DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015119 cel-miR-247* 176968 ced-2 ccauuaaucuuuGAAAAGAGAu :||||:||| ----aaucguuuUUUUUUUCUa 2 11 1 18 [ce6:IV:1601368-1601385:+] 0.5938 130 0 -7.96 -0.1823 MIMAT0000326 cel-miR-270 176968 ced-2 gaggugacgaUGUAGUACGg |:||||||| auuuauaaugAUAUCAUGCa 2 11 124 143 [ce6:IV:1601491-1601510:+] 0.4446 146 7 -13.93 -1.2034 MIMAT0006774 cel-miR-1832 176968 ced-2 uaGUAGCUAAGCGAGGCGGGu |:|:| |: :||||||| uuCGUUGCCUU-UUCCGCCCa 2 20 149 168 [ce6:IV:1601516-1601535:+] 0.4446 149 7 -24.16 -0.9287 MIMAT0011442 cel-miR-2213 176968 ced-2 aauccgucaggagAAUGUCGAa |||||||| uuccucuaauacaUUACAGCUu 2 10 66 87 [ce6:IV:1601433-1601454:+] 0.4446 145 7 -17.12 -1.0366 MIMAT0011449 cel-miR-1832b* 176968 ced-2 uuucacccggcUCGCUAAGCGAc | :|||||||| ccuugaaauuuAUUGAUUCGCUu 2 13 28 50 [ce6:IV:1601395-1601417:+] 0.4446 148 7 -12.53 -0.4890 MIMAT0011458 cel-miR-2218b* 176968 ced-2 agagugauguuugauGUUUAAa |||||| aaucguuuuuuuuucCAAAUUa 2 8 101 122 [ce6:IV:1601468-1601489:+] 0.4446 120 6 -6.41 -0.3595 MIMAT0000038 cel-miR-66 176968 ced-2 agugUAGGGAUUAGUCACA-GUAc | ||| |||: |||| ||| accgAACCCCAAUUCGUGUCCAUu 2 20 168 191 [ce6:IV:1601535-1601558:+] 0.4446 131 0 -14.00 -0.2426 MIMAT0000047 cel-miR-75 176968 ced-2 acuucggccaaccaUCGAAAUu ||||||| cucuaauacauuacAGCUUUAc 2 9 69 90 [ce6:IV:1601436-1601457:+] 0.4446 140 7 -6.44 -0.6061 MIMAT0000051 cel-miR-79 176968 ced-2 ucGAAACCAUUGGA--UCGAAAUa || | || :| ||||||| ucCUCUAAUACAUUACAGCUUUAc 2 21 67 90 [ce6:IV:1601434-1601457:+] 0.4446 143 7 -6.84 -0.6061 MIMAT0000059 cel-miR-86 176968 ced-2 cugacaccGUUUCGUAAGUGAAu || ::||||||| guccauucCAUUUUGUUCACUUu 2 16 185 207 [ce6:IV:1601552-1601574:+] 0.4446 143 7 -8.39 -0.5143 MIMAT0004220 cel-miR-785 176968 ced-2 agaUGUGUUUUGUUAAGUGAAu |: | | : :||||||| uccAUUCCAUUUUGUUCACUUu 2 20 186 207 [ce6:IV:1601553-1601574:+] 0.4446 143 7 -8.63 -0.5143

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 ced-2; Y41D4B.13 cel-miR-264 137 168 -GUAU-UGUUGU------UGGU--GGGCGG- |||: ||||: :|| :||||| UCAUGCACAAUUUUCGUUGCCUUUUCCGCCC ced-2; Y41D4B.13 cel-miR-265 58 74 UAUGGUGGGAAGGAGGGAGU |||| ::||||||: -CACCAGUUUUCCUCUA--- ced-2; Y41D4B.13 cel-miR-271 153 174 UUAC-GAAAGGGUGGGCCGCU- || ||||:||:||| ||| -UUGCCUUUUCCGCCCACCGAA ced-2; Y41D4B.13 cel-miR-56* 24 51 AUGUUGGG-UUUUAC----CUAGGCGGU :||||: :|||| |||:|||: -UUAACCUUGAAAUUUAUUGAUUCGCUU ced-2; Y41D4B.13 cel-miR-72 138 160 AGUCGAUACG-GUUGU-AG-AACGGA- |||| |||: || |||||| -----CAUGCACAAUUUUCGUUGCCUU ced-2; Y41D4B.13 cel-miR-79 61 91 -UCGAAACCAUUGGA------------UCGAAAUA ||:||| ||| ||||||| CAGUUUU-----CCUCUAAUACAUUACAGCUUUAC ced-2; Y41D4B.13 cel-miR-796 167 196 AAUGA-UUGG-----AGUUGAUGUAAGGU- || |||| ||: | ||||||| -CACCGAACCCCAAUUCGUGUCCAUUCCAU ced-2; Y41D4B.13 cel-miR-264 151 170 GUAUUGUUGUUGGUGGGCGG |:| :| : ||:||| || CGTTGCCTTTTCCGCCCACC ced-2; Y41D4B.13 cel-miR-265 54 72 uauGGUGGGAAGGAGGGAGu ||||| | :|:|||| cctCCACCAGT-TTTCCTCt ced-2; Y41D4B.13 cel-miR-270 126 143 gAGGUGACGAUGUAGUACGg | :| || |:||||||| tTATAATG--ATATCATGCa ced-2; Y41D4B.13 cel-miR-271 152 172 uuAC-GAAAGGGUGGGCCGCU || ||||:||:||| ||| gtTGCCTTTTCCGCCCACCGA ced-2; Y41D4B.13 cel-miR-56* 23 50 AUGUUGGG--UUU---UACCUAGGCGgu | :||||: ||| || |||:||| TTTAACCTTGAAATTTATTGATTCGCtt ced-2; Y41D4B.13 cel-miR-66 166 190 aGUG--UAGGGAUUAGUCACAGuac ||| | ||| |||: ||||| cCACCGAACCCCAATTCGTGTCcat ced-2; Y41D4B.13 cel-miR-72 133 158 agucgaUACG-GUU-GUAG-AACGGA |||| ||| : || |||||| gatatcATGCACAATTTTCGTTGCCT ced-2; Y41D4B.13 cel-miR-270 136 143 ------------GAGGUGACGA-----------UGUAGUACGG :|||| |:||||||| AAUCGUUUUUUUUUCCAAAUUAUAUUUAUAAUGAUAUCAUGCA ced-2; Y41D4B.13 cel-miR-79 83 90 --------------UCGAAACCAUUGGA------------UCGAAAUA ||:||| ||| ||||||| CUUGCCCCUCCACCAGUUUU-----CCUCUAAUACAUUACAGCUUUAC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ced-2 RAID00636564 cel-miR-75-3p miRNA MIMAT0000047 ced-2 mRNA 176968 Prediction 0.2202 ced-2 RAID01584433 cel-miR-785-3p miRNA MIMAT0004220 ced-2 mRNA 176968 Prediction 0.1828 ced-2 RAID02011632 cel-miR-66-5p miRNA MIMAT0000038 ced-2 mRNA 176968 Prediction 0.1828 ced-2 RAID03659210 cel-miR-79-3p miRNA MIMAT0000051 ced-2 mRNA 176968 Prediction 0.2381 ced-2 RAID03904310 cel-miR-86-5p miRNA MIMAT0000059 ced-2 mRNA 176968 Prediction 0.2202