DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000027 cel-miR-56* 180690 nck-1 auguugGGUUUUAC-CUAGGCGGu |::| || ||||||| uguuuaCUGAUUUGCCAUCCGCCg 2 18 154 177 [ce6:X:4148865-4148888:-] 0.5511 144 7 -17.10 -0.6235 MIMAT0015118 cel-miR-244* 180690 nck-1 agGAAAUCGACU--UUUCG-UCAu :||| |||: ||||| ||| uuUUUUUUCUGGACAAAGCAAGUg 2 20 86 109 [ce6:X:4148933-4148956:-] 0.4984 122 0 -14.58 -1.0081 MIMAT0015118 cel-miR-244* 180690 nck-1 agGAAAUCGACU--UUUCG-UCAu :||| |||: ||||| ||| uuUUUUUUCUGGACAAAGCAAGUg 2 20 86 109 [ce6:X:4148933-4148956:-] 0.4984 122 0 -14.58 -1.0576 MIMAT0000313 cel-miR-258 180690 nck-1 uuuuccuAAGGA-GAGUUUUGg | |:| :||||||: -----acUACUUGUUCAAAAUu 2 15 1 17 [ce6:X:4149025-4149041:-] 0.6016 129 0 -8.15 -0.4566 MIMAT0000313 cel-miR-258 180690 nck-1 uuuuccuAAGGA-GAGUUUUGg | |:| :||||||: -----acUACUUGUUCAAAAUu 2 15 1 17 [ce6:X:4149025-4149041:-] 0.6016 129 0 -8.15 -0.2496 MIMAT0000698 cel-miR-356 180690 nck-1 acUAAACAAGCGCAACGAGuu | ||| || : |||||| ucAAUUG-UC-UUUUGCUCca 3 20 313 331 [ce6:X:4148711-4148729:-] 0.5511 127 0 -7.59 -0.1013 MIMAT0000698 cel-miR-356 180690 nck-1 acuaaacaagcgcAACGAGUu |||:||| --------acuacUUGUUCAa 2 9 1 13 [ce6:X:4149029-4149041:-] 0.6016 124 0 -8.34 -0.1186 MIMAT0015239 cel-miR-786* 180690 nck-1 cauUUAUGGGGUUG-ACUAUAAGc || |:::|||: |||||| uucAAAAUUUCAAUGCAAUAUUCu 2 21 9 32 [ce6:X:4149010-4149033:-] 0.6016 127 6 -9.82 -0.4181 MIMAT0015239 cel-miR-786* 180690 nck-1 cauUUAUGGGGUUG-ACUAUAAGc || |:::|||: |||||| uucAAAAUUUCAAUGCAAUAUUCu 2 21 9 32 [ce6:X:4149010-4149033:-] 0.6016 127 6 -9.82 -0.2556 MIMAT0015241 cel-miR-797* 180690 nck-1 uaaAGUGUCUUUGGUUACUUuu | |:| :: |||||| augUGAUAACUGUAAAUGAAuu 3 20 383 404 [ce6:X:4148638-4148659:-] 0.6726 123 0 -5.19 -0.1502 MIMAT0005031 cel-miR-1018 180690 nck-1 gacauucAGGUUA-CUAGAGAGa || :|| ||:|||| cacgguuUCAGAUAUAUUUCUCa 2 16 202 224 [ce6:X:4148818-4148840:-] 0.5511 130 0 -9.04 -0.1298 MIMAT0006586 cel-miR-1819 180690 nck-1 agguaguucgaguuAGUAAGgu |||||| gguucuuuuucuuuUCAUUCaa 3 9 235 256 [ce6:X:4148786-4148807:-] 0.5511 120 0 -8.24 -0.3162 MIMAT0006587 cel-miR-1820 180690 nck-1 cuuGUAGUAGCUUUUUGUUAGUUUu || |:| || : |||||| auuCAAGUUUGUAAUUUUAUCAAAu 2 23 251 275 [ce6:X:4148767-4148791:-] 0.5511 122 6 -5.49 -0.2082 MIMAT0011428 cel-miR-2208a* 180690 nck-1 acuucaUAUGGUCU-UUGACGUa |||: || |||||:| auugccAUAUGUGAUAACUGUAa 2 17 375 397 [ce6:X:4148645-4148667:-] 0.6726 135 0 -9.63 -0.1399 MIMAT0011454 cel-miR-2209b 180690 nck-1 acuucguguuGGCGAGUAGAGa || :||||||| cucacacuuuCCAUUCAUCUCu 2 13 288 309 [ce6:X:4148733-4148754:-] 0.5511 148 7 -21.39 -1.1300 MIMAT0011462 cel-miR-2220 180690 nck-1 gacAUUCAGGU---GUUUGUUAACu |||| :|| : |||||||| uuaUAAGCUCAUUCUUAACAAUUGu 2 20 32 56 [ce6:X:4148986-4149010:-] 0.4456 154 7 -14.93 -0.9161 MIMAT0011462 cel-miR-2220 180690 nck-1 gacauucagguguuuGUUAACu |||||| uauuauuuucaauucCAAUUGc 2 8 358 379 [ce6:X:4148663-4148684:-] 0.5709 120 6 -7.21 -0.2130 MIMAT0011462 cel-miR-2220 180690 nck-1 gacAUUCAGGU---GUUUGUUAACu |||| :|| : |||||||| uuaUAAGCUCAUUCUUAACAAUUGu 2 20 32 56 [ce6:X:4148986-4149010:-] 0.4456 154 7 -14.93 -0.9780 MIMAT0000004 cel-miR-2 180690 nck-1 cguguaguuucgaccgACACUAu |||||| aauuccaauugccauaUGUGAUa 2 8 368 390 [ce6:X:4148652-4148674:-] 0.6726 120 6 -11.09 -0.2616 MIMAT0000014 cel-miR-43 180690 nck-1 cgcugucguucauuugACACUAu |||||| aauuccaauugccauaUGUGAUa 2 8 368 390 [ce6:X:4148652-4148674:-] 0.6726 120 6 -8.48 -0.2570 MIMAT0000043 cel-miR-71 180690 nck-1 agugauggguacAGAAAGu |||||| caagugaaaaucUCUUUCg 2 8 104 122 [ce6:X:4148920-4148938:-] 0.5511 120 6 -8.12 -0.1109 MIMAT0000060 cel-miR-87 180690 nck-1 cguGUGGACUUUGAAACGAGug || :|| :||||||| cuuCAAUUG-UCUUUUGCUCca 3 20 311 331 [ce6:X:4148711-4148731:-] 0.5511 129 0 -14.81 -0.1045 MIMAT0000060 cel-miR-87 180690 nck-1 cguguggacuuUGA--AACGAGUg ||| |||:||| -----------ACUACUUGUUCAa 2 12 1 13 [ce6:X:4149029-4149041:-] 0.6016 126 0 -8.00 -0.1198 MIMAT0000283 cel-miR-228 180690 nck-1 ggcACUUAAGUACGUCACGGUAa | ||||| | |||||| uuuUCAAUUC--CAAUUGCCAUa 2 21 363 383 [ce6:X:4148659-4148679:-] 0.6726 121 6 -8.32 -0.4163 MIMAT0000288 cel-miR-233 180690 nck-1 ggcGUGUACGCGUAACGAGuu || ||: : |||||| cuuCAAUUGUCUUUUGCUCca 3 19 311 331 [ce6:X:4148711-4148731:-] 0.5511 130 0 -9.98 -0.1034 MIMAT0000288 cel-miR-233 180690 nck-1 ggcguguacgcguAACGAGUu |||:||| --------acuacUUGUUCAa 2 9 1 13 [ce6:X:4149029-4149041:-] 0.6016 124 0 -11.70 -0.1186 MIMAT0000289 cel-miR-234 180690 nck-1 uucccauaagagcuCGUUAUu |||||| uucaaaauuucaauGCAAUAu 2 8 9 29 [ce6:X:4149013-4149033:-] 0.6016 120 6 -7.07 -0.1232 MIMAT0000290 cel-miR-235 180690 nck-1 aguccggccccucucACGUUAu |||||| uguucaaaauuucaaUGCAAUa 2 8 7 28 [ce6:X:4149014-4149035:-] 0.6016 120 6 -6.80 -0.2930 MIMAT0000290 cel-miR-235 180690 nck-1 aguccggccccucucACGUUAu |||||| uguucaaaauuucaaUGCAAUa 2 8 7 28 [ce6:X:4149014-4149035:-] 0.6016 120 6 -6.80 -0.1612 MIMAT0000306 cel-miR-250 180690 nck-1 acgguugucaacugACACUAa |||||| uuccaauugccauaUGUGAUa 2 8 370 390 [ce6:X:4148652-4148672:-] 0.6726 120 6 -12.50 -0.2616 MIMAT0000307 cel-miR-251 180690 nck-1 uuauucucgccguggUGAUGAAUu |||||||: ---------------ACUACUUGu 2 10 1 9 [ce6:X:4149033-4149041:-] 0.7577 129 0 -7.98 -0.1064 MIMAT0000308 cel-miR-252 180690 nck-1 aauggacgccgugaUGAUGAAUa |||||||: --------------ACUACUUGu 2 10 1 9 [ce6:X:4149033-4149041:-] 0.7577 129 0 -10.75 -0.1064 MIMAT0000310 cel-miR-254 180690 nck-1 ggaugucagcgcuuuCUAAACGu ||||||| uuagauauguuuacuGAUUUGCc 2 9 147 169 [ce6:X:4148873-4148895:-] 0.5511 140 7 -8.26 -0.8068 MIMAT0004227 cel-miR-792 180690 nck-1 agacuuucaacuucucUAAAGUu |||||| --acuacuuguucaaaAUUUCAa 2 8 1 21 [ce6:X:4149021-4149041:-] 0.6016 120 6 -5.93 -0.2959 MIMAT0004227 cel-miR-792 180690 nck-1 agacuuucaacuucucUAAAGUu |||||| --acuacuuguucaaaAUUUCAa 2 8 1 21 [ce6:X:4149021-4149041:-] 0.6016 120 6 -5.93 -0.1428 MIMAT0004232 cel-miR-797 180690 nck-1 agAAGAGUAACACUAACGACACUAu ||| |||| || |||||| aaUUCCAAUUGCCAU--AUGUGAUa 2 24 368 390 [ce6:X:4148652-4148674:-] 0.6726 128 6 -13.02 -0.2421

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 nck-1; CELE_ZK470.5; ZK470.5 cel-miR-256 65 87 AUGUCAGAAGAUACGUA---AGGU- ||||||| |||| |||| ---UGUCUUCUUUGCAGCAAUCCAU nck-1; CELE_ZK470.5; ZK470.5 cel-miR-268 50 70 UGGUUUGACGAAGAUUAAGAACGG- ||:||:| ||||||:| ---CAAUUGUUGUU--UUCUUGUCU nck-1; CELE_ZK470.5; ZK470.5 cel-miR-256 62 85 auguCAGAAGAUA---CGUAAGGU ||||||| | ||| |||| tcttGTCTTCTTTGCAGCAATCCA nck-1; CELE_ZK470.5; ZK470.5 cel-miR-268 47 68 ugguUUGACGAAGAUUAAGAACGG ||:||:| :| ||||||:| taacAATTGTTGTT--TTCTTGTC

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score nck-1 RAID00153574 cel-miR-43-3p miRNA MIMAT0000014 nck-1 mRNA 180690 Prediction 0.2202 nck-1 RAID00361995 cel-miR-797-5p miRNA MIMAT0004232 nck-1 mRNA 180690 Prediction 0.2381 nck-1 RAID00826178 cel-miR-251 miRNA MIMAT0000307 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID01516662 cel-miR-252-5p miRNA MIMAT0000308 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID01768394 cel-miR-254-3p miRNA MIMAT0000310 nck-1 mRNA 180690 Prediction 0.2202 nck-1 RAID01843102 cel-miR-792-3p miRNA MIMAT0004227 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID02286656 cel-miR-71-5p miRNA MIMAT0000043 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID02416609 cel-miR-234-3p miRNA MIMAT0000289 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID02821819 cel-miR-250-3p miRNA MIMAT0000306 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID02838929 cel-miR-87-3p miRNA MIMAT0000060 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID03141998 cel-miR-2-3p miRNA MIMAT0000004 nck-1 mRNA 180690 Prediction 0.2202 nck-1 RAID03240500 cel-miR-233-3p miRNA MIMAT0000288 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID03430467 cel-miR-249-3p miRNA MIMAT0000305 nck-1 mRNA 180690 Prediction 0.1828 nck-1 RAID03603338 cel-miR-228-5p miRNA MIMAT0000283 nck-1 mRNA 180690 Prediction 0.2202 nck-1 RAID03932251 cel-miR-235-3p miRNA MIMAT0000290 nck-1 mRNA 180690 Prediction 0.1828