DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000698 cel-miR-356 173296 src-2 acUAAACAAG-CGCAACGAGUu :| ||||| : ||||||| guGUGUGUUCUUUUUUGCUCAa 2 20 70 91 [ce6:I:14328892-14328913:+] 0.4678 154 7 -16.07 -1.2980 MIMAT0005822 cel-miR-1019* 173296 src-2 uuuuacuuugagcuuguuACGAGUg |||||| ucuguguguguucuuuuuUGCUCAa 2 8 67 91 [ce6:I:14328889-14328913:+] 0.4678 120 6 -11.03 -0.2931 MIMAT0015266 cel-miR-1822* 173296 src-2 cggcuaucgaaagggUCUCUUUGa |||||||| --------gagagagAGAGAAACu 2 10 1 16 [ce6:I:14328823-14328838:+] 0.4678 145 7 -11.95 -0.8975 MIMAT0000022 cel-miR-51 173296 src-2 uuGUACCUAUCCUCGAUGCCCAu :|| | || |||||||||| ccUAUAUACAGCAGCUACGGGUu 2 22 25 47 [ce6:I:14328847-14328869:+] 0.4678 169 7 -21.10 -0.2394 MIMAT0000023 cel-miR-52 173296 src-2 ucgugccUUUGU-AUACAUGCCCAc | ||| | ||||||| ugccuauAUACAGCAGCUACGGGUu 2 18 23 47 [ce6:I:14328845-14328869:+] 0.4678 144 7 -13.89 -0.2373 MIMAT0000024 cel-miR-53 173296 src-2 ucgugccUUUGUU-UACAUGCCCAc | |||: | ||||||| ugccuauAUACAGCAGCUACGGGUu 2 18 23 47 [ce6:I:14328845-14328869:+] 0.4678 148 7 -14.56 -0.2373 MIMAT0000025 cel-miR-54 173296 src-2 gagccuaAUACUUC--UAAUGCCCAu ||| || : ||||||| gugccuaUAUACAGCAGCUACGGGUu 2 18 22 47 [ce6:I:14328844-14328869:+] 0.4678 144 7 -12.35 -0.2438 MIMAT0000026 cel-miR-55 173296 src-2 gagucGUCUUUGAAUAUGCCCAu ||| |:| ||||||| auauaCAGCAGC---UACGGGUu 2 19 28 47 [ce6:I:14328850-14328869:+] 0.4678 146 7 -20.53 -0.2233 MIMAT0000028 cel-miR-56 173296 src-2 gagucgccuUUGU-AAUGCCCAu |:|| ||||||| ccuauauacAGCAGCUACGGGUu 2 14 25 47 [ce6:I:14328847-14328869:+] 0.4678 144 7 -17.30 -0.2416 MIMAT0000060 cel-miR-87 173296 src-2 cguguggacuuuGAAACGAGUg :|||||||| guguguguucuuUUUUGCUCAa 2 11 70 91 [ce6:I:14328892-14328913:+] 0.4678 146 7 -12.85 -1.3015 MIMAT0000288 cel-miR-233 173296 src-2 ggCGUGUACG-CGUAACGAGUu |::::| | : ||||||| guGUGUGUUCUUUUUUGCUCAa 2 20 70 91 [ce6:I:14328892-14328913:+] 0.4678 142 7 -14.92 -1.3022

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 src-2; kin-22; F49B2.5 cel-miR-233 63 90 -GGCGUGUACGCGUA-------ACGAGUU |:|: ::||:|::| ||||| UCUGUCUGUGUGUGUUCUUUUUUGCUC-- src-2; kin-22; F49B2.5 cel-miR-250 37 61 ACGGUUGUCAACU--GACACUAA- ||:| :||| :||||||| AGCUACGGGUUUUUUUUGUGAUUU src-2; kin-22; F49B2.5 cel-miR-259 37 62 ACGAUGGUCUAAUCCUACUCUAAA- ||||| :| || ||||| AGCUACGGGUUUUUUUUGUGAUUUU src-2; kin-22; F49B2.5 cel-miR-273 23 48 GUCGGC--UGUGUC----AUGCCCGU ||| |:|||| ||||||: -UGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-43 34 60 CGCUGUCGU---UCAUUU--GACACUAU :|||| :|| :|||||| --AGCAGCUACGGGUUUUUUUUGUGAUU src-2; kin-22; F49B2.5 cel-miR-51 12 48 -UUGU--ACCUA----------UCCUCGAUGCCCAU ||| |||:| || |||||||||| AAACUUUUGGGUGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-52 20 48 -UCGUGCCUU--UGUAUAC-AUGCCCAC :|::| ||| ||||||| GGGUGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-53 20 48 -UCGUGCCUU--UGUUUAC-AUGCCCAC :|::| |||: | ||||||| GGGUGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-54 17 48 GAGCCUA-----AUACUUCUA--AUGCCCAU |:||:| ||| || ||||||| UUUGGGUGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-55 32 48 GAGUCGUCUUUGAAUAUGCCCAU |||||| ||||||| -ACAGCAGC------UACGGGUU src-2; kin-22; F49B2.5 cel-miR-56 32 48 GAGUCGCCUUUGUAAUGCCCAU |||| |:| ||||||| -ACAGC---AGC--UACGGGUU src-2; kin-22; F49B2.5 cel-miR-57 27 48 -UGUGUGUCGAGCUAGAUGUCCCAU |:|:||||| |||| |||| UAUAUACAGCAG---CUAC-GGGUU src-2; kin-22; F49B2.5 cel-miR-797 45 78 AGAAGAGUAACACUA------AC-GACAC-UAU- ||:|: ||||||| || ||||| :|: -GUUUUUUUUGUGAUUUUUUCUGUCUGUGUGUGU src-2; kin-22; F49B2.5 cel-miR-233 68 89 GGCGUGUACGCG---UAACGAGuu |:|::::||: | |||||| CTGTGTGTGTTCTTTTTTGCTC-- src-2; kin-22; F49B2.5 cel-miR-250 34 59 aCG--GUUGUC---AACUGACACUAA || | ||:| || :||||||| aGCAGCTACGGGTTTTTTTTGTGATT src-2; kin-22; F49B2.5 cel-miR-273 22 47 guCGG----CUGU-GUC-AUGCCCgu ||| ||| ||| |||||| gtGCCTATATACAGCAGCTACGGGtt src-2; kin-22; F49B2.5 cel-miR-43 29 59 cgcUGUCGUUCAUUU--------GACACUAu ||||||: || : :|||||| tatACAGCAGCTACGGGTTTTTTTTGTGATt src-2; kin-22; F49B2.5 cel-miR-51 25 47 uugUACCUAUCCUCGAUGCCCAu || | || |||||||||| cctATATACAGCAGCTACGGGTt src-2; kin-22; F49B2.5 cel-miR-54 17 47 gAGCCUA-----AUACUUC--UAAUGCCCAu |:||:| ||| || : ||||||| tTTGGGTGCCTATATACAGCAGCTACGGGTt src-2; kin-22; F49B2.5 cel-miR-55 31 47 gaGUCGUCUUUGAAUAUGCCCAu |||||| | ||||||| taCAGCAG---C---TACGGGTt src-2; kin-22; F49B2.5 cel-miR-56 31 47 gaGUCGCCUUUGUAAUGCCCAu |||| |:| ||||||| taCAGC---AGC--TACGGGTt src-2; kin-22; F49B2.5 cel-miR-57 28 47 UGUGUGUCGAGCUAGAUGUCCCAu |:|:||||| | |||| |||| ATATACAGC---AGCTAC-GGGTt src-2; kin-22; F49B2.5 cel-miR-797 44 75 agAAGAGUAACACUA------AC-GACACuau ||:|: ||||||| || ||||| ggTTTTTTTTGTGATTTTTTCTGTCTGTGtgt src-2; kin-22; F49B2.5 cel-miR-51 40 47 --------UUGU--ACCUA----------UCCUCGAUGCCCAU ||| |||:| || |||||||||| GAGAGAGAAACUUUUGGGUGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-52 40 47 ----------------UCGUGCCUU--UGUAUAC-AUGCCCAC :| | ||| | ||||||| GAGAGAGAAACUUUUGGGUGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-53 40 47 ----------------UCGUGCCUU--UGUUUAC-AUGCCCAC :| | |||: | ||||||| GAGAGAGAAACUUUUGGGUGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-54 40 47 ------------GAGCCUAAUACUUCUA-------AUGCCCAU :|:||:| ||||||| GAGAGAGAAACUUUUGGGUGCCUAUAUACAGCAGCUACGGGUU src-2; kin-22; F49B2.5 cel-miR-55 40 47 GA--------------------------GUCGUCUUUGAAUAUGCCCAU |||||| ||||||| GAGAGAGAAACUUUUGGGUGCCUAUAUACAGCAGC------UACGGGUU src-2; kin-22; F49B2.5 cel-miR-56 40 47 ----------GAGUCGCCU-----------UUGUA-AUGCCCAU ||: :||: |:|| ||||||| GAGAGAGAAACUUU-UGGGUGCCUAUAUACAGCAGCUACGGGUU

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score src-2 RAID00662295 cel-miR-51-5p miRNA MIMAT0000022 src-2 mRNA 173296 Prediction 0.2202 src-2 RAID00925981 cel-miR-55-3p miRNA MIMAT0000026 src-2 mRNA 173296 Prediction 0.2202 src-2 RAID01525281 cel-miR-56-3p miRNA MIMAT0000028 src-2 mRNA 173296 Prediction 0.2381 src-2 RAID01750031 cel-miR-54-3p miRNA MIMAT0000025 src-2 mRNA 173296 Prediction 0.2202 src-2 RAID02995257 cel-miR-53-5p miRNA MIMAT0000024 src-2 mRNA 173296 Prediction 0.2202 src-2 RAID03100426 cel-miR-87-3p miRNA MIMAT0000060 src-2 mRNA 173296 Prediction 0.1828 src-2 RAID03515091 cel-miR-233-3p miRNA MIMAT0000288 src-2 mRNA 173296 Prediction 0.1828 src-2 RAID03869896 cel-miR-52-5p miRNA MIMAT0000023 src-2 mRNA 173296 Prediction 0.2202