DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000312 cel-miR-257 179259 rpm-1 agugacccAUGAGGACUAUGAg | :| :||||||| aauuauauUUUUAUUGAUACUu 2 15 206 227 [ce6:V:8805421-8805442:-] 0.5029 146 7 -10.58 -1.2669 MIMAT0015240 cel-miR-788* 179259 rpm-1 gcuaAGAUUAGGUAAAGg ||| | ||||||| ucugUCUUA-CCAUUUCc 2 15 124 140 [ce6:V:8805508-8805524:-] 0.5043 148 7 -14.49 -1.1594 MIMAT0005031 cel-miR-1018 179259 rpm-1 gacAUUCAGGUU--ACUAGAGAGa | ||| ||| ||||||||| uguUCAGUACAAAUUGAUCUCUCu 2 20 103 126 [ce6:V:8805522-8805545:-] 0.5043 166 7 -20.89 -0.7913 MIMAT0005033 cel-miR-1020 179259 rpm-1 gacuuucacaguguCUUAUUa |||||| uaaauagaucuauuGAAUAAa 2 8 234 254 [ce6:V:8805394-8805414:-] 0.5016 120 6 -3.66 -0.2754 MIMAT0006775 cel-miR-1833 179259 rpm-1 cgUGUGAAUAAAGCG-UUCGGAGc | |: ||| |: ||||||| uuAAAUCUAUCCGGUAAAGCCUCu 2 22 16 39 [ce6:V:8805609-8805632:-] 0.5485 148 7 -11.83 -1.1362 MIMAT0006776 cel-miR-1834 179259 rpm-1 aaccuagaguuaccAACUAGAGa |||||||| cuguucaguacaaaUUGAUCUCu 2 10 102 124 [ce6:V:8805524-8805546:-] 0.5043 145 7 -16.29 -0.9962 MIMAT0011431 cel-miR-2209a* 179259 rpm-1 cuuccucuucucaccAAUGUGag |||||| uauuuuuauugauacUUACACau 3 9 211 233 [ce6:V:8805415-8805437:-] 0.5029 120 0 -6.57 -0.1668 MIMAT0011432 cel-miR-2209a 179259 rpm-1 acaucaCAUUGGCGACUAGAGa ||| :||||||| uguucaGUACAAAUUGAUCUCu 2 17 103 124 [ce6:V:8805524-8805545:-] 0.5043 144 7 -15.10 -0.9962 MIMAT0011433 cel-miR-2209c* 179259 rpm-1 uuuguucugcacgccAAUGUGag |||||| uauuuuuauugauacUUACACau 3 9 211 233 [ce6:V:8805415-8805437:-] 0.5029 120 0 -4.38 -0.1684 MIMAT0011453 cel-miR-2209b* 179259 rpm-1 cuuccucuucucaacAAUGUGa |||||| uauuuuuauugauacUUACACa 2 8 211 232 [ce6:V:8805416-8805437:-] 0.5029 120 6 -4.18 -0.5381 MIMAT0011458 cel-miR-2218b* 179259 rpm-1 agaGUGAUGUUUGAUGUUUAAa | ||:: | |||||||| ugcCUCUGUUCAGUACAAAUUg 2 20 97 118 [ce6:V:8805530-8805551:-] 0.5043 155 7 -13.27 -0.7541 MIMAT0011458 cel-miR-2218b* 179259 rpm-1 agAGUGAUGUUUGAUGUUUAAa |:|:|: | :|||| ||| uuUUAUUGAUACUUACACAUUa 2 21 214 235 [ce6:V:8805413-8805434:-] 0.5029 128 0 -8.62 -0.1376 MIMAT0000032 cel-miR-60 179259 rpm-1 acuugaucuuuuacacGUAUUAu |||||| --------------uuCAUAAUu 2 8 1 9 [ce6:V:8805639-8805647:-] 0.5927 120 6 -4.09 -0.1173 MIMAT0000043 cel-miR-71 179259 rpm-1 agugaUGGGUACAGAAAGu | :|| ||||||| auagcAGUCA-GUCUUUCu 2 15 41 58 [ce6:V:8805590-8805607:-] 0.5043 144 7 -11.64 -0.7788 MIMAT0000053 cel-miR-80 179259 rpm-1 agccGA-AAGU--UGAUU-ACUAGAGu || |||| || || ||||||| gccuCUGUUCAGUACAAAUUGAUCUCu 2 20 98 124 [ce6:V:8805524-8805550:-] 0.5043 156 7 -13.04 -0.9933 MIMAT0000054 cel-miR-81 179259 rpm-1 ugaucgaAAGUGCUACUAGAGu | || ||||||| uguucagUACAAAUUGAUCUCu 2 16 103 124 [ce6:V:8805524-8805545:-] 0.5043 143 7 -11.68 -0.9992 MIMAT0000055 cel-miR-82 179259 rpm-1 ugaccgaAAGUGCUACUAGAGu | || ||||||| uguucagUACAAAUUGAUCUCu 2 16 103 124 [ce6:V:8805524-8805545:-] 0.5043 143 7 -11.68 -0.9992 MIMAT0000293 cel-miR-238 179259 rpm-1 agacuUACCGUAGCC---UCAUGUUu || || || | ||||||| ucccuAUUGCCUCUGUUCAGUACAAa 2 19 90 115 [ce6:V:8805533-8805558:-] 0.5043 149 7 -10.13 -0.9695 MIMAT0000294 cel-miR-239a 179259 rpm-1 ggUCAUGGAUACACAUCAUGUUu | |:||| ||| ||||||| cuAUUGCCUCUGUUCAGUACAAa 2 22 93 115 [ce6:V:8805533-8805555:-] 0.5043 169 7 -19.77 -0.9602 MIMAT0000295 cel-miR-239b 179259 rpm-1 gucAUGAAAACACAUCAUGUUu |:| | ||| ||||||| uauUGCCUCUGUUCAGUACAAa 2 20 94 115 [ce6:V:8805533-8805554:-] 0.5043 159 7 -11.28 -0.9664 MIMAT0000307 cel-miR-251 179259 rpm-1 uuauucucgccguggugAUGAAUu |||||| aauuauauuuuuauugaUACUUAc 2 8 206 229 [ce6:V:8805419-8805442:-] 0.5029 120 6 -7.57 -0.1610 MIMAT0000308 cel-miR-252 179259 rpm-1 aauggacgccGUGAUGAUGAAUa :|:|: |||||| auuauauuuuUAUUGAUACUUAc 2 14 207 229 [ce6:V:8805419-8805441:-] 0.5029 121 6 -7.72 -0.1610 MIMAT0004227 cel-miR-792 179259 rpm-1 agACUUUCAACUUCUCUAAAGuu | |: |||| |||||| uuUUAGUGUUGUUUUGAUUUCua 3 22 176 198 [ce6:V:8805450-8805472:-] 0.5043 133 0 -9.19 -0.3008

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 rpm-1; syd-3; C01B7.6 cel-let-7 83 104 -UUGAUAUGUUGGAUGAUGGAGU ||:||| ||||:|:|||| AAAUUAUUC--CCUAUUGCCUCU rpm-1; syd-3; C01B7.6 cel-miR-239a 92 117 -GGUCAUGGAUACACAUCAUGUUU- |:| |:||| ||| |||||||| CCUAUUGCCUCUGUUCAGUACAAAU rpm-1; syd-3; C01B7.6 cel-miR-239b 96 117 GUCAUGAAAACACAUCAUGUUU- |:| ||| |||||||| --UUGCCUCUGUUCAGUACAAAU rpm-1; syd-3; C01B7.6 cel-miR-35 20 32 UGACGAUCAAAGGUGGGCCACU ||:|:||||| ---------AUCUAUCCGGUA- rpm-1; syd-3; C01B7.6 cel-miR-58 94 125 -UAACGG--------CAUGACUUGCUAGAGU |||||| |||| :|||||| UAUUGCCUCUGUUCAGUACAAAUUGAUCUCU rpm-1; syd-3; C01B7.6 cel-miR-65 169 189 AAGCCAAUGCGAAGUCACAGUAU ||||:| :||:|||||::| --GGGUUGC-UUUUAGUGUUGUU rpm-1; syd-3; C01B7.6 cel-miR-73 114 143 -UGACUU----GACGGAU--GUAGAACGGU- |:||| |||:|| |||:| ||| AAUUGAUCUCUCUGUCUUACCAUUU--CCAA rpm-1; syd-3; C01B7.6 cel-let-7 84 103 UUGAUAUGUUGGAUGAUGGAGu ||:||| | ||||:|:|||| AATTATTC--CCTATTGCCTCt rpm-1; syd-3; C01B7.6 cel-miR-239a 93 115 GGUCAUGGAUACACAUCAUGUUU |:| |:||| ||| |||||||| CTATTGCCTCTGTTCAGTACAAA rpm-1; syd-3; C01B7.6 cel-miR-35 11 32 ugacgaucaaAGGUGGGCCAcu ||:|:||||| tatttttaaaTCTATCCGGTaa rpm-1; syd-3; C01B7.6 cel-miR-58 95 124 UAACGG--------CAUGACUUGCUAGAGu |||||| |||| | :|||||| ATTGCCTCTGTTCAGTACAAATTGATCTCt rpm-1; syd-3; C01B7.6 cel-miR-65 167 188 aagCCAAUGCGAAGUCACAGUAu ||||:| :||:|||||::| acgGGTTGC-TTTTAGTGTTGTt rpm-1; syd-3; C01B7.6 cel-miR-73 115 135 UGACUUGACGGAUGUAGAACGGU |:||| || || ::|||| ||| ATTGATCT--CTCTGTCTTACCA rpm-1; syd-3; C01B7.6 cel-miR-239a 108 115 --------------------GGUCAUGGAUACACAUCAUGUUU |:| |:||| ||| |||||||| GUUCAAAUAGAAAUUAUUCCCUAUUGCCUCUGUUCAGUACAAAU rpm-1; syd-3; C01B7.6 cel-miR-239b 108 115 GUC---------------------AUGAAAACACAUCAUGUUU |:| ||| |||||||| GUUCAAAUAGAAAUUAUUCCCUAUUGCCUCUGUUCAGUACAAAU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score rpm-1 RAID00213753 cel-miR-238-3p miRNA MIMAT0000293 rpm-1 mRNA 179259 Prediction 0.1828 rpm-1 RAID00324732 cel-miR-252-5p miRNA MIMAT0000308 rpm-1 mRNA 179259 Prediction 0.1828 rpm-1 RAID00333982 cel-miR-81-3p miRNA MIMAT0000054 rpm-1 mRNA 179259 Prediction 0.2202 rpm-1 RAID00687123 cel-miR-792-3p miRNA MIMAT0004227 rpm-1 mRNA 179259 Prediction 0.1828 rpm-1 RAID00796567 cel-miR-239a-5p miRNA MIMAT0000294 rpm-1 mRNA 179259 Prediction 0.1828 rpm-1 RAID01089978 cel-miR-71-5p miRNA MIMAT0000043 rpm-1 mRNA 179259 Prediction 0.2202 rpm-1 RAID01192730 cel-miR-80-3p miRNA MIMAT0000053 rpm-1 mRNA 179259 Prediction 0.2202 rpm-1 RAID02236130 cel-miR-58a-3p miRNA MIMAT0000030 rpm-1 mRNA 179259 Prediction 0.1828 rpm-1 RAID03381472 cel-miR-60-3p miRNA MIMAT0000032 rpm-1 mRNA 179259 Prediction 0.1828 rpm-1 RAID03545146 cel-miR-82-3p miRNA MIMAT0000055 rpm-1 mRNA 179259 Prediction 0.2381 rpm-1 RAID03696883 cel-miR-251 miRNA MIMAT0000307 rpm-1 mRNA 179259 Prediction 0.1828 rpm-1 RAID04002531 cel-miR-239b-5p miRNA MIMAT0000295 rpm-1 mRNA 179259 Prediction 0.1828