lin-53
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0005523cel-miR-1022172802lin-53cuACCGCAGGAUUGU-UACUAGaa || : |:|:| | |||||| aaUGUUACCUUGAGAUAUGAUCau322130153[ce6:I:9618241-9618264:-]0.49211320-9.95-0.1001
MIMAT0005523cel-miR-1022172802lin-53cuACCGCAGGAUUGU-UACUAGaa || : |:|:| | |||||| aaUGUUACCUUGAGAUAUGAUCau322130153[ce6:I:9618241-9618264:-]0.49211320-9.95-0.1003
MIMAT0011454cel-miR-2209b172802lin-53acuucguguuggcgaGUAGAGa |||||| ccuucuuuaauuuugCAUCUCa284364[ce6:I:9618330-9618351:-]0.49211206-10.46-0.3710
MIMAT0011454cel-miR-2209b172802lin-53acuucguguuggcgaGUAGAGa |||||| ccuucuuuaauuuugCAUCUCa284364[ce6:I:9618330-9618351:-]0.49211206-10.46-0.3718
MIMAT0011458cel-miR-2218b*172802lin-53agaguGAUGU-UUGAUGUUUAAa :|:|| | ||||||| uaauuUUGCAUCUCAACAAAUUg2185072[ce6:I:9618322-9618344:-]0.49211447-10.94-0.8876
MIMAT0011458cel-miR-2218b*172802lin-53agaguGAUGU-UUGAUGUUUAAa :|:|| | ||||||| uaauuUUGCAUCUCAACAAAUUg2185072[ce6:I:9618322-9618344:-]0.49211447-10.94-0.8887
MIMAT0000054cel-miR-81172802lin-53ugaucGAAAGUGCUAC-UAGAGu |||| |: || ||||| uccuuCUUUAAUUUUGCAUCUCa2184264[ce6:I:9618330-9618352:-]0.49211210-11.45-1.2705
MIMAT0000054cel-miR-81172802lin-53ugaucGAAAGUGCUAC-UAGAGu |||| |: || ||||| uccuuCUUUAAUUUUGCAUCUCa2184264[ce6:I:9618330-9618352:-]0.49211210-11.45-1.2708
MIMAT0000055cel-miR-82172802lin-53ugaccGAAAGUGCUAC-UAGAGu |||| |: || ||||| uccuuCUUUAAUUUUGCAUCUCa2184264[ce6:I:9618330-9618352:-]0.49211210-11.45-1.2705
MIMAT0000055cel-miR-82172802lin-53ugaccGAAAGUGCUAC-UAGAGu |||| |: || ||||| uccuuCUUUAAUUUUGCAUCUCa2184264[ce6:I:9618330-9618352:-]0.49211210-11.45-1.2708
MIMAT0000059cel-miR-86172802lin-53cugacaccGUUUCGUAAGU-GAAu |||| ::|||| ||| caucucaaCAAAUUGUUCAUCUUa2165881[ce6:I:9618313-9618336:-]0.49211230-11.19-1.0923
MIMAT0000059cel-miR-86172802lin-53cugacaccGUUUCGUAAGU-GAAu |||| ::|||| ||| caucucaaCAAAUUGUUCAUCUUa2165881[ce6:I:9618313-9618336:-]0.49211230-11.19-1.0930
MIMAT0000768cel-miR-392172802lin-53aguagugugcacuAGCUACUau ||||||| accugaaauaaauUCGAUGAcc310164185[ce6:I:9618209-9618230:-]0.49211250-9.04-0.1695
MIMAT0000768cel-miR-392172802lin-53aguagugugcacuAGCUACUau ||||||| accugaaauaaauUCGAUGAcc310164185[ce6:I:9618209-9618230:-]0.49211250-9.04-0.1482
MIMAT0004220cel-miR-785172802lin-53agauGUGUUUUGUUAAGU-GAAu || |||: :|||| ||| aucuCAACAAAUUGUUCAUCUUa2195981[ce6:I:9618313-9618335:-]0.49211220-13.34-1.0874
MIMAT0004220cel-miR-785172802lin-53agauGUGUUUUGUUAAGU-GAAu || |||: :|||| ||| aucuCAACAAAUUGUUCAUCUUa2195981[ce6:I:9618313-9618335:-]0.49211220-13.34-1.0882
DNA & RNA Element - miRNAMap
Gene NameMature miRNATarget StartTarget EndmiRNA 3-5AlignmentTarget 5-3
lin-53; rba-2; K07A1.12cel-miR-736786UGACUUGACGGAUGUAGAACGGU- ||:||: |||||| |||---AAAUUGUU--CAUCUUACCAU
lin-53; rba-2; K07A1.12cel-miR-787121GCUUUCUAUG-AUUUUGCUCGAAU- |||| |:||||| |||||-----AAUACGUGAAACGCGCUUAA
lin-53; rba-2; K07A1.12cel-miR-736484ugacUUGACGGAUGUAGAACGGU ||:|| | |||||| |||aacaAATTG--TTCATCTTACCA
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
lin-53RAID01287293cel-miR-82-3pmiRNAMIMAT0000055lin-53mRNA172802Prediction0.1828
lin-53RAID01789315cel-miR-392-3pmiRNAMIMAT0000768lin-53mRNA172802Prediction0.1828
lin-53RAID02230414cel-miR-86-5pmiRNAMIMAT0000059lin-53mRNA172802Prediction0.1828
lin-53RAID03115161cel-miR-81-3pmiRNAMIMAT0000054lin-53mRNA172802Prediction0.1828
lin-53RAID03317587cel-miR-785-3pmiRNAMIMAT0004220lin-53mRNA172802Prediction0.1828