89 -0.1233 MIMAT0000699 cel-miR-357 179472 cat-4 ugAGGAC---GUUGCUGACCGUAAAu ||:|| ||:|| |||||||| agUCUUGGGAAAAUGA-UGGCAUUUc 2 22 798 822 [ce6:V:10567343-10567367:+] 0.6214 158 7 -19.51 -0.6949 MIMAT0000700 cel-miR-358 179472 cat-4 cuggaacugucccUAUGGUUa ||||||: aauaaauuacuaaAUACCAGa 2 9 164 184 [ce6:V:10566393-10566413:+] 0.4793 124 0 -9.22 -0.3293 MIMAT0000701 cel-miR-359 179472 cat-4 aagcagucuCUUUCUGGUCACu |||:|||||||| auuaggaauGAAGGACCAGUGa 2 14 255 276 [ce6:V:10566484-10566505:+] 0.4793 161 7 -25.77 -0.6010 MIMAT0000749 cel-lsy-6 179472 cat-4 gcUUUACGCAGAGUAUGUUUu |||| | |: |||||| uuAAAUAAAUAUUUUACAAAg 2 20 370 390 [ce6:V:10566599-10566619:+] 0.5628 127 6 -6.27 -0.2687 MIMAT0004220 cel-miR-785 179472 cat-4 agAUGUGUUUUGUUAA-GUGAAu ||:| :|:| ||| ||||| ugUAUAAUGAGCUAUUACACUUa 2 21 583 605 [ce6:V:10566997-10567019:+] 0.7357 128 0 -10.96 -1.2976 MIMAT0004223 cel-miR-788 179472 cat-4 gacguuUACCUUCAAUCUUCGCCu || |:| | ||||||| ugaaccAUCGGAAU--GAAGCGGc 2 19 666 687 [ce6:V:10567130-10567151:+] 0.6161 147 7 -16.27 -0.7736 MIMAT0004231 cel-miR-796 179472 cat-4 aaUGAUUGGAGU-U--GAUGUAAGGu ||| ::||| | | ||||||| ucACUCCUUUCACAUCCCACAUUCCa 2 22 546 571 [ce6:V:10566960-10566985:+] 0.7296 151 7 -16.15 -0.9645

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score cat-4 RAID00250865 cel-miR-234-3p miRNA MIMAT0000289 cat-4 mRNA 179472 Prediction 0.2202 cat-4 RAID00346275 cel-miR-45-3p miRNA MIMAT0000016 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID00759217 cel-miR-357-3p miRNA MIMAT0000699 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID00937295 cel-mir-253 miRNA MI0000329 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID01011674 cel-miR-796 miRNA MIMAT0004231 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID01181741 cel-miR-44-3p miRNA MIMAT0000015 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID01323579 cel-miR-785-3p miRNA MIMAT0004220 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID01405900 cel-miR-358-3p miRNA MIMAT0000700 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID01534863 cel-miR-61-3p miRNA MIMAT0000033 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID01728054 cel-lsy-6-3p miRNA MIMAT0000749 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID01729255 cel-miR-235-3p miRNA MIMAT0000290 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID01780693 cel-miR-1-3p miRNA MIMAT0000003 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID02365257 cel-miR-60-3p miRNA MIMAT0000032 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID02841321 cel-miR-355-5p miRNA MIMAT0000697 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID02940326 cel-miR-247-3p miRNA MIMAT0000303 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID03226167 cel-miR-788-5p miRNA MIMAT0004223 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID03772731 cel-miR-255-3p miRNA MIMAT0004216 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID03796442 cel-miR-246-3p miRNA MIMAT0000302 cat-4 mRNA 179472 Prediction 0.1828 cat-4 RAID03995131 cel-miR-359 miRNA MIMAT0000701 cat-4 mRNA 179472 Prediction 0.1828