DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015111 cel-miR-124* 177617 hgrs-1 ugAUUUCAGUGAUCCCACGUACg ||| |:| ||||||| gcUAACCCAAUUUUUGUGCAUGa 2 22 127 149 [ce6:IV:8201555-8201577:-] 0.4794 145 7 -14.93 -1.2145 MIMAT0015116 cel-miR-240* 177617 hgrs-1 guaagAUCAGAGUUUUAGGAGc |||| | ||||||| ugugaUAGU-GAACAAUCCUCu 2 18 57 77 [ce6:IV:8201627-8201647:-] 0.4794 147 7 -11.08 -0.5450 MIMAT0015119 cel-miR-247* 177617 hgrs-1 ccauUAAUCUUUGAAAAGAGAu ||| | :||||:||| uacuAUU-CAUUUUUUUUUCUa 2 19 237 257 [ce6:IV:8201447-8201467:-] 0.4794 132 0 -7.96 -0.1271 MIMAT0004229 cel-miR-794 177617 hgrs-1 ucacUGUUGCUACUAA-UGGAGu |||||| || || ||||| guauACAACG-UGCUUCACCUCc 2 19 195 216 [ce6:IV:8201488-8201509:-] 0.4794 132 0 -15.81 -0.4677 MIMAT0015241 cel-miR-797* 177617 hgrs-1 uaaagugucuuuGGUUACUUUu :|||||||| auuauuuuuuuuUCAAUGAAAc 2 11 259 280 [ce6:IV:8201424-8201445:-] 0.4794 146 7 -8.26 -0.6542 MIMAT0011457 cel-miR-2218b 177617 hgrs-1 cuuUUACU---ACA-UCAAACAUCAGa ||||| ||| | ||||||||| cccAAUGAUUCUGUAAAUUUGUAGUCu 2 21 21 47 [ce6:IV:8201657-8201683:-] 0.4794 166 7 -18.13 -1.0632 MIMAT0014446 cel-miR-2953-5p 177617 hgrs-1 uaaaAGUGCUUGUGAAGACAu || | ||:: |||||| uaaaUC-CCAAUGAUUCUGUa 2 18 16 35 [ce6:IV:8201669-8201688:-] 0.4794 123 6 -9.95 -0.2201 MIMAT0000001 cel-let-7 177617 hgrs-1 uugAUAUGUUGGAUGA--UGGAGu |||||||| |:|| ||||| cugUAUACAACGUGCUUCACCUCc 2 20 193 216 [ce6:IV:8201488-8201511:-] 0.4794 131 0 -21.12 -0.4846 MIMAT0000004 cel-miR-2 177617 hgrs-1 cgUGUAGUUUCGACCGACACUAu |:||||| ||||||| ugAUAUCAA------CUGUGAUa 2 22 47 63 [ce6:IV:8201641-8201657:-] 0.4794 142 7 -15.46 -1.0479 MIMAT0000014 cel-miR-43 177617 hgrs-1 cgcugucguucAUUUGACACUAu | ||||||||| guagucugauaUCAACUGUGAUa 2 13 41 63 [ce6:IV:8201641-8201663:-] 0.4794 152 7 -16.11 -1.0732 MIMAT0000020 cel-miR-49 177617 hgrs-1 agacgucgAAGAGCACCACGAa ||:|| ||||||| auacccugUUUUC-UGGUGCUa 2 15 93 113 [ce6:IV:8201591-8201611:-] 0.4794 152 7 -16.47 -0.8351 MIMAT0000056 cel-miR-83 177617 hgrs-1 aaUGACUUAAAUAUACCACGAu || :||| | ||||||| auACCCUGUUU-UCUGGUGCUa 2 21 93 113 [ce6:IV:8201591-8201611:-] 0.4794 150 7 -15.02 -0.8657 MIMAT0000306 cel-miR-250 177617 hgrs-1 acGGUUGUCAACUGACACUAa |::|:| | |||||||| guCUGAUA-UCAACUGUGAUa 2 20 44 63 [ce6:IV:8201641-8201660:-] 0.4794 153 7 -12.73 -1.0707 MIMAT0004215 cel-miR-253 177617 hgrs-1 ggaaGGGUGU-UGCGGAUGAUu ||| || : ||||||| acacCCCCCAUUUUCCUACUAu 2 18 221 242 [ce6:IV:8201462-8201483:-] 0.4794 148 7 -20.17 -1.1563 MIMAT0004232 cel-miR-797 177617 hgrs-1 agAAGAGUAACACUA-A--CGACACUAu ||: :| | |||| | ||||||| aaUUUGUAGUCUGAUAUCAACUGUGAUa 2 24 36 63 [ce6:IV:8201641-8201668:-] 0.4794 153 7 -12.86 -1.0681

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 hgrs-1; C07G1.5; CELE_C07G1.5 cel-let-7 195 217 UUGAUAUGUUGGAUGA--UGGAGU |||||||| |:|| ||||| --GUAUACAACGUGCUUCACCUCC hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-2 48 65 CGUGUAGUUUCGACCGACACUAU- |:||||| |||||||| -GAUAUCAA------CUGUGAUAG hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-231 188 211 AAGACGGACAACUAGUGCUCGAAU :||:|||| ||| |||| -AUUGUCUGUAUACAACGUGCUUC hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-250 51 69 ACGGUUGUCAACUGACACUAA :|||| |||: |||| -AUCAACUG-UGAUAGUGAA- hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-252 96 122 AAUGGACG-----CCGUGAUGAUGAAUA ||||: ||::||||| ||: --CCCUGUUUUCUGGUGCUACUUUUUGA hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-253 223 243 -GGAAGGGUGUUGCGGAUGAUU || ||||: ||||||| ACCC-CCCAUUUU-CCUACUAU hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-257 104 128 AGUGACC-C-AUG-AGGACUAUGAG- |||| | ||| |::||| |||| --UCUGGUGCUACUUUUUGAAACUCG hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-264 194 219 GUAU-UGUUGUU---GGUGGGCGG- :|| |||||: :||||: || UGUAUACAACGUGCUUCACCUCCCC hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-265 67 86 UAUGGUGGGAAGGAGGGAGU || |:||| :|||:||| -AACAAUCCUCUCUCUCUCU hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-272 217 241 -GUUUGUGGGUAC-----GGAUGU ||||||||| ||||| CCAAACACCCCCCAUUUUCCUACU hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-37 142 174 UGACGU----UCACAAG--------UGGGCCACU |||| ||||||| |||| || -GUGCAUGAAAGUGUUCAUUUAUGAACCCAGUA- hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-38 94 112 -UGAGGUCAAAAAGAGGGCCACU || || ||| |:|:|||| UAC-CCUGUU----UUCUGGUGC hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-43 25 65 CGCUGU--CGUU----CAU----------UUGACACUAU- :||: |:|| ||| |||||||||| AUGAUUCUGUAAAUUUGUAGUCUGAUAUCAACUGUGAUAG hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-49 97 114 AGACGUCGAAGAGCACCACGAA |||: |:|| ||||||| CCUGU----UUUC-UGGUGCUA hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-83 93 115 AAUGACUUAAAUAUACCACGAU- ||| :||| |||||||| AUACCCUGUUUUC-UGGUGCUAC hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-84 197 217 -AUGUUAUAAUGUAUGA--UGGAGU |||| ||:|:|| ||||| AUACA-----ACGUGCUUCACCUCC hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-86 139 164 CUGACACCGU---UUCGUAAGUGAAU- :||| ||| |||::||||:||| -UUUGU-GCAUGAAAGUGUUCAUUUAU hgrs-1; C07G1.5; CELE_C07G1.5 cel-let-7 193 216 uugAUAUGUUGGAUGA--UGGAGu |||||||| |:|| ||||| ctgTATACAACGTGCTTCACCTCc hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-2 47 63 cgUGUAGUUUCGACCGACACUAU |:||||| |||||||| tgATATCAA------CTGTGATA hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-231 187 210 AAGACGGACAACUAGUGCUCGAAu | :||:|||| | ||| |||| TATTGTCTGTATACAACGTGCTTc hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-252 94 118 aauGGAC-----GCCGUGAUGAUGAAua |||| :|| |:|||||| tacCCTGTTTTCTGG---TGCTACTTtt hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-253 212 242 GGAAGGG--UGUUG--------CGGAUGAUu ||| ||| ||| | ||||||| CCTCCCCAAACACCCCCCATTTTCCTACTAt hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-257 102 126 AGUGACC-C-AUG-AGGACUAUGAG |: |||| | ||| |::||| |||| TTTCTGGTGCTACTTTTTGAAACTC hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-264 210 229 GUAUUGUUGUUGGUGGGCGG || | ||| ||||| || CACCTCCCCAAACACCCCCC hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-265 66 85 uaUGGUGGGAAGGAGGGAGu || |:||| :|||:||| gaACAATCCTCTCTCTCTCt hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-272 218 240 GUUUGU---GGGU--ACGGAUGu |||||| |||| | ||||| CAAACACCCCCCATTTTCCTACt hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-37 145 174 ugACGUUCACAAG--------UGGGCCAcu || |||||||| |||| || caTGAAAGTGTTCATTTATGAACCCAGTaa hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-38 95 111 UGAGGUCAAAAAGAGGGCCACu || || ||| |:|:|||| AC-CCTGTT----TTCTGGTGc hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-43 42 63 cgCUGUCGUUCAUUUGACACUAU | | | | | |||||||||| taGTCTG-ATATCAACTGTGATA hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-49 97 113 aGACGUCGAAGAGCACCACGAa ||| ||:|| ||||||| cCTG----TTTTC-TGGTGCTa hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-84 193 216 auguUAUAAUGUAUGA--UGGAGu ||| ||:|:|| ||||| ctgtATACAACGTGCTTCACCTCc hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-86 138 162 cugACACCG---UUUCGUAAGUGAAU ||| || ||||::||||:||| tttTGT-GCATGAAAGTGTTCATTTA hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-2 56 63 CG--------------------------UGUAGUUUCGACCGACACUAU |:||||| |||||||| CCCAAUGAUUCUGUAAAUUUGUAGUCUGAUAUCAA------CUGUGAUAG hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-250 56 63 AC-----------------------GGUUGUCAACUGACACUAA | |:| |||||||| CCCAAUGAUUCUGUAAAUUUGUAGUCUGAUAUCA-ACUGUGAUA hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-253 235 242 ------------------------GGAAGGGUGUUGCGGAUGAUU || ||||: ||||||| CAACGUGCUUCACCUCCCCAAACACCC-CCCAUUUU-CCUACUAU hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-43 56 63 C----GCUGU--CGUU----CAU----------UUGACACUAU :||: |:|| ||| |||||||||| CCCAAUGAUUCUGUAAAUUUGUAGUCUGAUAUCAACUGUGAUAG hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-49 106 113 A--------------------------GACGUCGAAGAGCACCACGAA |||: |:|| ||||||| AUCCUCUCUCUCUCUCUCUCAUAUACCCUGU----UUUC-UGGUGCUA hgrs-1; C07G1.5; CELE_C07G1.5 cel-miR-83 106 113 A----------------------AUGACUUAAAUAUACCACGAU ||| :||| |||||||| AUCCUCUCUCUCUCUCUCUCAUAUACCCUGUUUUC-UGGUGCUAC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score hgrs-1 RAID00163707 cel-miR-43-3p miRNA MIMAT0000014 hgrs-1 mRNA 177617 CLIP-seq//Prediction 0.6478 hgrs-1 RAID00635799 cel-miR-49-3p miRNA MIMAT0000020 hgrs-1 mRNA 177617 CLIP-seq//Prediction 0.6478 hgrs-1 RAID01291720 cel-miR-253-3p miRNA MIMAT0004215 hgrs-1 mRNA 177617 Prediction 0.1828 hgrs-1 RAID01481028 cel-miR-86-5p miRNA MIMAT0000059 hgrs-1 mRNA 177617 CLIP-seq 0.5483 hgrs-1 RAID02067632 cel-miR-250-3p miRNA MIMAT0000306 hgrs-1 mRNA 177617 CLIP-seq//Prediction 0.6478 hgrs-1 RAID02370584 cel-let-7-5p miRNA MIMAT0000001 hgrs-1 mRNA 177617 Prediction 0.1828 hgrs-1 RAID02795334 cel-miR-83-3p miRNA MIMAT0000056 hgrs-1 mRNA 177617 CLIP-seq//Prediction 0.6478 hgrs-1 RAID03206488 cel-mir-253 miRNA MI0000329 hgrs-1 mRNA 177617 Prediction 0.1828 hgrs-1 RAID03336209 cel-miR-797-5p miRNA MIMAT0004232 hgrs-1 mRNA 177617 CLIP-seq//Prediction 0.6478 hgrs-1 RAID03843690 cel-miR-2-3p miRNA MIMAT0000004 hgrs-1 mRNA 177617 CLIP-seq//Prediction 0.6478