DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015091 cel-let-7* 179878 sel-10 cauuccaucuuuUAACGUAUCAAGu || ||||||| uugauuuccuuuAUACAAUAGUUCa 2 14 340 364 [ce6:V:13822697-13822721:+] 0.4373 141 7 -9.27 -0.9115 MIMAT0015091 cel-let-7* 179878 sel-10 cauuccaucuuuUAACGUAUCAAGu || ||||||| uugauuuccuuuAUACAAUAGUUCa 2 14 340 364 [ce6:V:13822697-13822721:+] 0.4373 141 7 -9.27 -1.0278 MIMAT0015108 cel-miR-75* 179878 sel-10 aaauucgaACGU--UGGCUGAc |||| ||||||| gccaguacUGCAACACCGACUc 2 13 959 980 [ce6:V:13823369-13823390:+] 0.7465 147 7 -15.31 -0.6925 MIMAT0000052 cel-miR-227 179878 sel-10 caAGUCUUAGUACAGCUU-UCGa ||| || : | |||| ||| cuUCAUAAAAGAGGCGAAGAGCa 2 21 1019 1041 [ce6:V:13823474-13823496:+] 0.7619 120 0 -8.93 -0.5075 MIMAT0015110 cel-miR-84* 179878 sel-10 cggcucAAUCAACUUUGUAACAc || || |:||||||| caacgcUUCGUGUAGACAUUGUg 2 18 1089 1111 [ce6:V:13823592-13823614:+] 0.5862 157 7 -16.06 -0.2551 MIMAT0015119 cel-miR-247* 179878 sel-10 ccauuaaucuuuGA-AAAGAGAu || ||||||| ucucacacucuuCUCUUUCUCUu 2 11 237 259 [ce6:V:13822594-13822616:+] 0.4373 141 7 -8.63 -0.4151 MIMAT0015119 cel-miR-247* 179878 sel-10 ccauuaaucuuuGA-AAAGAGAu || ||||||| ucucacacucuuCUCUUUCUCUu 2 11 237 259 [ce6:V:13822594-13822616:+] 0.4373 141 7 -8.63 -0.5405 MIMAT0000324 cel-miR-268 179878 sel-10 ugguuugacgaagauUAAGAACGg :||||||| cccuguacauagaauGUUCUUGCu 2 10 20 43 [ce6:V:13822377-13822400:+] 0.4884 141 7 -12.03 -0.3731 MIMAT0000324 cel-miR-268 179878 sel-10 ugguuugacgaagauUAAGAACGg :||||||| cccuguacauagaauGUUCUUGCu 2 10 20 43 [ce6:V:13822377-13822400:+] 0.4884 141 7 -12.03 -0.4924 MIMAT0000326 cel-miR-270 179878 sel-10 gagGUGACGA---UGUAGUACgg || |||| |:|||||| caaCAAUGCUAUCAUAUCAUGga 3 18 83 105 [ce6:V:13822440-13822462:+] 0.4884 136 0 -14.30 -0.1383 MIMAT0015241 cel-miR-797* 179878 sel-10 uaAAGUGUCUUUG-GUUACUUUu || | || : |||||||| aaUUGAGCCAACUACAAUGAAAa 2 21 790 812 [ce6:V:13823147-13823169:+] 0.4979 147 7 -10.87 -0.7437 MIMAT0006587 cel-miR-1820 179878 sel-10 cuuGUAGUAGCUUUUUGUUAGUUUu || ||| | | ||||||| cucCAACAUACAUCAUGAAUCAAAu 2 23 768 792 [ce6:V:13823125-13823149:+] 0.4979 154 7 -10.99 -0.5183 MIMAT0006587 cel-miR-1820 179878 sel-10 cuuGUAGUAGCUUUUUGUUAGUUuu | ||||: | |||||| ugcCCUCAUUUUUA---AAUCAAca 3 23 66 87 [ce6:V:13822423-13822444:+] 0.4884 122 0 -4.33 -0.1307 MIMAT0006771 cel-miR-1829c 179878 sel-10 auguuGGUAGAACUUAAAGCGAa || |||| ||||||| cgguuCCCUCUU--UUUUCGCUu 2 19 424 444 [ce6:V:13822781-13822801:+] 0.4652 151 7 -15.31 -0.7881 MIMAT0006771 cel-miR-1829c 179878 sel-10 auguuGGUAGAACUUAAAGCGAa || |||| ||||||| cgguuCCCUCUU--UUUUCGCUu 2 19 424 444 [ce6:V:13822781-13822801:+] 0.4652 151 7 -15.31 -0.9242 MIMAT0011425 cel-miR-2207 179878 sel-10 gaaUAUGUGUCAGAGUUAAGUGu || | :| | ||||||||| gagAU-CUUACUAUCAAUUCACu 2 21 1173 1194 [ce6:V:13823676-13823697:+] 0.7205 158 7 -12.63 -0.9838 MIMAT0011446 cel-miR-2215 179878 sel-10 uuuguugugcgcgauGCUAAGa |||||| cauaauaauaaauauCGAUUCg 2 8 577 598 [ce6:V:13822934-13822955:+] 0.4979 120 6 -11.34 -0.1200 MIMAT0011462 cel-miR-2220 179878 sel-10 gaCAUUCAGGUGUUUGUUAAcu |||:||: |: ||||||| aaGUAGGUUAAU-AACAAUUau 3 21 554 574 [ce6:V:13822911-13822931:+] 0.4979 146 0 -12.28 -0.1141 MIMAT0011463 cel-miR-2221 179878 sel-10 ugaUCGCCAGACCAUAG-UGAAc ||| ||: | ||| |||| uggAGCUGUUCGAGAUCUACUUa 2 20 907 929 [ce6:V:13823317-13823339:+] 0.7465 123 0 -9.47 -0.8369 MIMAT0014446 cel-miR-2953-5p 179878 sel-10 uaaaAGUGCUUGUGAAG-ACAu |||| |||:|||| ||| gagaUCAC-AACGCUUCGUGUa 2 18 1082 1102 [ce6:V:13823537-13823539,13823588-13823605:+] 0.6069 131 0 -19.65 -0.3251 MIMAT0000001 cel-let-7 179878 sel-10 uugaUAUGUUGGAUGAU-GGAGu || ||| | ||| |||| caaaAUUCAAAGUUCUACCCUCg 2 19 469 491 [ce6:V:13822826-13822848:+] 0.4615 122 0 -12.60 -0.6172 MIMAT0000001 cel-let-7 179878 sel-10 uugaUAUGUUGGAUGAU-GGAGu || ||| | ||| |||| caaaAUUCAAAGUUCUACCCUCg 2 19 469 491 [ce6:V:13822826-13822848:+] 0.4615 122 0 -12.60 -0.7651 MIMAT0000021 cel-miR-50 179878 sel-10 ggGUUCUUAUGGUCUGUAUAGu ||| |||:|:| |||||| auCAACAAUGCUA-UCAUAUCa 2 21 81 101 [ce6:V:13822438-13822458:+] 0.4884 138 6 -18.09 -0.1031 MIMAT0000025 cel-miR-54 179878 sel-10 gagccuaaUACUUCUAAU-GCCCAu || ||| ||| ||||| uguuucccAUUAAG-UUAUCGGGUu 2 17 266 289 [ce6:V:13822623-13822646:+] 0.4373 122 0 -11.70 -0.6638 MIMAT0000025 cel-miR-54 179878 sel-10 gagccuaaUACUUCUAAU-GCCCAu || ||| ||| ||||| uguuucccAUUAAG-UUAUCGGGUu 2 17 266 289 [ce6:V:13822623-13822646:+] 0.4373 122 0 -11.70 -0.8012 MIMAT0000031 cel-miR-59 179878 sel-10 guAGUAGGACUAUUU---GCUAAGCu |||| | ||||| ||||||| uuUCAUAAUAAUAAAUAUCGAUUCGu 2 22 574 599 [ce6:V:13822931-13822956:+] 0.4979 164 7 -15.39 -0.9982 MIMAT0000031 cel-miR-59 179878 sel-10 guAGUAGGACUAUUU---GCUAAGCu |||| | ||||| ||||||| uuUCAUAAUAAUAAAUAUCGAUUCGu 2 22 574 599 [ce6:V:13822931-13822956:+] 0.4979 164 7 -15.39 -0.9827 MIMAT0000032 cel-miR-60 179878 sel-10 acUUGAUCUU-UUACACGUAUUAu ||: | || || | |||||| uuAAUAACAAUUAU-UUCAUAAUa 2 22 561 583 [ce6:V:13822918-13822940:+] 0.4979 122 6 -5.60 -0.2631 MIMAT0000032 cel-miR-60 179878 sel-10 acUUGAUCUU-UUACACGUAUUAu ||: | || || | |||||| uuAAUAACAAUUAU-UUCAUAAUa 2 22 561 583 [ce6:V:13822918-13822940:+] 0.4979 122 6 -5.60 -0.3742 MIMAT0000034 cel-miR-62 179878 sel-10 gacauucgaucuaauGUAUAGu |||||| aaucaacaaugcuauCAUAUCa 2 8 80 101 [ce6:V:13822437-13822458:+] 0.4884 120 6 -9.98 -0.1137 MIMAT0000035 cel-miR-63 179878 sel-10 aaaggUUG-AGCGAAGUCACAGUAu ||: ||| ||| ||||||| uaauaAAUAUCGAUUC-GUGUCAUc 2 20 582 605 [ce6:V:13822939-13822962:+] 0.4979 160 7 -17.05 -0.3654 MIMAT0000036 cel-miR-64 179878 sel-10 aagccAUUGCGAAGUCACAGUAu || || ||| ||||||| auaaaUAUCGAUUC-GUGUCAUc 2 19 584 605 [ce6:V:13822941-13822962:+] 0.4979 160 7 -14.36 -0.3684 MIMAT0000037 cel-miR-65 179878 sel-10 aagccaAU-GCGAAGUCACAGUAu || || ||| ||||||| aauaaaUAUCGAUUC-GUGUCAUc 2 18 583 605 [ce6:V:13822940-13822962:+] 0.4979 154 7 -14.36 -0.3713 MIMAT0000038 cel-miR-66 179878 sel-10 agUGUAGGGAUUAGUCACAGUAc | || :| :||: ||||||| auAAAUAUC-GAUUCGUGUCAUc 2 22 584 605 [ce6:V:13822941-13822962:+] 0.4979 155 7 -13.25 -0.3976 MIMAT0000045 cel-miR-73 179878 sel-10 ugaCUUGACGGAUGUAGA-ACGGu |||:| :| | |||| |||| --cGAAUUCUCGA-AUCUCUGCCc 2 21 1 21 [ce6:V:13822358-13822378:+] 0.5899 126 0 -14.13 -0.3859 MIMAT0000045 cel-miR-73 179878 sel-10 ugaCUUGACGGAUGUAGA-ACGGu |||:| :| | |||| |||| --cGAAUUCUCGA-AUCUCUGCCc 2 21 1 21 [ce6:V:13822358-13822378:+] 0.5899 126 0 -14.13 -0.4867 MIMAT0000047 cel-miR-75 179878 sel-10 acuucggccaaccaUCGAAAUu ||||||| agugagugaauaucAGCUUUAu 2 9 672 693 [ce6:V:13823029-13823050:+] 0.4979 140 7 -8.80 -0.4888 MIMAT0000051 cel-miR-79 179878 sel-10 ucgaaAC-CA-UUGGA-UCGAAAUa || || ||: | ||||||| uucagUGAGUGAAUAUCAGCUUUAu 2 18 669 693 [ce6:V:13823026-13823050:+] 0.4979 146 7 -12.83 -0.4820 MIMAT0000057 cel-miR-84 179878 sel-10 auGUUAUAA--UGUAUGAU-GGAGu ||| ||| | :| ||| |||| guCAAAAUUCAAAGUUCUACCCUCg 2 21 467 491 [ce6:V:13822824-13822848:+] 0.4615 123 0 -11.59 -0.6246 MIMAT0000057 cel-miR-84 179878 sel-10 auGUUAUAA--UGUAUGAU-GGAGu ||| ||| | :| ||| |||| guCAAAAUUCAAAGUUCUACCCUCg 2 21 467 491 [ce6:V:13822824-13822848:+] 0.4615 123 0 -11.59 -0.7724 MIMAT0000059 cel-miR-86 179878 sel-10 cugacaccguuucgUAAGUGAau ||||||| agaucuuacuaucaAUUCACUgu 3 10 1174 1196 [ce6:V:13823677-13823699:+] 0.7205 125 0 -7.04 -0.1851 MIMAT0000061 cel-miR-90 179878 sel-10 uccccguaaguuuguuGUAUAGu |||||| aaaucaacaaugcuauCAUAUCa 2 8 79 101 [ce6:V:13822436-13822458:+] 0.4884 120 6 -10.66 -0.1137 MIMAT0000284 cel-miR-229 179878 sel-10 gcUACCUUUUCUA-UUGGUCACAGUAa || ||| || :|:: ||||||| uaAUAAUAAAUAUCGAUUCGUGUCAUc 2 25 579 605 [ce6:V:13822936-13822962:+] 0.4979 159 7 -12.54 -0.3915 MIMAT0000284 cel-miR-229 179878 sel-10 gcuaCCUUUUCUAUU-GGU-CACAG-UAa |||||| || ::| ||||| || uugaGGAAAAACGAAUUUAUGUGUCUAUu 2 23 142 170 [ce6:V:13822499-13822527:+] 0.4487 124 0 -16.63 -0.3234 MIMAT0000284 cel-miR-229 179878 sel-10 gcuaCCUUUUCUAUU-GGU-CACAG-UAa |||||| || ::| ||||| || uugaGGAAAAACGAAUUUAUGUGUCUAUu 2 23 142 170 [ce6:V:13822499-13822527:+] 0.4487 124 0 -16.63 -0.4337 MIMAT0000285 cel-miR-230 179878 sel-10 agAGGACCAGCGUGUUGAUUAUg ||:|| |: : |||||||| guUCUUGCUU-AGGAACUAAUAu 2 22 35 56 [ce6:V:13822392-13822413:+] 0.4884 155 7 -14.98 -0.5056 MIMAT0000285 cel-miR-230 179878 sel-10 agAGGACCAGCGUGUUGAUUAUg ||:|| |: : |||||||| guUCUUGCUU-AGGAACUAAUAu 2 22 35 56 [ce6:V:13822392-13822413:+] 0.4884 155 7 -14.98 -0.6400 MIMAT0000291 cel-miR-236 179878 sel-10 ucgCAGUAAUGGACUGUCAUAAu |||| | | |||||||| auaGUCAAAAGCCAACAGUAUUg 2 21 108 130 [ce6:V:13822465-13822487:+] 0.4742 160 7 -16.94 -0.6280 MIMAT0000291 cel-miR-236 179878 sel-10 ucgCAGUAAUGGACUGUCAUAAu |||| | | |||||||| auaGUCAAAAGCCAACAGUAUUg 2 21 108 130 [ce6:V:13822465-13822487:+] 0.4742 160 7 -16.94 -0.7660 MIMAT0000307 cel-miR-251 179878 sel-10 uuauUCUCGCCGUGGU---GAUGAAUu :|||| |: | | ||||||| cgguGGAGCUGUUCGAGAUCUACUUAu 2 21 904 930 [ce6:V:13823314-13823340:+] 0.7465 151 7 -14.70 -0.7822 MIMAT0000308 cel-miR-252 179878 sel-10 aaUGGACGCCGUGAUGAUGAAUa | |||: | ||||||| ggAGCUGUUCGAGAUCUACUUAu 2 22 908 930 [ce6:V:13823318-13823340:+] 0.7465 145 7 -14.38 -0.7822 MIMAT0000697 cel-miR-355 179878 sel-10 guaucgaGUCCGAUU-UUGUUu :|||:||| ||||| gauuaagUAGGUUAAUAACAAu 2 15 550 571 [ce6:V:13822907-13822928:+] 0.4979 126 0 -12.26 -0.9816 MIMAT0000697 cel-miR-355 179878 sel-10 guaucgaGUCCGAUU-UUGUUu :|||:||| ||||| gauuaagUAGGUUAAUAACAAu 2 15 550 571 [ce6:V:13822907-13822928:+] 0.4979 126 0 -12.26 -1.0144 MIMAT0004220 cel-miR-785 179878 sel-10 agauguguuUUGUUAAGUGAau | ||||||||| gaucuuacuAUCAAUUCACUgu 3 14 1175 1196 [ce6:V:13823678-13823699:+] 0.7205 137 0 -14.49 -0.1834 MIMAT0004227 cel-miR-792 179878 sel-10 agacuuucaacuucucUAAAGUu |||||| uagguuaauaacaauuAUUUCAu 2 8 557 579 [ce6:V:13822914-13822936:+] 0.4979 120 6 -3.50 -0.1227 MIMAT0004227 cel-miR-792 179878 sel-10 agacuuucaacuucucUAAAGUu |||||| uagguuaauaacaauuAUUUCAu 2 8 557 579 [ce6:V:13822914-13822936:+] 0.4979 120 6 -3.50 -0.2041

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sel-10 RAID00560966 cel-miR-251 miRNA MIMAT0000307 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID00570437 cel-miR-355-5p miRNA MIMAT0000697 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID00662712 cel-miR-792-3p miRNA MIMAT0004227 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID00722009 cel-miR-84-5p miRNA MIMAT0000057 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID00951257 cel-miR-230-3p miRNA MIMAT0000285 sel-10 mRNA 179878 CLIP-seq//Prediction 0.6308 sel-10 RAID01135298 cel-miR-86-5p miRNA MIMAT0000059 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID01168959 cel-miR-63-3p miRNA MIMAT0000035 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID01293768 cel-miR-59-3p miRNA MIMAT0000031 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID01389584 cel-miR-236-3p miRNA MIMAT0000291 sel-10 mRNA 179878 CLIP-seq//Prediction 0.6478 sel-10 RAID01408889 cel-miR-73-3p miRNA MIMAT0000045 sel-10 mRNA 179878 CLIP-seq//Prediction 0.6308 sel-10 RAID01657730 cel-miR-65-5p miRNA MIMAT0000037 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID01663562 cel-miR-50-5p miRNA MIMAT0000021 sel-10 mRNA 179878 CLIP-seq//Prediction 0.6478 sel-10 RAID01820831 cel-miR-75-3p miRNA MIMAT0000047 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID01867094 cel-miR-79-3p miRNA MIMAT0000051 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID02018699 cel-let-7-5p miRNA MIMAT0000001 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID02223361 cel-miR-785-3p miRNA MIMAT0004220 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID02286639 cel-miR-252-5p miRNA MIMAT0000308 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID02380656 cel-miR-54-3p miRNA MIMAT0000025 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID02547663 cel-miR-60-3p miRNA MIMAT0000032 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID02648771 cel-miR-90-3p miRNA MIMAT0000061 sel-10 mRNA 179878 CLIP-seq//Prediction 0.6559 sel-10 RAID03370329 cel-miR-4813-3p miRNA MIMAT0020001 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID03510516 cel-miR-64-5p miRNA MIMAT0000036 sel-10 mRNA 179878 Prediction 0.1828 sel-10 RAID03671343 cel-miR-62 miRNA MIMAT0000034 sel-10 mRNA 179878 CLIP-seq//Prediction 0.6478 sel-10 RAID03848834 cel-miR-229-5p miRNA MIMAT0000284 sel-10 mRNA 179878 CLIP-seq//Prediction 0.6308 sel-10 RAID03928414 cel-miR-66-5p miRNA MIMAT0000038 sel-10 mRNA 179878 Prediction 0.1828