DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015116 cel-miR-240* 177170 ubc-1 guaagaucagagUUUUAGGAGc ||||||||| caucauuugcaaAAAAUCCUCu 2 11 872 893 [ce6:IV:4106047-4106068:+] 0.5063 150 7 -14.40 -1.1452 MIMAT0015119 cel-miR-247* 177170 ubc-1 ccaUUAAUCUUUG--AAAAGAGAu || |:| | | |||||||| uucAAAUGGCACCUUUUUUCUCUc 2 20 977 1000 [ce6:IV:4106152-4106175:+] 0.5000 154 7 -9.36 -0.4628 MIMAT0015119 cel-miR-247* 177170 ubc-1 ccauuaaucUUUGAAAAGAGAu | |:|||||||| uuuccccccACAUUUUUCUCUc 2 14 126 147 [ce6:IV:4105301-4105322:+] 0.4552 153 7 -9.88 -0.7124 MIMAT0000316 cel-miR-261 177170 ubc-1 gcACUUUUGAUUUUUCGAu ||||| | ||||||| ucUGAAA--UCAAAAGCUu 2 18 44 60 [ce6:IV:4105219-4105235:+] 0.4447 154 7 -9.28 -0.4923 MIMAT0015239 cel-miR-786* 177170 ubc-1 caUUUAUGGGGUUGA--CUAUAAGc |||| ::: ||:| ||||||| ugAAAU-UUUGAAUUUCGAUAUUCc 2 22 610 633 [ce6:IV:4105785-4105808:+] 0.4716 154 7 -8.61 -0.5017 MIMAT0015241 cel-miR-797* 177170 ubc-1 uaAAG-UGUCUUUGGUUACUUuu ||| ||: ||| |||||| uuUUCGACGUAAA--AAUGAAua 3 21 1043 1063 [ce6:IV:4106218-4106238:+] 0.5000 136 0 -7.18 -0.1387 MIMAT0004235 cel-miR-800 177170 ubc-1 gccgUCUGUUAAAGG-CUCAAAc | | |||||:| |||||| uccaACAAAAUUUUCAGAGUUUu 2 19 631 653 [ce6:IV:4105806-4105828:+] 0.4716 134 6 -12.52 -0.9460 MIMAT0005031 cel-miR-1018 177170 ubc-1 gacauucaGGUUACUAGAGAGa |||:| ||||||| uauacaccCCAGUCAUCUCUCu 2 15 251 272 [ce6:IV:4105426-4105447:+] 0.5194 158 7 -18.77 -0.3913 MIMAT0005033 cel-miR-1020 177170 ubc-1 gacuuucacaguguCUUAUUa |||||| uucgacguaaaaauGAAUAAa 2 8 1045 1065 [ce6:IV:4106220-4106240:+] 0.5000 120 6 -3.27 -0.1553 MIMAT0006584 cel-miR-1817 177170 ubc-1 guacuaUCUCUUCUGUAACCGAu :| ||| | ||||||| uuucccGGUGAA-A-AUUGGCUg 2 18 327 347 [ce6:IV:4105502-4105522:+] 0.4716 145 7 -12.78 -0.4885 MIMAT0006587 cel-miR-1820 177170 ubc-1 cuUGUAGUAGCUUUUUGUUAGUUUu | |||||| :| ||||||| aaAAAUCAUCUGA----AAUCAAAa 2 24 36 56 [ce6:IV:4105211-4105231:+] 0.4447 154 7 -13.11 -0.7896 MIMAT0011434 cel-miR-2209c 177170 ubc-1 acaucacauuggccacCAGAAAa |||||| auuuccaaccauaauuGUCUUUu 2 8 949 971 [ce6:IV:4106124-4106146:+] 0.5063 120 6 -8.86 -0.1002 MIMAT0011442 cel-miR-2213 177170 ubc-1 aauccgucaggagaaUGUCGAa |||||| auuuuugacugaaaaACAGCUa 2 8 410 431 [ce6:IV:4105585-4105606:+] 0.4716 120 6 -11.06 -0.1344 MIMAT0011454 cel-miR-2209b 177170 ubc-1 acuucGUGU-UGGCGAGUAGAGa :||| || ||||||| auuuaUACACCCCAGUCAUCUCu 2 18 248 270 [ce6:IV:4105423-4105445:+] 0.5194 148 7 -18.16 -0.2456 MIMAT0011455 cel-miR-2218a 177170 ubc-1 acuccGAAUUUUG-AACAUCAAAc :||||:|: ||||||| aacacUUUAAGAUACGGUAGUUUu 2 19 213 236 [ce6:IV:4105388-4105411:+] 0.4926 153 7 -11.04 -0.6797 MIMAT0000006 cel-miR-35 177170 ubc-1 ugACGAUCAAAGGUGGGCCACu || : |||:: ||||||| gaUGAGGAUUUUUUCCCGGUGa 2 21 316 337 [ce6:IV:4105491-4105512:+] 0.4955 156 7 -20.62 -1.1537 MIMAT0000007 cel-miR-36 177170 ubc-1 guACGCUUAAAAGUGGGCCACu || |:|||||: ||||||| gaUGAGGAUUUUUUCCCGGUGa 2 21 316 337 [ce6:IV:4105491-4105512:+] 0.4955 176 7 -27.90 -1.1517 MIMAT0000008 cel-miR-37 177170 ubc-1 ugACGUUCACAAGUGGGCCACu || :: | ||: ||||||| gaUGAGGAUUUUUUCCCGGUGa 2 21 316 337 [ce6:IV:4105491-4105512:+] 0.4955 156 7 -19.28 -1.1576 MIMAT0000009 cel-miR-38 177170 ubc-1 ugaggUCAAAAAGAGGGCCACu :| ||||:|||||||| gaugaGGAUUUUUUCCCGGUGa 2 18 316 337 [ce6:IV:4105491-4105512:+] 0.4955 169 7 -25.45 -1.1517 MIMAT0000010 cel-miR-39 177170 ubc-1 guucgaCUAAAUGUGGGCCACu ||||| : ||||||| gaugagGAUUUUUUCCCGGUGa 2 17 316 337 [ce6:IV:4105491-4105512:+] 0.4955 160 7 -23.87 -1.1497 MIMAT0000011 cel-miR-40 177170 ubc-1 aaucgaCUACAUGUGGGCCACu ||| | : ||||||| gaugagGAUUUUUUCCCGGUGa 2 17 316 337 [ce6:IV:4105491-4105512:+] 0.4955 152 7 -20.62 -1.1537 MIMAT0000012 cel-miR-41 177170 ubc-1 auccaCUAAAAAGUGGGCCACu |||||||: ||||||| augagGAUUUUUU-CCCGGUGa 2 18 317 337 [ce6:IV:4105492-4105512:+] 0.4955 167 7 -25.34 -1.1317 MIMAT0000013 cel-miR-42 177170 ubc-1 agACAUCUACAAUUGGGCCACu || :||| || ||||||| gaUGAGGAUUUUUUCCCGGUGa 2 21 316 337 [ce6:IV:4105491-4105512:+] 0.4955 164 7 -23.51 -1.1537 MIMAT0000015 cel-miR-44 177170 ubc-1 ucgacuuACACAGAGAU-CAGu | |||||||| ||| uuuucucUCUGUCUCUAUGUCu 2 15 992 1013 [ce6:IV:4106167-4106188:+] 0.5000 126 0 -14.42 -0.3413 MIMAT0000016 cel-miR-45 177170 ubc-1 ucgacuuACACAGAGAU-CAGu | |||||||| ||| uuuucucUCUGUCUCUAUGUCu 2 15 992 1013 [ce6:IV:4106167-4106188:+] 0.5000 126 0 -14.42 -0.3413 MIMAT0000059 cel-miR-86 177170 ubc-1 cugacaccGUUUCGUAAGUGAAu |:|| : ||||||| uggaaauuCGAAUUUUUCACUUu 2 16 836 858 [ce6:IV:4106011-4106033:+] 0.5063 151 7 -10.13 -0.9527 MIMAT0000301 cel-miR-245 177170 ubc-1 cucgaugaaccucccCUGGUUa |||||| aaaucugaaaauuucGACCAAa 2 8 505 526 [ce6:IV:4105680-4105701:+] 0.4716 120 6 -8.73 -0.1281 MIMAT0000310 cel-miR-254 177170 ubc-1 ggaugucagcgcuuucUAAACGu |||||| ucccccaauuuucaucAUUUGCa 2 8 860 882 [ce6:IV:4106035-4106057:+] 0.5063 120 6 -7.74 -0.1806 MIMAT0000699 cel-miR-357 177170 ubc-1 ugaggacgUUGCU-GACCGUAAAu ||: | :|||||||| uucgaaaaAAUCAUUUGGCAUUUu 2 16 548 571 [ce6:IV:4105723-4105746:+] 0.4716 150 7 -12.42 -1.0652 MIMAT0004220 cel-miR-785 177170 ubc-1 agauguguUUUGUUAAGUGAAu :||: ||||||| ggaaauucGAAUUUUUCACUUu 2 15 837 858 [ce6:IV:4106012-4106033:+] 0.5063 146 7 -9.70 -0.9495 MIMAT0004227 cel-miR-792 177170 ubc-1 agacuuucAACUUCUCUAAAGuu ||| | |||||| ggauuuuaUUG-AUUGAUUUCca 3 16 934 955 [ce6:IV:4106109-4106130:+] 0.5063 125 0 -7.57 -0.1066

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ubc-1 RAID00323067 cel-miR-35-3p miRNA MIMAT0000006 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID01030782 cel-miR-42-3p miRNA MIMAT0000013 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID01828422 cel-miR-254-3p miRNA MIMAT0000310 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID01841504 cel-miR-86-5p miRNA MIMAT0000059 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID01856443 cel-miR-38-3p miRNA MIMAT0000009 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID01893693 cel-miR-41-3p miRNA MIMAT0000012 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID01920427 cel-miR-792-3p miRNA MIMAT0004227 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID02595088 cel-miR-45-3p miRNA MIMAT0000016 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID02704777 cel-miR-37-3p miRNA MIMAT0000008 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID02750429 cel-miR-40-3p miRNA MIMAT0000011 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID02797407 cel-miR-245-3p miRNA MIMAT0000301 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID02959225 cel-miR-357-3p miRNA MIMAT0000699 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID03363750 cel-miR-39-3p miRNA MIMAT0000010 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID03426719 cel-miR-44-3p miRNA MIMAT0000015 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID03554882 cel-miR-785-3p miRNA MIMAT0004220 ubc-1 mRNA 177170 Prediction 0.1828 ubc-1 RAID03555285 cel-miR-36-3p miRNA MIMAT0000007 ubc-1 mRNA 177170 Prediction 0.1828