DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015096 cel-miR-46* 176466 cul-1 gacAGUUAUCUGCCGAGAGAa ||| | :| ||||||| gcuUCAUUUUGC-GCUCUCUg 2 19 203 222 [ce6:III:10474973-10474992:+] 0.5203 148 7 -15.08 -0.1578 MIMAT0015097 cel-miR-47* 176466 cul-1 ugacAGUUAUCUGACGAGAGAa ||| | :| ||||||| ggcuUCAUUUUGC-GCUCUCUg 2 19 202 222 [ce6:III:10474972-10474992:+] 0.5203 148 7 -14.30 -0.1578 MIMAT0015097 cel-miR-47* 176466 cul-1 ugaCAGUUAUCUGACGA-GAGAa | || | |||||| |||| ugaGACACU--ACUGCUGCUCUg 2 20 455 475 [ce6:III:10475225-10475245:+] 0.5030 120 0 -13.09 -0.1723 MIMAT0015102 cel-miR-60* 176466 cul-1 uaAAAUACCG--UGAGAAGGU-CAa || | ||| ||| ||||| || auUUGAAGGCUAACU-UUCCACGUu 2 21 568 591 [ce6:III:10475338-10475361:+] 0.5000 121 0 -13.09 -0.3298 MIMAT0015119 cel-miR-247* 176466 cul-1 ccAUUAAUCUUUGAAAAGAGAu ||| || |||||||| uuUAAAUAUUCUAUUUUCUCUu 2 21 11 32 [ce6:III:10474781-10474802:+] 0.5203 152 7 -8.46 -1.2330 MIMAT0000321 cel-miR-265 176466 cul-1 uaUGGUGGGAAGGAGG-GAGu |::||:: |:|||| ||| cuAUUACUUAUUCUCCUCUCc 2 19 136 156 [ce6:III:10474906-10474926:+] 0.5203 126 0 -18.49 -0.8807 MIMAT0000698 cel-miR-356 176466 cul-1 acuaaacaaGCGCAACGAGUu :|| ||||||| ucacacuaaUGCUUUGCUCAg 2 13 525 545 [ce6:III:10475295-10475315:+] 0.4997 148 7 -14.43 -0.3737 MIMAT0015239 cel-miR-786* 176466 cul-1 cauuuaugggguugacUAUAAGc |||||| -uucauuucauuuuaaAUAUUCu 2 8 1 22 [ce6:III:10474771-10474792:+] 0.5203 120 6 -5.62 -0.1246 MIMAT0015267 cel-miR-1829a* 176466 cul-1 auguUUGUUAAUCUUCAGGGGAa || || || |||||| uuuuAAAAACUAUUUUUCCCCUu 2 20 31 53 [ce6:III:10474801-10474823:+] 0.5203 123 6 -13.34 -0.1632 MIMAT0006771 cel-miR-1829c 176466 cul-1 auguuGGUAGAACUUAAA-GCGAa |:: ||| | ||| |||| gggucCUGGCUUCAUUUUGCGCUc 2 19 195 218 [ce6:III:10474965-10474988:+] 0.5203 122 0 -11.58 -0.3405 MIMAT0011434 cel-miR-2209c 176466 cul-1 acaucacauuggccacCAGAAAa |||||| uuuuugauuuuuuuucGUCUUUu 2 8 292 314 [ce6:III:10475062-10475084:+] 0.5030 120 6 -5.62 -0.1014 MIMAT0011447 cel-miR-2216 176466 cul-1 cggauggcugaauUUUACACg ||||||| acaaauuuuugcuAAAUGUGa 2 9 670 690 [ce6:III:10475440-10475460:+] 0.5000 140 7 -9.04 -0.8035 MIMAT0011458 cel-miR-2218b* 176466 cul-1 agaguGAUGUUUGAUGUUUAAa || | :: ||||||| ccgguCUCGACGUGACAAAUUu 2 18 656 677 [ce6:III:10475426-10475447:+] 0.5000 145 7 -13.94 -0.2274 MIMAT0000060 cel-miR-87 176466 cul-1 cguGUG-GACUUUGAAACGAGUg ||| || | :||||||||| cuuCACACUAAUGCUUUGCUCAg 2 20 523 545 [ce6:III:10475293-10475315:+] 0.4997 166 7 -22.56 -0.3678 MIMAT0000288 cel-miR-233 176466 cul-1 ggcGUGUACGCGUAACGAGUu ||| :|| ||||||| ucaCACUAAUGCUUUGCUCAg 2 19 525 545 [ce6:III:10475295-10475315:+] 0.4997 154 7 -19.08 -0.3649 MIMAT0004216 cel-miR-255 176466 cul-1 gacaUUUUUUAGAGAAGUCAAa ||: :| :|:||||||| uuccAAGUGAAUUUUUCAGUUu 2 19 342 363 [ce6:III:10475112-10475133:+] 0.5030 158 7 -13.80 -1.0312 MIMAT0004216 cel-miR-255 176466 cul-1 gacaUUUUUUAG---AGAAGUCAAa ::||| |: |:||||||| accgGGAAAUUUGAAUUUUCAGUUg 2 19 598 622 [ce6:III:10475368-10475392:+] 0.5000 149 7 -11.10 -1.0029 MIMAT0000768 cel-miR-392 176466 cul-1 aguagugugcacUAGCUACUau |||||||| gacaacaaaaaaAUCGAUGAcg 3 11 408 429 [ce6:III:10475178-10475199:+] 0.5030 130 0 -12.48 -0.1326 MIMAT0004220 cel-miR-785 176466 cul-1 agauGUGUUUUGUUAAG-UGAAu :| |||| ||||| |||| aaauUAAAAAAAAAUUCAACUUc 2 19 322 344 [ce6:III:10475092-10475114:+] 0.5030 134 0 -7.74 -1.0597 MIMAT0004223 cel-miR-788 176466 cul-1 gacguuuaccuucaaUCUUCGCCu |||||||| auuguucuucuuuacAGAAGCGGg 2 10 174 197 [ce6:III:10474944-10474967:+] 0.5203 145 7 -16.90 -0.4252

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score cul-1 RAID00157262 cel-miR-255-3p miRNA MIMAT0004216 cul-1 mRNA 176466 Prediction 0.1828 cul-1 RAID01136976 cel-miR-87-3p miRNA MIMAT0000060 cul-1 mRNA 176466 Prediction 0.1828 cul-1 RAID01324428 cel-miR-392-3p miRNA MIMAT0000768 cul-1 mRNA 176466 Prediction 0.1828 cul-1 RAID01543754 cel-miR-233-3p miRNA MIMAT0000288 cul-1 mRNA 176466 Prediction 0.1828 cul-1 RAID01774771 cel-miR-785-3p miRNA MIMAT0004220 cul-1 mRNA 176466 Prediction 0.1828 cul-1 RAID03701293 cel-miR-788-5p miRNA MIMAT0004223 cul-1 mRNA 176466 CLIP-seq//Prediction 0.6478