DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015099 cel-miR-51* 180419 sli-1 acguggaCAUGG-ACGAAGGUac | ||: | |||||| uaucauaGAACUAUUCUUCCAca 3 16 55 77 [ce6:X:720652-720674:-] 0.5449 126 0 -9.62 -0.1553 MIMAT0015099 cel-miR-51* 180419 sli-1 acguggaCAUGG-ACGAAGGUac | ||: | |||||| uaucauaGAACUAUUCUUCCAca 3 16 55 77 [ce6:X:720652-720674:-] 0.5449 126 0 -9.62 -0.1573 MIMAT0015109 cel-miR-81* 180419 sli-1 agAGUCUAGUGCCACUUUUGgc ||| || :| |||||| ugUCA-CUC-UGAAGAAAACaa 3 21 367 386 [ce6:X:720343-720362:-] 0.5074 124 0 -9.84 -0.1107 MIMAT0015112 cel-miR-229* 180419 sli-1 gauacugugggcuauGGAAAGa |||||| ucuuuuucgccuacuCCUUUCc 2 8 149 170 [ce6:X:720559-720580:-] 0.5449 120 6 -15.55 -0.1015 MIMAT0015112 cel-miR-229* 180419 sli-1 gauacugugggcuauGGAAAGa |||||| ucuuuuucgccuacuCCUUUCc 2 8 149 170 [ce6:X:720559-720580:-] 0.5449 120 6 -15.55 -0.1029 MIMAT0000328 cel-miR-272 180419 sli-1 guuuguggguaCGGAUGu |||||| auuucuuuuucGCCUACu 2 8 146 163 [ce6:X:720566-720583:-] 0.5449 120 6 -9.36 -0.1222 MIMAT0000328 cel-miR-272 180419 sli-1 guuuguggguaCGGAUGu |||||| auuucuuuuucGCCUACu 2 8 146 163 [ce6:X:720566-720583:-] 0.5449 120 6 -9.36 -0.1238 MIMAT0005031 cel-miR-1018 180419 sli-1 gacaUUCAG-GUUACUAGAGAga | ||: : || |||||| uaaaACGUUAUUAU-AUCUCUau 3 19 126 147 [ce6:X:720582-720603:-] 0.5449 123 0 -6.92 -0.1464 MIMAT0005031 cel-miR-1018 180419 sli-1 gacaUUCAG-GUUACUAGAGAga | ||: : || |||||| uaaaACGUUAUUAU-AUCUCUau 3 19 126 147 [ce6:X:720582-720603:-] 0.5449 123 0 -6.92 -0.1483 MIMAT0006586 cel-miR-1819 180419 sli-1 agGUAGUUCGA-GUU---AGUAAGGu | |:| || ||| ||||||| cgCUUUAUACUGCAAUUUUCAUUCCc 2 21 24 49 [ce6:X:720680-720705:-] 0.5449 146 7 -11.06 -0.9325 MIMAT0006586 cel-miR-1819 180419 sli-1 agGUAGUUCGA-GUU---AGUAAGGu | |:| || ||| ||||||| cgCUUUAUACUGCAAUUUUCAUUCCc 2 21 24 49 [ce6:X:720680-720705:-] 0.5449 146 7 -11.06 -0.9367 MIMAT0006768 cel-miR-1828 180419 sli-1 ugAUAGUGAAUU--UACGAAGGUca |||||: || || |||||| cuUAUCAUAGAACUAUUCUUCCAca 3 22 53 77 [ce6:X:720652-720676:-] 0.5449 144 0 -11.92 -0.1553 MIMAT0006768 cel-miR-1828 180419 sli-1 ugAUAGUGAAUU--UACGAAGGUca |||||: || || |||||| cuUAUCAUAGAACUAUUCUUCCAca 3 22 53 77 [ce6:X:720652-720676:-] 0.5449 144 0 -11.92 -0.1573 MIMAT0006771 cel-miR-1829c 180419 sli-1 auguuGGUAGAACUUAAAGCGaa |:|| || |||||| uaucuCUAU-UUCUUUUUCGCcu 3 19 139 160 [ce6:X:720569-720590:-] 0.5449 128 0 -10.83 -0.1007 MIMAT0011428 cel-miR-2208a* 180419 sli-1 acuucauauggucuuUGACGUa |||||| aucuuaccgcuuuauACUGCAa 2 8 17 38 [ce6:X:720691-720712:-] 0.5449 120 6 -11.88 -0.2655 MIMAT0011428 cel-miR-2208a* 180419 sli-1 acuucauauggucuuUGACGUa |||||| aucuuaccgcuuuauACUGCAa 2 8 17 38 [ce6:X:720691-720712:-] 0.5449 120 6 -11.88 -0.2686 MIMAT0011429 cel-miR-2208b-5p 180419 sli-1 ccuaUAGUCUAGGCCCA-UGUGAa | :||| |: ||| ||||| cgugACUAGAACU-GGUAACACUa 2 20 90 112 [ce6:X:720617-720639:-] 0.5449 121 0 -14.51 -0.8550 MIMAT0011429 cel-miR-2208b-5p 180419 sli-1 ccuaUAGUCUAGGCCCA-UGUGAa | :||| |: ||| ||||| cgugACUAGAACU-GGUAACACUa 2 20 90 112 [ce6:X:720617-720639:-] 0.5449 121 0 -14.51 -0.8596 MIMAT0011444 cel-miR-2214 180419 sli-1 uugcggccAGUUCAACAACAGUUAc |||| || |||||||| uuuuuuuuUCAAAUU-UUGUCAAUu 2 18 172 195 [ce6:X:720534-720557:-] 0.5449 163 7 -9.13 -1.1869 MIMAT0011444 cel-miR-2214 180419 sli-1 uugcggccAGUUCAACAACAGUUAc |||| || |||||||| uuuuuuuuUCAAAUU-UUGUCAAUu 2 18 172 195 [ce6:X:720534-720557:-] 0.5449 163 7 -9.13 -1.1892 MIMAT0011447 cel-miR-2216 180419 sli-1 cggauggcUGAAU---UUUACAcg ||||: |||||| --------ACUUGUGUAAAUGUuc 3 14 1 16 [ce6:X:720713-720728:-] 0.5449 124 0 -5.80 -0.1304 MIMAT0011458 cel-miR-2218b* 180419 sli-1 agagugauguuugauGUUUAAa |||||| uuuccguuuuuuuuuCAAAUUu 2 8 166 187 [ce6:X:720542-720563:-] 0.5449 120 6 -6.30 -0.1046 MIMAT0011458 cel-miR-2218b* 180419 sli-1 agagugauguuugauGUUUAAa |||||| uuuccguuuuuuuuuCAAAUUu 2 8 166 187 [ce6:X:720542-720563:-] 0.5449 120 6 -6.30 -0.1060 MIMAT0011462 cel-miR-2220 180419 sli-1 gacauucAGGUGU--UUGU-UAACu |||||| |||| |||| cuauucuUCCACAACAACAUAUUGc 2 16 65 89 [ce6:X:720640-720664:-] 0.5449 126 0 -12.21 -0.6369 MIMAT0011462 cel-miR-2220 180419 sli-1 gacauucAGGUGU--UUGU-UAACu |||||| |||| |||| cuauucuUCCACAACAACAUAUUGc 2 16 65 89 [ce6:X:720640-720664:-] 0.5449 126 0 -12.21 -0.6418 MIMAT0000035 cel-miR-63 180419 sli-1 aaagguugagcgaagucACAGUAu |||||| cuauugguaagcaaucaUGUCAUa 2 8 216 239 [ce6:X:720490-720513:-] 0.5297 120 6 -11.62 -0.1009 MIMAT0000038 cel-miR-66 180419 sli-1 aguguagggauuagucACAGUAc |||||| uauugguaagcaaucaUGUCAUa 2 8 217 239 [ce6:X:720490-720512:-] 0.5297 120 6 -10.22 -0.1009 MIMAT0000047 cel-miR-75 180419 sli-1 acuucggccaaccauCGAAAUu |||||| aauguucaucuuaccGCUUUAu 2 8 10 31 [ce6:X:720698-720719:-] 0.5449 120 6 -5.23 -0.1294 MIMAT0000047 cel-miR-75 180419 sli-1 acuucggccaaccauCGAAAUu |||||| aauguucaucuuaccGCUUUAu 2 8 10 31 [ce6:X:720698-720719:-] 0.5449 120 6 -5.23 -0.1062 MIMAT0000051 cel-miR-79 180419 sli-1 ucgaaaccauuggauCGAAAUa |||||| aauguucaucuuaccGCUUUAu 2 8 10 31 [ce6:X:720698-720719:-] 0.5449 120 6 -8.36 -0.1282 MIMAT0000051 cel-miR-79 180419 sli-1 ucgaaaccauuggauCGAAAUa |||||| aauguucaucuuaccGCUUUAu 2 8 10 31 [ce6:X:720698-720719:-] 0.5449 120 6 -8.36 -0.1051 MIMAT0000058 cel-miR-85 180419 sli-1 cgugcUGAAAAGU-UUAUGAAACAu || | || || |||||| ugguaACACUACAUCAUUCUUUGUu 2 20 102 126 [ce6:X:720603-720627:-] 0.5449 122 6 -11.84 -0.1318 MIMAT0000058 cel-miR-85 180419 sli-1 cgugcUGAAAAGU-UUAUGAAACAu || | || || |||||| ugguaACACUACAUCAUUCUUUGUu 2 20 102 126 [ce6:X:720603-720627:-] 0.5449 122 6 -11.84 -0.1336 MIMAT0000059 cel-miR-86 180419 sli-1 cuGACACCGUUUCGUAAGU-GAAu :||| |:||| ::|||| ||| acUUGU-GUAAA-UGUUCAUCUUa 2 22 1 22 [ce6:X:720707-720728:-] 0.5449 125 0 -12.75 -0.7924 MIMAT0000059 cel-miR-86 180419 sli-1 cuGACACCGUUUCGUAAGU-GAAu :||| |:||| ::|||| ||| acUUGU-GUAAA-UGUUCAUCUUa 2 22 1 22 [ce6:X:720707-720728:-] 0.5449 125 0 -12.75 -0.6396 MIMAT0004215 cel-miR-253 180419 sli-1 ggAAGGGUGUUGCGGAUGAuu ||:|: : |||||||| uaUUUCUUUUUCGCCUACUcc 3 20 145 165 [ce6:X:720564-720584:-] 0.5449 139 0 -18.79 -0.1032 MIMAT0004215 cel-miR-253 180419 sli-1 ggAAGGGUGUUGCGGAUGAuu ||:|: : |||||||| uaUUUCUUUUUCGCCUACUcc 3 20 145 165 [ce6:X:720564-720584:-] 0.5449 139 0 -18.79 -0.1046 MIMAT0000697 cel-miR-355 180419 sli-1 guaucGAGUCCGAUUUUGUUu ||| | ||||||| ugucaCUCUGAAGAAAACAAg 2 17 367 387 [ce6:X:720342-720362:-] 0.5074 148 7 -11.42 -0.6615

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 sli-1; CELE_M02A10.3; M02A10.3 cel-lin-4 271 304 -AGUGUGAA------------CUCCAGAGUCCCU ||:| | ||| |:||||| CUCGCUGUCCCAGAUUUUACGGAGUUUUCAGGA- sli-1; CELE_M02A10.3; M02A10.3 cel-miR-228 350 373 -GGCACUUAAGUACGUCACGGUAA :|||| |||: |||:|| GUCGUGUAUUUUCUAUGUGUCAC- sli-1; CELE_M02A10.3; M02A10.3 cel-miR-237 273 304 UCGACA---------A-GCUCUUAAGAGUCCCU ||||| | || ||:||:||||| CGCUGUCCCAGAUUUUACG-GAGUUUUCAGGA- sli-1; CELE_M02A10.3; M02A10.3 cel-miR-248 338 360 ACUCGCAAUA-GGCACGUGCACAUA- || || ||: ||||||| --CGCCCCCAACC-UGU-CGUGUAUU sli-1; CELE_M02A10.3; M02A10.3 cel-miR-265 20 54 UAUGGUGG------------GAAG-GAGGGAGU- ||||:|: :||| :|||| || UUACCGCUUUAUACUGCAAUUUUCAUUCCCCCAC sli-1; CELE_M02A10.3; M02A10.3 cel-miR-270 212 238 -GAGG-UGACGAUG---UAGUACGG- |||| |:|| || ||||||:| ACUCCUAUUGGUAAGCAAUCAUGUCA sli-1; CELE_M02A10.3; M02A10.3 cel-miR-34 21 38 GUUGGUCGAUUGGUGUGACGGA ||| ||| ::|:||||| -UACC-GCU--UUAUACUGCA- sli-1; CELE_M02A10.3; M02A10.3 cel-miR-63 342 373 AAAGGUUG---AGCG-----AAGU--CACAGUAU ||||| |||: ||| |||||| --CCCAACCUGUCGUGUAUUUUCUAUGUGUCAC- sli-1; CELE_M02A10.3; M02A10.3 cel-miR-64 218 241 AAGCCAUUGCGA-AGUCACAGUAU- |:||||| || ||| ||||||| AUUGGUAA-GCAAUCA-UGUCAUAU sli-1; CELE_M02A10.3; M02A10.3 cel-miR-74 221 249 ACAUCUG-----ACGGUAAAGAACGGU- ||| :| ||:||| |||||::| GGUAAGCAAUCAUGUCAUAUCUUGUUAA sli-1; CELE_M02A10.3; M02A10.3 cel-lin-4 280 304 aGUGUGAA----CUCCAGAGUCCcu || |:|| ||| |:||||| cCAGATTTTACGGAGTTTTCAGGaa sli-1; CELE_M02A10.3; M02A10.3 cel-miR-228 351 373 gGCACUUAAGUACGU-CACGGUaa |||| |||: | :| |||:|| tCGTGTATTT-TCTATGTGTCAct sli-1; CELE_M02A10.3; M02A10.3 cel-miR-237 282 304 UCGACAA-GCUCUUAAGAGUCCcu || | || || ||:||:||||| AGATTTTACG-GAGTTTTCAGGaa sli-1; CELE_M02A10.3; M02A10.3 cel-miR-248 335 358 acucgcaauaggcacguGCACAUA ||||||| catcgcccccaacctgtCGTGTAT sli-1; CELE_M02A10.3; M02A10.3 cel-miR-265 30 52 UAUG--GUGGGAAG-GAGGGAGU |||| || ::||| :|||| || ATACTGCAATTTTCATTCCCCCA sli-1; CELE_M02A10.3; M02A10.3 cel-miR-270 213 236 GAGG-UGACGAU--G-UAGUACGG |||| |:|| || | ||||||:| CTCCTATTGGTAAGCAATCATGTC sli-1; CELE_M02A10.3; M02A10.3 cel-miR-34 20 38 guUGGUCGAUUGGUGUGACGga ||| ||| ::|:||||| ttACC-GCT--TTATACTGCaa sli-1; CELE_M02A10.3; M02A10.3 cel-miR-63 340 373 aaaGGUUG---AGC-----GAAG-U-CACAGUau ||||| ||| :||| | |||||| cccCCAACCTGTCGTGTATTTTCTATGTGTCAct

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score sli-1 RAID00140163 cel-miR-66-5p miRNA MIMAT0000038 sli-1 mRNA 180419 Prediction 0.1828 sli-1 RAID01209729 cel-miR-253-3p miRNA MIMAT0004215 sli-1 mRNA 180419 Prediction 0.1828 sli-1 RAID01234688 cel-miR-355-5p miRNA MIMAT0000697 sli-1 mRNA 180419 Prediction 0.1828 sli-1 RAID01783811 cel-miR-79-3p miRNA MIMAT0000051 sli-1 mRNA 180419 Prediction 0.1828 sli-1 RAID02020020 cel-miR-86-5p miRNA MIMAT0000059 sli-1 mRNA 180419 Prediction 0.1828 sli-1 RAID02273598 cel-miR-63-3p miRNA MIMAT0000035 sli-1 mRNA 180419 Prediction 0.1828 sli-1 RAID02469379 cel-miR-85-3p miRNA MIMAT0000058 sli-1 mRNA 180419 Prediction 0.2202 sli-1 RAID02830276 cel-miR-75-3p miRNA MIMAT0000047 sli-1 mRNA 180419 Prediction 0.1828