DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015102 cel-miR-60* 179612 hrd-1 uaAAAUACCGUGA-----GAAGGUCAa | |||| :|:| :|||:||| ucUGUAUGCUAUUAUUUGUUUCUAGUa 2 21 97 123 [ce6:V:11769742-11769768:+] 0.5850 131 0 -11.06 -0.1043 MIMAT0015119 cel-miR-247* 179612 hrd-1 ccAUUAAUCUUUGAAAAGAGAu |:||| :::|||||||| ugUGAUUUUCGGUUUUUCUCUc 2 21 40 61 [ce6:V:11769685-11769706:+] 0.5850 160 7 -15.34 -0.7807 MIMAT0015119 cel-miR-247* 179612 hrd-1 ccaUUAAUCUUUG-AAAAGAGAu || |:| | ||||||| uuaAAAUGGUUCCACUUUCUCUc 2 20 140 162 [ce6:V:11769785-11769807:+] 0.5850 142 7 -8.26 -0.6091 MIMAT0000324 cel-miR-268 179612 hrd-1 ugguuuGA-CGA-AGAUUAAGAACGg || |:| ||| |||||||: uaauuuCUCGUUGUCU-AUUCUUGUg 2 19 19 43 [ce6:V:11769664-11769688:+] 0.5850 138 0 -11.96 -0.1293 MIMAT0015240 cel-miR-788* 179612 hrd-1 gcUAAGAUUAGGUAAAGg | || |||||||||| caAGUCCAAUCCAUUUCu 2 17 162 179 [ce6:V:11769807-11769824:+] 0.5850 164 7 -14.55 -1.0512 MIMAT0006587 cel-miR-1820 179612 hrd-1 cuuguaguagcuuuuuguUAGUUUu |||||| uuucuaguaaguuauuauAUCAAAu 2 8 115 139 [ce6:V:11769760-11769784:+] 0.5850 120 6 -3.86 -0.3230 MIMAT0006590 cel-miR-1823 179612 hrd-1 aaUGAGGAUUUGUGAAGGUCAu :|| :|| :::|||:||| auGCUAUUAUUUGUUUCUAGUa 2 21 102 123 [ce6:V:11769747-11769768:+] 0.5850 140 0 -16.84 -0.1032 MIMAT0006769 cel-miR-1829a 179612 hrd-1 uuaucucUUUAAG-GUUACCAAc |||||: ||||||| uuauaucAAAUUUAAAAUGGUUc 2 16 129 151 [ce6:V:11769774-11769796:+] 0.5850 154 7 -7.99 -1.1105 MIMAT0011458 cel-miR-2218b* 179612 hrd-1 agagugauguuugauGUUUAAa |||||| aguaaguuauuauauCAAAUUu 2 8 120 141 [ce6:V:11769765-11769786:+] 0.5850 120 6 -9.12 -0.2964 MIMAT0014446 cel-miR-2953-5p 179612 hrd-1 uaAAAGUGCUUGUGAAGACAu | ||||| :: |||||| uuUCUCACGUGU-AUUCUGUa 2 20 83 102 [ce6:V:11769728-11769747:+] 0.5850 125 6 -16.12 -0.1647 MIMAT0000015 cel-miR-44 179612 hrd-1 ucgacuUACACAGAGAUCAgu || |||:|||||| gcuauuAUUUGUUUCUAGUaa 3 16 104 124 [ce6:V:11769749-11769769:+] 0.5850 143 0 -14.98 -0.3315 MIMAT0000016 cel-miR-45 179612 hrd-1 ucgacuUACACAGAGAUCAgu || |||:|||||| gcuauuAUUUGUUUCUAGUaa 3 16 104 124 [ce6:V:11769749-11769769:+] 0.5850 143 0 -14.98 -0.3315 MIMAT0000033 cel-miR-61 179612 hrd-1 cuacucauuGCCAAGAUCAgu :| ||||||| gcuauuauuUGUUUCUAGUaa 3 13 104 124 [ce6:V:11769749-11769769:+] 0.5850 128 0 -8.28 -0.3315 MIMAT0000043 cel-miR-71 179612 hrd-1 agUGAUGGGU-ACAGA-AAGu |:| |:|: ||||| ||| uaAUUUCUCGUUGUCUAUUCu 2 18 19 39 [ce6:V:11769664-11769684:+] 0.5850 120 0 -11.86 -0.9795 MIMAT0000302 cel-miR-246 179612 hrd-1 cgaggauGGGCUU--UGUACAUu ||:||| || |||| ------uCCUGAAUUACCUGUAa 2 15 1 17 [ce6:V:11769646-11769662:+] 0.5850 121 0 -12.13 -0.2219 MIMAT0000303 cel-miR-247 179612 hrd-1 ucuucucUUAUCCGAGAUCAgu | | | :|||||| ugcuauuAUUUGUUUCUAGUaa 3 16 103 124 [ce6:V:11769748-11769769:+] 0.5850 127 0 -7.27 -0.3315 MIMAT0000304 cel-miR-248 179612 hrd-1 acuCGCAAUAGGCACGUGCACAUa | ||| ||: |||||||| auuGGGUU-UCU---CACGUGUAu 2 22 77 96 [ce6:V:11769722-11769741:+] 0.5850 147 7 -17.37 -0.4927 MIMAT0000700 cel-miR-358 179612 hrd-1 cuggaacugucccUAUGGUUa |||:||| cuaguaaguuauuAUAUCAAa 2 9 118 138 [ce6:V:11769763-11769783:+] 0.5850 124 0 -6.01 -0.1574 MIMAT0004220 cel-miR-785 179612 hrd-1 agaUGUGUUUUGUUAA-GUGAAu |: :||||:::|| ||||| caaAUUUAAAAUGGUUCCACUUu 2 20 135 157 [ce6:V:11769780-11769802:+] 0.5850 131 0 -10.16 -0.9984

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 sel-11; hrd-1; F55A11.3 cel-miR-242 47 79 -AGCUUC---------GUUUCCGGAUGCGUU- |||: ||||| ||||| |:| UUCGGUUUUUCUCUCCCAAAGACCUACUCGAU sel-11; hrd-1; F55A11.3 cel-miR-246 68 97 CGAGGAUGGGCUU----------UGUACAUU |||||:||| ||:|||| --ACCUACUCGAUUGGGUUUCUCACGUGUAU sel-11; hrd-1; F55A11.3 cel-miR-248 78 98 -ACUCGCAAUAGGCACGUGCACAUA- ||:|: ||: ||||||||| UUGGGUU---UCU---CACGUGUAUU sel-11; hrd-1; F55A11.3 cel-miR-265 189 203 UAUGGUGGGAAGGAGGGAGU |:|| ||| ||||: ---ACGCC--UCC-CCCUUG sel-11; hrd-1; F55A11.3 cel-miR-44 103 124 UCGACU-UACACAGAGAUCAGU ||| || |||:|||||| UGCUAUUAUUUGUUUCUAGUA- sel-11; hrd-1; F55A11.3 cel-miR-45 103 124 UCGACU-UACACAGAGAUCAGU ||| || |||:|||||| UGCUAUUAUUUGUUUCUAGUA- sel-11; hrd-1; F55A11.3 cel-miR-63 165 187 AAAGGUUGAGCGAAGUCACAGUAU |||||: | :||| |||||| -GUCCAAUCCAUUUCU-UGUCAUU sel-11; hrd-1; F55A11.3 cel-miR-74 163 186 ACAUCUGAC--GGUAAAGAACGGU- || | ||||||||||:|| --AAGUCCAAUCCAUUUCUUGUCAU sel-11; hrd-1; F55A11.3 cel-miR-797 21 47 AGAAGAGUAACAC-UAACGACACUAU :|||||:|||| ||| :|||||| AUUUCUCGUUGUCUAUUCUUGUGAUU sel-11; hrd-1; F55A11.3 cel-miR-242 57 77 agcuucGUUUCCGGAUGCGUU ||||| ||||| |:| ctctccCAAAGACCTACTCGA sel-11; hrd-1; F55A11.3 cel-miR-246 66 96 cgaGGAUGGGCU----------UUGUACAUu |||||:||| ||:|||| agaCCTACTCGATTGGGTTTCTCACGTGTAt sel-11; hrd-1; F55A11.3 cel-miR-248 77 96 acuCGCAAUAGGCACGUGCACAUA | ||| ||: ||||||||| attGGGTT-TCT---CACGTGTAT sel-11; hrd-1; F55A11.3 cel-miR-265 181 200 uauggugggaaGGAGGGAGu |||||| | gtcatttaacgCCTCCCCCt sel-11; hrd-1; F55A11.3 cel-miR-44 103 124 uCGA-CUUACACAGAGAUCAgu ||| || |||:|||||| tGCTATTATTTGTTTCTAGTaa sel-11; hrd-1; F55A11.3 cel-miR-45 103 124 uCGA-CUUACACAGAGAUCAgu ||| || |||:|||||| tGCTATTATTTGTTTCTAGTaa sel-11; hrd-1; F55A11.3 cel-miR-63 164 186 aaAGGUUGAGCGAAGUCACAGUAu |||||: | :||| |||||| agTCCAATCCATTTC-TTGTCATt sel-11; hrd-1; F55A11.3 cel-miR-74 164 184 aCAUCUGACGGUAAAGAACGGU || | | ||||||||||:|| aGTCCAAT-CCATTTCTTGTCA sel-11; hrd-1; F55A11.3 cel-miR-248 89 96 -------------------------ACUCGCAAUAGGCACGUGCACAUA ||:|: ||: ||||||||| UUUCUCUCCCAAAGACCUACUCGAUUGGGUU---UCU---CACGUGUAUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sel-11 RAID00209573 cel-miR-71-5p miRNA MIMAT0000043 sel-11 mRNA 179612 Prediction 0.1828 sel-11 RAID00696804 cel-miR-244-5p miRNA MIMAT0000300 sel-11 mRNA 179612 Prediction 0.1828 sel-11 RAID00820817 cel-miR-248 miRNA MIMAT0000304 sel-11 mRNA 179612 Prediction 0.2202 sel-11 RAID00878884 cel-miR-358-3p miRNA MIMAT0000700 sel-11 mRNA 179612 Prediction 0.1828 sel-11 RAID00965800 cel-miR-246-3p miRNA MIMAT0000302 sel-11 mRNA 179612 Prediction 0.1828 sel-11 RAID01195837 cel-miR-44-3p miRNA MIMAT0000015 sel-11 mRNA 179612 Prediction 0.1828 sel-11 RAID01322295 cel-miR-785-3p miRNA MIMAT0004220 sel-11 mRNA 179612 Prediction 0.1828 sel-11 RAID03227881 cel-miR-247-3p miRNA MIMAT0000303 sel-11 mRNA 179612 Prediction 0.1828 sel-11 RAID03410530 cel-miR-45-3p miRNA MIMAT0000016 sel-11 mRNA 179612 Prediction 0.1828 sel-11 RAID03888556 cel-miR-61-3p miRNA MIMAT0000033 sel-11 mRNA 179612 Prediction 0.1828