DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015107 cel-miR-71* 3565767 ubc-9 cgCUUU-UUGU--CUUAUCACUau |||| | :| | :|||||| gcGAAAUAUUAGUGUGUAGUGAaa 3 20 624 647 [ce6:IV:4652534-4652557:+] 0.5889 129 0 -17.06 -0.1105 MIMAT0015116 cel-miR-240* 3565767 ubc-9 guaagaucagaguuuUAGGAGc |||||| cuccuuuuuccucccAUCCUCa 2 8 33 54 [ce6:IV:4651943-4651964:+] 0.5889 120 6 -10.72 -0.1436 MIMAT0015118 cel-miR-244* 3565767 ubc-9 aggaaaucgacuuUUCGUCAu ||||||| guguccaccguguAAGCAGUu 2 9 699 719 [ce6:IV:4652609-4652629:+] 0.7979 140 7 -11.48 -0.7810 MIMAT0015119 cel-miR-247* 3565767 ubc-9 ccauuaaucuuuGAAAAGAGAu ||||||||| uguuuuccaucuCUUUUCUCUu 2 11 364 385 [ce6:IV:4652274-4652295:+] 0.5889 150 7 -11.74 -0.7348 MIMAT0000316 cel-miR-261 3565767 ubc-9 gcacuUUUGAU---UUUUCGAu || ||| ||||||| auuucAAUCUAACCAAAAGCUu 2 15 144 165 [ce6:IV:4652054-4652075:+] 0.5889 145 7 -6.92 -0.6188 MIMAT0000321 cel-miR-265 3565767 ubc-9 uaugGUGGGAAGGAGGGAGu :|:::||::|||||| auuaUAUUUUUUUUCCCUCa 2 17 465 484 [ce6:IV:4652375-4652394:+] 0.5889 144 6 -22.30 -0.4691 MIMAT0015239 cel-miR-786* 3565767 ubc-9 cauUUAUGGGGUUGACU-AUAAGc | | :::||| || ||||| uuuAUUCUUUCAAAAGACUAUUCc 2 21 292 315 [ce6:IV:4652202-4652225:+] 0.5889 120 0 -6.77 -0.7037 MIMAT0015240 cel-miR-788* 3565767 ubc-9 gcuaAGAUUA--GGUAAAGg || || :|||||| uuccUCCCAUCCUCAUUUCa 2 15 40 59 [ce6:IV:4651950-4651969:+] 0.5889 125 6 -7.19 -0.1148 MIMAT0005523 cel-miR-1022 3565767 ubc-9 cuaccGCAGGAUUGUUACUAGAa | | || |: |||||| ucauuCUUACUCAUUUUGAUCUu 2 19 319 341 [ce6:IV:4652229-4652251:+] 0.5889 122 6 -10.91 -0.1011 MIMAT0006776 cel-miR-1834 3565767 ubc-9 aaccuaGAGUUACCAACUAGAGa |||| | |||||||: uucuuaCUCAUU--UUGAUCUUc 2 18 322 342 [ce6:IV:4652232-4652252:+] 0.5889 138 0 -12.93 -0.1357 MIMAT0011432 cel-miR-2209a 3565767 ubc-9 acaucacauuggcGACUAGAGa :||||||: auucuuacucauuUUGAUCUUc 2 10 321 342 [ce6:IV:4652231-4652252:+] 0.5889 125 0 -7.63 -0.1412 MIMAT0011453 cel-miR-2209b* 3565767 ubc-9 cuucCUCUUCUCAACAA-UGUGa |: || : ||||| |||| augcGGCAACGAUUGUUGACACa 2 19 79 101 [ce6:IV:4651989-4652011:+] 0.5889 122 0 -8.39 -0.7658 MIMAT0011454 cel-miR-2209b 3565767 ubc-9 acuucguguuggcgaGUAGAGa |||||| ucccguucuguuuucCAUCUCu 2 8 356 377 [ce6:IV:4652266-4652287:+] 0.5889 120 6 -14.22 -0.1467 MIMAT0011457 cel-miR-2218b 3565767 ubc-9 cuUUUACUACAUCAAACAUCAga |||| || |||| |||||| cgAAAU-AU-UAGUGUGUAGUga 3 22 625 645 [ce6:IV:4652535-4652555:+] 0.5889 149 0 -9.76 -0.1180 MIMAT0000039 cel-miR-67 3565767 ubc-9 agAUGAGAAAG--AUCCUCCAAC-ACu |: |:|||| | | ||||| || ccUGGUUUUUCAUUUCGUGGUUGAUGa 2 23 173 199 [ce6:IV:4652083-4652109:+] 0.5889 121 0 -17.14 -0.8221 MIMAT0000043 cel-miR-71 3565767 ubc-9 agugauggguacAGAAAGu |||||| aguagucuuuauUCUUUCa 2 8 285 303 [ce6:IV:4652195-4652213:+] 0.5889 120 6 -9.93 -0.1289 MIMAT0000043 cel-miR-71 3565767 ubc-9 agugauggguacAGAAAGu |||||| uuuugaucuucaUCUUUCu 2 8 332 350 [ce6:IV:4652242-4652260:+] 0.5889 120 6 -7.96 -0.1128 MIMAT0000047 cel-miR-75 3565767 ubc-9 acuucggCCAAC-CAUC-GAAAUu || || |||| ||||| guccaugGGCUGAGUAGUCUUUAu 2 16 273 296 [ce6:IV:4652183-4652206:+] 0.5889 122 0 -12.73 -0.7200 MIMAT0000053 cel-miR-80 3565767 ubc-9 agccGAAAGUUGAUUACUAGAGu ||| | | ||||||: cauuCUUACUCAUUUUGAUCUUc 2 20 320 342 [ce6:IV:4652230-4652252:+] 0.5889 131 0 -9.45 -0.1384 MIMAT0000054 cel-miR-81 3565767 ubc-9 ugaucGAA--AGUGCUACUAGAGu ||| |||: ||||||: ucauuCUUACUCAUUUUGAUCUUc 2 18 319 342 [ce6:IV:4652229-4652252:+] 0.5889 136 0 -12.25 -0.1398 MIMAT0000055 cel-miR-82 3565767 ubc-9 ugaccGAA--AGUGCUACUAGAGu ||| |||: ||||||: ucauuCUUACUCAUUUUGAUCUUc 2 18 319 342 [ce6:IV:4652229-4652252:+] 0.5889 136 0 -12.25 -0.1398 MIMAT0000304 cel-miR-248 3565767 ubc-9 acuCGCAAUA-GGCACGU-GCACAUa ||| || :|| || |||||| uccGCGGGAUGGUGUCCACCGUGUAa 2 22 688 713 [ce6:IV:4652598-4652623:+] 0.7979 124 6 -17.14 -0.5854 MIMAT0004227 cel-miR-792 3565767 ubc-9 agacuuucaacuucucUAAAGUu |||||| uuuucugauaucuuuuAUUUCAa 2 8 128 150 [ce6:IV:4652038-4652060:+] 0.5889 120 6 -8.43 -0.1765

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ubc-9 RAID00345741 cel-miR-82-3p miRNA MIMAT0000055 ubc-9 mRNA 3565767 CLIP-seq//Prediction 0.6308 ubc-9 RAID00787355 cel-miR-792-3p miRNA MIMAT0004227 ubc-9 mRNA 3565767 Prediction 0.1828 ubc-9 RAID01257157 cel-miR-71-5p miRNA MIMAT0000043 ubc-9 mRNA 3565767 CLIP-seq//Prediction 0.6308 ubc-9 RAID01847223 cel-miR-248 miRNA MIMAT0000304 ubc-9 mRNA 3565767 Prediction 0.1828 ubc-9 RAID01960726 cel-miR-75-3p miRNA MIMAT0000047 ubc-9 mRNA 3565767 CLIP-seq//Prediction 0.6308 ubc-9 RAID02112169 cel-miR-67-3p miRNA MIMAT0000039 ubc-9 mRNA 3565767 Prediction 0.1828 ubc-9 RAID02143967 cel-miR-81-3p miRNA MIMAT0000054 ubc-9 mRNA 3565767 CLIP-seq//Prediction 0.6308 ubc-9 RAID02361732 cel-miR-77-3p miRNA MIMAT0000049 ubc-9 mRNA 3565767 Prediction 0.1828 ubc-9 RAID03994616 cel-miR-80-3p miRNA MIMAT0000053 ubc-9 mRNA 3565767 CLIP-seq//Prediction 0.6308