DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015099 cel-miR-51* 173914 pkc-3 acGUGGACAUGGAC--GAAGGUAc || :| ||| || ||||||| uuCAAUU-UACAUGUUCUUCCAUu 2 21 465 487 [ce6:II:5384070-5384092:+] 0.4835 153 7 -11.03 -1.0030 MIMAT0015099 cel-miR-51* 173914 pkc-3 acGUGGACAUGGAC--GAAGGUAc || :| ||| || ||||||| uuCAAUU-UACAUGUUCUUCCAUu 2 21 465 487 [ce6:II:5384070-5384092:+] 0.4835 153 7 -11.03 -1.0047 MIMAT0015114 cel-miR-238* 173914 pkc-3 cgaaacuugcaggcucUUGUAGGu ||||||: uuauuuucuuuuucucAACAUCUg 2 9 151 174 [ce6:II:5383756-5383779:+] 0.5953 124 0 -8.47 -0.1420 MIMAT0015114 cel-miR-238* 173914 pkc-3 cgaaacuugcaggcucUUGUAGGu ||||||: uuauuuucuuuuucucAACAUCUg 2 9 151 174 [ce6:II:5383756-5383779:+] 0.5953 124 0 -8.47 -0.1418 MIMAT0015119 cel-miR-247* 173914 pkc-3 ccAUU-AAUCUUUG-AAAAGAGau ||| ||| | ||||||| ccUAACUUAUUUUCUUUUUCUCaa 3 21 145 168 [ce6:II:5383750-5383773:+] 0.5953 130 0 -6.97 -0.2145 MIMAT0015119 cel-miR-247* 173914 pkc-3 ccAUU-AAUCUUUG-AAAAGAGau ||| ||| | ||||||| ccUAACUUAUUUUCUUUUUCUCaa 3 21 145 168 [ce6:II:5383750-5383773:+] 0.5953 130 0 -6.97 -0.2143 MIMAT0000311 cel-miR-256 173914 pkc-3 augucagaagauACGUAAGGu ||||||:| acaaaaaaaaauUGCAUUUC- 2 10 518 537 [ce6:II:5384123-5384142:+] 0.4835 129 0 -7.71 -0.1934 MIMAT0000311 cel-miR-256 173914 pkc-3 augucagaagauACGUAAGGu ||||||:| acaaaaaaaaauUGCAUUUCa 2 10 518 538 [ce6:II:5384123-5384143:+] 0.4835 129 0 -10.79 -0.4256 MIMAT0000312 cel-miR-257 173914 pkc-3 agugacccaugaggaCUAUGAg |||||| cccacugucuuauacGAUACUa 2 8 93 114 [ce6:II:5383698-5383719:+] 0.5953 120 6 -14.41 -0.1058 MIMAT0000312 cel-miR-257 173914 pkc-3 agugacccaugaggaCUAUGAg |||||| cccacugucuuauacGAUACUa 2 8 93 114 [ce6:II:5383698-5383719:+] 0.5953 120 6 -14.41 -0.1057 MIMAT0015240 cel-miR-788* 173914 pkc-3 gcuaagauuagGUAAAGg |||||| aaaaaaaauugCAUUUC- 2 8 521 537 [ce6:II:5384126-5384142:+] 0.4835 120 6 -5.04 -0.4794 MIMAT0015240 cel-miR-788* 173914 pkc-3 gcuaagauuagGUAAAGg |||||| aaaaaaaauugCAUUUCa 2 8 521 538 [ce6:II:5384126-5384143:+] 0.4835 120 6 -6.85 -0.8235 MIMAT0011457 cel-miR-2218b 173914 pkc-3 cuuuuacuacaucaaACAUCAGa ||||||| gaagacuacgaucaaUGUAGUCu 2 9 388 410 [ce6:II:5383993-5384015:+] 0.4666 140 7 -11.85 -0.6501 MIMAT0011457 cel-miR-2218b 173914 pkc-3 cuuuuacuacaucaaACAUCAGa ||||||| gaagacuacgaucaaUGUAGUCu 2 9 388 410 [ce6:II:5383993-5384015:+] 0.4666 140 7 -11.85 -0.6496 MIMAT0011460 cel-miR-2219 173914 pkc-3 gaagucgaaagggAGCGUGAAGc |:|||:||| aaacaaaaaaaaaUUGCAUUUC- 2 11 516 537 [ce6:II:5384121-5384142:+] 0.4835 130 0 -10.34 -0.1456 MIMAT0011460 cel-miR-2219 173914 pkc-3 gaagucgaaagggAGCGUGAAGc |:|||:||| aaacaaaaaaaaaUUGCAUUUCa 2 11 516 538 [ce6:II:5384121-5384143:+] 0.4835 130 0 -10.88 -0.3425 MIMAT0011463 cel-miR-2221 173914 pkc-3 ugaucgccagaccaUAGUGAAc ||||||| auuuucucgcaacaAUCACUUc 2 9 181 202 [ce6:II:5383786-5383807:+] 0.4666 140 7 -7.23 -0.5728 MIMAT0011463 cel-miR-2221 173914 pkc-3 ugaucgccagaccaUAGUGAAc ||||||| auuuucucgcaacaAUCACUUc 2 9 181 202 [ce6:II:5383786-5383807:+] 0.4666 140 7 -7.23 -0.5724 MIMAT0000004 cel-miR-2 173914 pkc-3 cguGUAGUUUCGACCGACACUAu |: :| | :| :|||||| cuuCGGUAUACUUUUUUGUGAUu 2 21 38 60 [ce6:II:5383643-5383665:+] 0.5953 132 6 -9.35 -0.3327 MIMAT0000004 cel-miR-2 173914 pkc-3 cguGUAGUUUCGACCGACACUAu |: :| | :| :|||||| cuuCGGUAUACUUUUUUGUGAUu 2 21 38 60 [ce6:II:5383643-5383665:+] 0.5953 132 6 -9.35 -0.3324 MIMAT0000014 cel-miR-43 173914 pkc-3 cgcuGUCGU-UCAUUUGACACUAu |:|:| | | :|||||| ucuuCGGUAUACUUUUUUGUGAUu 2 20 37 60 [ce6:II:5383642-5383665:+] 0.5953 130 6 -13.18 -0.3355 MIMAT0000014 cel-miR-43 173914 pkc-3 cgcuGUCGU-UCAUUUGACACUAu |:|:| | | :|||||| ucuuCGGUAUACUUUUUUGUGAUu 2 20 37 60 [ce6:II:5383642-5383665:+] 0.5953 130 6 -13.18 -0.3351 MIMAT0000032 cel-miR-60 173914 pkc-3 acuUGAUCUUUUACACGUAUUAu |||| :|| ||||||| cacACUAACUCGUG-GCAUAAUc 2 21 118 139 [ce6:II:5383723-5383744:+] 0.5953 150 7 -10.55 -0.5845 MIMAT0000032 cel-miR-60 173914 pkc-3 acuUGAUCUUUUACACGUAUUAu |||| :|| ||||||| cacACUAACUCGUG-GCAUAAUc 2 21 118 139 [ce6:II:5383723-5383744:+] 0.5953 150 7 -10.55 -0.5840 MIMAT0000039 cel-miR-67 173914 pkc-3 agAUGAGAAAGAUCCUCCAACACu ||| | | | |||||||| cuUACAAUCCCGAAAAGGUUGUGa 2 23 220 243 [ce6:II:5383825-5383848:+] 0.4666 154 7 -15.34 -1.0289 MIMAT0000039 cel-miR-67 173914 pkc-3 agAUGAGAAAGAUCCUCCAACACu ||| | | | |||||||| cuUACAAUCCCGAAAAGGUUGUGa 2 23 220 243 [ce6:II:5383825-5383848:+] 0.4666 154 7 -15.34 -1.0286 MIMAT0000287 cel-miR-232 173914 pkc-3 aguggcgucaaUUCUACGUAAAu || ||||||| caaacaaaaaaAAAUUGCAUUUc 2 13 515 537 [ce6:II:5384120-5384142:+] 0.4835 144 7 -5.42 -1.2519 MIMAT0000287 cel-miR-232 173914 pkc-3 aguggcgucaaUUCUACGUAAAu || ||||||| caaacaaaaaaAAAUUGCAUUUc 2 13 515 537 [ce6:II:5384120-5384142:+] 0.4835 144 7 -5.42 -1.0698 MIMAT0000291 cel-miR-236 173914 pkc-3 ucgcAGUAAUGGACU-GUCAUAau ||:| :| | | |||||| uaacUCGUGGCAUAAUCAGUAUcc 3 20 123 146 [ce6:II:5383728-5383751:+] 0.5953 134 0 -10.47 -0.1338 MIMAT0000291 cel-miR-236 173914 pkc-3 ucgcAGUAAUGGACU-GUCAUAau ||:| :| | | |||||| uaacUCGUGGCAUAAUCAGUAUcc 3 20 123 146 [ce6:II:5383728-5383751:+] 0.5953 134 0 -10.47 -0.1336 MIMAT0000306 cel-miR-250 173914 pkc-3 acgguUGUCAACUGACACUAa |:| || :|||||| ucgguAUACUUUUUUGUGAUu 2 17 40 60 [ce6:II:5383645-5383665:+] 0.5953 136 6 -11.24 -0.3300 MIMAT0000306 cel-miR-250 173914 pkc-3 acgguUGUCAACUGACACUAa |:| || :|||||| ucgguAUACUUUUUUGUGAUu 2 17 40 60 [ce6:II:5383645-5383665:+] 0.5953 136 6 -11.24 -0.3297 MIMAT0000697 cel-miR-355 173914 pkc-3 guaucgaguccgauUUUGUUu |||||| acuuauuuauugacAAACAAa 2 8 502 522 [ce6:II:5384107-5384127:+] 0.4835 120 6 -6.21 -0.4355 MIMAT0000697 cel-miR-355 173914 pkc-3 guaucgaguccgauUUUGUUu |||||| acuuauuuauugacAAACAAa 2 8 502 522 [ce6:II:5384107-5384127:+] 0.4835 120 6 -6.21 -0.3349 MIMAT0000699 cel-miR-357 173914 pkc-3 ugaggacguugcugacCGUAAAu |||||| caaacaaaaaaaaauuGCAUUUc 2 8 515 537 [ce6:II:5384120-5384142:+] 0.4835 120 6 -5.29 -0.4760 MIMAT0000699 cel-miR-357 173914 pkc-3 ugaggacguugcugacCGUAAAu |||||| caaacaaaaaaaaauuGCAUUUc 2 8 515 537 [ce6:II:5384120-5384142:+] 0.4835 120 6 -5.29 -0.1965 MIMAT0004219 cel-miR-784 173914 pkc-3 agaugcaugcgucuAACACGGu ||||||| aucugacacuucuuUUGUGCCa 2 9 418 439 [ce6:II:5384023-5384044:+] 0.4835 140 7 -16.13 -0.7658 MIMAT0004219 cel-miR-784 173914 pkc-3 agaugcaugcgucuAACACGGu ||||||| aucugacacuucuuUUGUGCCa 2 9 418 439 [ce6:II:5384023-5384044:+] 0.4835 140 7 -16.13 -0.7653 MIMAT0004227 cel-miR-792 173914 pkc-3 agacuuucaacuucucUAAAGUu |||||| aacaaaaaaaaauugcAUUUCAa 2 8 517 539 [ce6:II:5384122-5384144:+] 0.4135 120 6 -4.43 -0.2267 MIMAT0004232 cel-miR-797 173914 pkc-3 agAAG-AGUAACA-CUAACGACACUAu ||| ||: | | || :|||||| uuUUCUUCGGUAUACUUUUUUGUGAUu 2 24 34 60 [ce6:II:5383639-5383665:+] 0.5953 137 6 -12.97 -0.3327 MIMAT0004232 cel-miR-797 173914 pkc-3 agAAG-AGUAACA-CUAACGACACUAu ||| ||: | | || :|||||| uuUUCUUCGGUAUACUUUUUUGUGAUu 2 24 34 60 [ce6:II:5383639-5383665:+] 0.5953 137 6 -12.97 -0.3324

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 pkc-3; aPKC; F09E5.1 cel-miR-2 221 246 CGUGUA---GUUUCGACCGACACUAU :||| |:|| ||:|||||| UUACAAUCCCGAAAA-GGUUGUGAUU pkc-3; aPKC; F09E5.1 cel-miR-242 380 399 -AGCUUCGUUUCCGGAUGCGUU |:| :||:||| ||||| AUUGCGGCGAAGA-CUACGA-- pkc-3; aPKC; F09E5.1 cel-miR-246 349 380 -CGAGGAU------GGGCUU--UGUACAUU- |||| ||:||| |:|||||| AGCUCAUUCAUUUCCCUGAAAUAUAUGUAAA pkc-3; aPKC; F09E5.1 cel-miR-248 420 447 -ACUCGCAAU-AGGCACG-UGCACAUA ||| | |||| ||||||: CUGACACUUCUUUUGUGCCACGUGUGG pkc-3; aPKC; F09E5.1 cel-miR-249 188 218 CCGUUGCGAGUUUU------CAGGACACU- ||||| ||| |||:||||: CGCAACAAUCACUUCUACUCGUCUUGUGGU pkc-3; aPKC; F09E5.1 cel-miR-250 228 247 ACGGUUG--UCAACUGACACUAA- ||:| :|| ||||||| -CCCGAAAAGGU----UGUGAUUU pkc-3; aPKC; F09E5.1 cel-miR-253 78 101 GGAAGGGUGUU----GCGGAUGAUU |||||: |||| |||: --AUCCCAUCUCCUUCGCCCACUGU pkc-3; aPKC; F09E5.1 cel-miR-265 307 333 UAUGGU-GGGAAGGA------GGGAGU ||| ||||||: ||:|| -GACCUCCCCUUCUAAAUACACCUUCU pkc-3; aPKC; F09E5.1 cel-miR-358 280 297 CUGGAACUGUCCCUAUGGUUA |||| :||| ||||| --ACUUGCUAGGAAUACCU-- pkc-3; aPKC; F09E5.1 cel-miR-46 106 121 ACUUCUCUCGCUGAGGUACUGU- |||: |:|||||| --------ACGAUACUAUGACAC pkc-3; aPKC; F09E5.1 cel-miR-49 418 439 -AGAC-GUCGAAGAGCACCACGAA |||| || |||||: |||| AUCUGACA-CUUCUUUU-GUGCC- pkc-3; aPKC; F09E5.1 cel-miR-63 121 150 AAAGGUUGAGCGA------AGUCACAGUAU- |:||||||: ||||| || || --ACUAACUCGUGGCAUAAUCAGUAUCCUAA pkc-3; aPKC; F09E5.1 cel-miR-67 200 245 -AGAUGAGA--AAGAUC--------------CU---CCAACACU ||||||| || |:| || |||||||| UUCUACUCGUCUUGUGGUAUCUUACAAUCCCGAAAAGGUUGUGAU pkc-3; aPKC; F09E5.1 cel-miR-74 402 441 -ACAUCUGA----CGGUA-------AAGA----ACGGU- ||||| || ||||| |||| ||||| AUGUAGUCUCUUCGCCAUCUGACACUUCUUUUGUGCCAC pkc-3; aPKC; F09E5.1 cel-miR-77 287 310 ACCUGUC-GAUACCGGACUACUU ||| ||| ||:|||||| AGGAAUACCUAAUGCUUGAUGAC pkc-3; aPKC; F09E5.1 cel-miR-784 392 441 AGAUGCA---UGCGU---------------CU--------AACACGGU ||||| |:|:| || |||||||| ACUACGAUCAAUGUAGUCUCUUCGCCAUCUGACACUUCUUUUGUGCCAC pkc-3; aPKC; F09E5.1 cel-miR-790 402 441 -GCGCCAC--AAGCGCU---------------CACGGUUC :|: || ||||| | |||||| AUGUAGUCUCUUCGCCAUCUGACACUUCUUUUGUGCCAC- pkc-3; aPKC; F09E5.1 cel-miR-791 414 441 ACGGAAUAGACGCCU-------CACGGUUU ||| ||||| |||||| CGCC--AUCUGACACUUCUUUUGUGCCAC- pkc-3; aPKC; F09E5.1 cel-miR-793 255 298 -AGAC------AGAU--------------UGAUUC-UAUGGAGU |||| |||| :|||:| |||||| UUCUGUUAAAAUCUAGACUAUUCAUACUUGCUAGGAAUACCUA- pkc-3; aPKC; F09E5.1 cel-miR-84 104 131 -AUGUUAUAA---UGUAUGAUGGAGU- |||:||| ||| |||| |||: AUACGAUACUAUGACACACUAACUCGU pkc-3; aPKC; F09E5.1 cel-miR-242 381 402 AGCUUCGUUUCCGGAUGC--GUU |:| :||:|| | ||||| ||| TTGCGGCGAA-GACTACGATCAA pkc-3; aPKC; F09E5.1 cel-miR-246 350 378 CGAG------GAUGGGCUU--UGUACAUU |||| :| ||:||| |:|||||| GCTCATTCATTTCCCTGAAATATATGTAA pkc-3; aPKC; F09E5.1 cel-miR-248 421 446 ACU-CGCAAUAGGCAC-GUGCACAua ||| | | |::||| ||||||| TGACACTTCTTTTGTGCCACGTGTgg pkc-3; aPKC; F09E5.1 cel-miR-250 227 245 ACGGUUGUCAACUGACACUAA | ||:| | |::||||||| TCCCGAAA--AGGTTGTGATT pkc-3; aPKC; F09E5.1 cel-miR-253 81 100 GGAAGGGUGUUGCGGAUGAuu || ||:| | |||| ||| CCATCTC-CTTCGCCCACTgt pkc-3; aPKC; F09E5.1 cel-miR-265 291 317 UAUGG--UGGGAA-----GGAGGGagu ||||| |: ||| |||||| ATACCTAATGCTTGATGACCTCCCctt pkc-3; aPKC; F09E5.1 cel-miR-358 278 298 cugGAACUGUCCCUAUGGUUa |||| :||| ||||| | ataCTTGCTAGGAATACCTAa pkc-3; aPKC; F09E5.1 cel-miR-46 98 119 acuucucucGCUGAGGUACUGU |||: |:|||||| tgtcttataCGATACTATGACA pkc-3; aPKC; F09E5.1 cel-miR-49 419 439 AGAC-GUCGAAGAGCACCACGaa |||| || |||||: | |||| TCTGACA-CTTCTT-TTGTGCca pkc-3; aPKC; F09E5.1 cel-miR-63 119 136 aaaGGUUGAGCGAAGUCACAGUAU |:||||| ||| |||| acaCTAACTC------GTGGCATA pkc-3; aPKC; F09E5.1 cel-miR-67 219 243 AG-AUGAGAAAGAUCCUCCAACACU || ||| | | | ||||||||| TCTTACAATCCCGAAAAGGTTGTGA pkc-3; aPKC; F09E5.1 cel-miR-74 387 418 aCAUCUGACG---GU------AAAGAA-CGGU | ||||| | || | |||| |||| cGAAGACTACGATCAATGTAGTCTCTTCGCCA pkc-3; aPKC; F09E5.1 cel-miR-784 419 439 AGA-UGCAUGCGUCUAACACGGU ||| || || : |||||||| TCTGAC--ACTTCTTTTGTGCCA pkc-3; aPKC; F09E5.1 cel-miR-790 420 441 gcgccacAAGCGCUCACGGUuc ||| : |||||| ctgacacTTCTTTTGTGCCAcg pkc-3; aPKC; F09E5.1 cel-miR-791 414 441 aCGGAAUAGAC-------GCCUCACGGUuu ||| ||||| : |||||| cGCC--ATCTGACACTTCTTTTGTGCCAcg pkc-3; aPKC; F09E5.1 cel-miR-793 276 298 AGACAGAUUGAUUC-UAUGGAgu || || :|||:| |||||| TCATACTTGCTAGGAATACCTaa pkc-3; aPKC; F09E5.1 cel-miR-84 105 129 AUGUU---AUAAUGUAUGAUGGAGu |||:| ||| ||| |||| ||| TACGATACTATGACACACTAACTCg pkc-3; aPKC; F09E5.1 cel-miR-67 236 243 AGAUGAGAAAGAU--CC------------------UCCAACACU ||||||| ||| || ||||||||| UCUACUCG-UCUUGUGGUAUCUUACAAUCCCGAAAAGGUUGUGAU pkc-3; aPKC; F09E5.1 cel-miR-784 432 439 AGAUGCAUGCGUCU-----------------------AACACGGU |:|:|| |||||||| GAUCA--AUGUAGUCUCUUCGCCAUCUGACACUUCUUUUGUGCCAC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score pkc-3 RAID00126201 cel-miR-357-3p miRNA MIMAT0000699 pkc-3 mRNA 173914 Prediction 0.1828 pkc-3 RAID00246727 cel-miR-236-3p miRNA MIMAT0000291 pkc-3 mRNA 173914 Prediction 0.1828 pkc-3 RAID00297904 cel-miR-2-3p miRNA MIMAT0000004 pkc-3 mRNA 173914 Prediction 0.1828 pkc-3 RAID01273765 cel-miR-232-3p miRNA MIMAT0000287 pkc-3 mRNA 173914 Prediction 0.1828 pkc-3 RAID01388340 cel-miR-43-3p miRNA MIMAT0000014 pkc-3 mRNA 173914 Prediction 0.1828 pkc-3 RAID01618351 cel-miR-797-5p miRNA MIMAT0004232 pkc-3 mRNA 173914 Prediction 0.1828 pkc-3 RAID01724503 cel-miR-60-3p miRNA MIMAT0000032 pkc-3 mRNA 173914 Prediction 0.2381 pkc-3 RAID02183232 cel-miR-355-5p miRNA MIMAT0000697 pkc-3 mRNA 173914 Prediction 0.1828 pkc-3 RAID03083915 cel-miR-792-3p miRNA MIMAT0004227 pkc-3 mRNA 173914 Prediction 0.1828 pkc-3 RAID03629819 cel-miR-784-5p miRNA MIMAT0004219 pkc-3 mRNA 173914 Prediction 0.2202 pkc-3 RAID03911204 cel-miR-67-3p miRNA MIMAT0000039 pkc-3 mRNA 173914 Prediction 0.2381 pkc-3 RAID04042023 cel-miR-250-3p miRNA MIMAT0000306 pkc-3 mRNA 173914 Prediction 0.2202