DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015117 cel-miR-243* 172896 wts-1 caugcuagcguGGCUCUAu :|||||| guuuucagaauUCGAGAUa 2 9 144 162 [ce6:I:10291967-10291985:-] 0.5685 124 6 -12.28 -0.3023 MIMAT0015119 cel-miR-247* 172896 wts-1 ccauuaaucuuuGAAAAGAGAu ||||||||| aauaucucuuuuCUUUUCUCUu 2 11 168 189 [ce6:I:10291940-10291961:-] 0.5685 150 7 -11.74 -1.2410 MIMAT0015119 cel-miR-247* 172896 wts-1 ccauuaaucuuuGAAAAGAGAu :|||||||| uuuucuuuucucUUUUUCUCUc 2 11 176 197 [ce6:I:10291932-10291953:-] 0.5400 146 7 -11.08 -1.0683 MIMAT0000698 cel-miR-356 172896 wts-1 acuaaACAAGCGCAACGAGUu | ||: : ||||||| guucgUUUUUUUUUUGCUCAa 2 17 216 236 [ce6:I:10291893-10291913:-] 0.5114 148 7 -14.33 -1.2274 MIMAT0005031 cel-miR-1018 172896 wts-1 gacAUUCAGGUUACUAGAGAGa || |::||| ||||||: agaUAUUUUUAAU-AUCUCUUu 2 20 158 178 [ce6:I:10291951-10291971:-] 0.5685 141 0 -11.11 -0.1266 MIMAT0005031 cel-miR-1018 172896 wts-1 gacauucagguuacuAGAGAGa |||||| uuucuuuucucuuuuUCUCUCa 2 8 177 198 [ce6:I:10291931-10291952:-] 0.5400 120 6 -7.94 -0.2276 MIMAT0005822 cel-miR-1019* 172896 wts-1 uuuuacuuugagcuuguuACGAGUg |||||| uuucguucguuuuuuuuuUGCUCAa 2 8 212 236 [ce6:I:10291893-10291917:-] 0.5114 120 6 -12.94 -0.1949 MIMAT0005032 cel-miR-1019 172896 wts-1 gaccuuucguuacaccUUAAUGuc |||||| uaucuuuaauuuuccaAAUUACcc 3 9 89 112 [ce6:I:10292017-10292040:-] 0.5685 120 0 -2.09 -0.1298 MIMAT0005523 cel-miR-1022 172896 wts-1 cuaccgcAGGAUUGUUACUAGAa |:|| :::||||||| uuacuaaUUCU-GUGAUGAUCUc 2 17 116 137 [ce6:I:10291992-10292013:-] 0.5685 150 7 -11.86 -0.4628 MIMAT0006776 cel-miR-1834 172896 wts-1 aaccUAGAGUUACCAACUAGAGa | :|| :| | ||||||| uacuAAUUCUGU-GAUGAUCUCg 2 20 117 138 [ce6:I:10291991-10292012:-] 0.5685 149 7 -12.71 -0.8420 MIMAT0011432 cel-miR-2209a 172896 wts-1 acaucacauugGCGACUAGAGa :| ||||||| uacuaauucugUGAUGAUCUCg 2 12 117 138 [ce6:I:10291991-10292012:-] 0.5685 143 7 -12.33 -0.8490 MIMAT0011447 cel-miR-2216 172896 wts-1 cggAUG-GCUGAAUUUUACACg ||: :||:|| |||||| uuaUAUAUGAUUU-UAAUGUGa 2 19 29 49 [ce6:I:10292080-10292100:-] 0.5685 123 6 -12.60 -0.3352 MIMAT0011458 cel-miR-2218b* 172896 wts-1 agAGUGAUGUUUGAUGUUUAAa || :|| | :| |||||| uaUCUUUA-AUUUUCCAAAUUa 2 21 89 109 [ce6:I:10292020-10292040:-] 0.5685 122 6 -5.47 -0.2323 MIMAT0000004 cel-miR-2 172896 wts-1 cguguaguuucgaccGACACUAu ||||||| cccucuuuacuaauuCUGUGAUg 2 9 110 132 [ce6:I:10291997-10292019:-] 0.5685 140 7 -11.33 -1.0848 MIMAT0000004 cel-miR-2 172896 wts-1 cgUGUAGUUUCGACCGACACUAu |:|| :| :| |||||| uuAUAUAUGAUUUUAAUGUGAUg 2 22 29 51 [ce6:I:10292078-10292100:-] 0.5685 121 6 -10.64 -0.2507 MIMAT0000014 cel-miR-43 172896 wts-1 cgcugucguUCAUU-UGACACUAu | ||| ||||||| acccucuuuACUAAUUCUGUGAUg 2 15 109 132 [ce6:I:10291997-10292020:-] 0.5685 145 7 -11.06 -1.0848 MIMAT0000014 cel-miR-43 172896 wts-1 cgcugucguucauuugACACUAu |||||| uuauauaugauuuuaaUGUGAUg 2 8 29 51 [ce6:I:10292078-10292100:-] 0.5685 120 6 -9.63 -0.2484 MIMAT0000053 cel-miR-80 172896 wts-1 agccgaAAGUUGAUUACUAGAGu ||| : |:|||||||| uacuaaUUCUG-UGAUGAUCUCg 2 18 117 138 [ce6:I:10291991-10292012:-] 0.5685 155 7 -16.84 -0.8420 MIMAT0000054 cel-miR-81 172896 wts-1 ugaucgAAAGUGCUACUAGAGu || :::||||||||| uacuaaUUCUGUGAUGAUCUCg 2 17 117 138 [ce6:I:10291991-10292012:-] 0.5685 160 7 -21.96 -0.8385 MIMAT0000055 cel-miR-82 172896 wts-1 ugaccgAAAGUGCUACUAGAGu || :::||||||||| uacuaaUUCUGUGAUGAUCUCg 2 17 117 138 [ce6:I:10291991-10292012:-] 0.5685 160 7 -20.93 -0.8385 MIMAT0000057 cel-miR-84 172896 wts-1 auGUUAUAAUGUAUGAU-GGAGu :||| || || |:|| |||| uuUAAUUUUCCAAAUUACCCUCu 2 21 93 115 [ce6:I:10292014-10292036:-] 0.5685 120 0 -9.38 -0.2762 MIMAT0000060 cel-miR-87 172896 wts-1 cguguggacuuuGAAACGAGUg :|||||||| cguucguuuuuuUUUUGCUCAa 2 11 215 236 [ce6:I:10291893-10291914:-] 0.5114 146 7 -14.84 -1.2328 MIMAT0000288 cel-miR-233 172896 wts-1 ggcGUGUACGCGUAACGAGUu |:: | : : ||||||| guuCGUUUUUUUUUUGCUCAa 2 19 216 236 [ce6:I:10291893-10291913:-] 0.5114 142 7 -13.89 -1.2315 MIMAT0000306 cel-miR-250 172896 wts-1 acGGUUGUCAACUGACACUAa ::| :| || ||||||| cuUUACUAAUU--CUGUGAUg 2 20 114 132 [ce6:I:10291997-10292015:-] 0.5685 144 7 -11.48 -1.0679 MIMAT0000306 cel-miR-250 172896 wts-1 acgguugUCAACUGACACUAa | || | |||||| auauaugAUUUUAAUGUGAUg 2 15 31 51 [ce6:I:10292078-10292098:-] 0.5685 122 6 -6.99 -0.2462 MIMAT0004227 cel-miR-792 172896 wts-1 agACU--UUCAACUUCU-CUAAAGUu ||| | || | | |||||:| auUGAUUAUAUUAUAUAUGAUUUUAa 2 22 19 44 [ce6:I:10292085-10292110:-] 0.5685 127 0 -7.05 -0.1215 MIMAT0004232 cel-miR-797 172896 wts-1 agaaGAGUAA-CACUAACGACACUAu ||| || | ||| ||||||| uaccCUCUUUACUAAUU-CUGUGAUg 2 22 108 132 [ce6:I:10291997-10292021:-] 0.5685 158 7 -13.84 -1.0679 MIMAT0004232 cel-miR-797 172896 wts-1 agaAGAGUA-ACACU--AACGACACUAu | |:|| | ||| || |||||| uuaUAUUAUAUAUGAUUUUAAUGUGAUg 2 23 24 51 [ce6:I:10292078-10292105:-] 0.5685 128 6 -12.28 -0.2440

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 wts-1; T20F10.1 cel-miR-233 200 238 -GGCGU---------GUACGCGU------AACGAGUU- :||| |:| ||: |||||||| GUCGCCACACUAUUUCGUUCGUUUUUUUUUUGCUCAAA wts-1; T20F10.1 cel-miR-241 195 218 -AGUAAAGAGCG-UG-GAUGGAGU- |||| |||| || |||::||: CUCAUG--UCGCCACACUAUUUCGU wts-1; T20F10.1 cel-miR-250 118 133 ACGGUUGUCAACUGACACUAA |:||: ||||||| -ACUAAUU-----CUGUGAUG wts-1; T20F10.1 cel-miR-265 168 200 -UAUGGU----------GGGAAGGAGGGAGU- |||:| |:|||::||:|||| AAUAUCUCUUUUCUUUUCUCUUUUUCUCUCAU wts-1; T20F10.1 cel-miR-356 215 238 ACUAAACAAGCGC------AACGAGUU- |||||: |||||||| -----CGUUCGUUUUUUUUUUGCUCAAA wts-1; T20F10.1 cel-miR-43 121 134 CGCUGUCGUUCAUUUGACACUAU- | |||||||: -----------AAUUCUGUGAUGA wts-1; T20F10.1 cel-miR-58 121 140 -UAACGGCAUGACUUGCUAGAGU- ||| |:|| :|:||||||: AAUU-CUGU----GAUGAUCUCGA wts-1; T20F10.1 cel-miR-59 121 141 GUAGUAGGACUAUUUGCUA-AGCU- ||:||| :|:||| |||| ---AAUUCUGU--GAUGAUCUCGAU wts-1; T20F10.1 cel-miR-64 45 65 AAGCCAUUGCGAAGUCACAGUAU ||:|:|:||:||| |||| ---UGUGAUGUUUUAGUAUCAUU wts-1; T20F10.1 cel-miR-65 45 65 AAGCCAAUGCGAAGUCACAGUAU || |:|:||:||| |||| ---UGUGAUGUUUUAGUAUCAUU wts-1; T20F10.1 cel-miR-81 117 140 -UGAUCGAAAGUG-CUACUAGAGU- |||| ||| |||||||||: UACUAA--UUCUGUGAUGAUCUCGA wts-1; T20F10.1 cel-miR-82 122 140 UGACCGAAAGUG-CUACUAGAGU- ||| |||||||||: ------AUUCUGUGAUGAUCUCGA wts-1; T20F10.1 cel-miR-87 204 237 CGUGUGG-----------ACUUUGAAACGAGUG |||||: | :|||||||| CCACACUAUUUCGUUCGUUUUUUUUUUGCUCAA wts-1; T20F10.1 cel-miR-241 196 216 AGUAAAGAGCGUG-GAUGGAGu |||| || | ||| |||::|| TCATGTCGC-CACACTATTTCg wts-1; T20F10.1 cel-miR-262 147 163 uAGUCUUUUGUAGCUCUUUg |||||| |||||| | tTCAGAA---TTCGAGATAt wts-1; T20F10.1 cel-miR-265 179 198 uaugguGGGAAGGAGGGAGU |:|||::||:|||| tcttttCTCTTTTTCTCTCA wts-1; T20F10.1 cel-miR-356 209 236 acUAAA-CAAGC------GCAACGAGUU |||| ||||| : |||||||| ctATTTCGTTCGTTTTTTTTTTGCTCAA wts-1; T20F10.1 cel-miR-58 116 138 uaacggcAUGAC-UUGCUAGAGu | ||| :|:|||||| ttactaaTTCTGTGATGATCTCg wts-1; T20F10.1 cel-miR-59 118 144 guAGUAGG--ACUAUU--UGCUAAGCu | ||:| ||||:| |||| || acTAATTCTGTGATGATCTCGATACGg wts-1; T20F10.1 cel-miR-64 42 64 aagcCAUUGCGAAGUCACAGUAu ||:|:|:||:||| |||| taatGTGATGTTTTAGTATCATt wts-1; T20F10.1 cel-miR-65 42 64 aagcCAAUGCGAAGUCACAGUAu || |:|:||:||| |||| taatGTGATGTTTTAGTATCATt wts-1; T20F10.1 cel-miR-80 117 138 agccgaAAGUUGAUUACUAGAGu ||| : |:|||||||| tactaaTTCTG-TGATGATCTCg wts-1; T20F10.1 cel-miR-81 118 138 UGAUCGAAAGUGCUACUAGAGu |||| || :::||||||||| ACTA-ATTCTGTGATGATCTCg wts-1; T20F10.1 cel-miR-82 116 138 ugaccgaAAG-UGCUACUAGAGu ||| ::||||||||| ttactaaTTCTGTGATGATCTCg wts-1; T20F10.1 cel-miR-87 215 236 cguguggacuuugAAACGAGUg |||||||| cgttcgtttttttTTTGCTCAa wts-1; T20F10.1 cel-miR-233 229 236 ----------GGCGUGUAC--GCGU----------AACGAGUU || ||| ||: |||||||| UCUCAUGUCGCCACACUAUUUCGUUCGUUUUUUUUUUGCUCAAA wts-1; T20F10.1 cel-miR-250 125 132 AC---------------------------GGUUGUCAACUGACACUAA |:||: ||||||| AUCUUUAAUUUUCCAAAUUACCCUCUUUACUAAUU-----CUGUGAUG wts-1; T20F10.1 cel-miR-356 229 236 AC---------------UAAA-CAAGCGC------AACGAGUU |||| |||||: |||||||| UCUCAUGUCGCCACACUAUUUCGUUCGUUUUUUUUUUGCUCAAA wts-1; T20F10.1 cel-miR-43 125 132 CGCUGUCGUUCAUUU--------------------GACACUAU |||||||: AUCUUUAAUUUUCCAAAUUACCCUCUUUACUAAUUCUGUGAUGA wts-1; T20F10.1 cel-miR-80 131 138 AGCCGA---------------------AAGUUGAUUACUAGAGU ||| |:||||||||: AAUUUUCCAAAUUACCCUCUUUACUAAUUCUG-UGAUGAUCUCGA wts-1; T20F10.1 cel-miR-81 131 138 ----------------------UGAUCGAAAGUGCUACUAGAGU |||| || ::|||||||||: AAUUUUCCAAAUUACCCUCUUUACUAA-UUCUGUGAUGAUCUCGA wts-1; T20F10.1 cel-miR-82 131 138 ----------------------UGACCGAAAGUGCUACUAGAGU ||| || ::|||||||||: AAUUUUCCAAAUUACCCUCUUUACUAA-UUCUGUGAUGAUCUCGA wts-1; T20F10.1 cel-miR-87 229 236 C----------GUGUGGACUUU-----------GAAACGAGUG |||||: :|||||||| UCUCAUGUCGCCACACUAUUUCGUUCGUUUUUUUUUUGCUCAA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score wts-1 RAID00033820 cel-miR-2-3p miRNA MIMAT0000004 wts-1 mRNA 172896 Prediction 0.2202 wts-1 RAID00183188 cel-miR-233-3p miRNA MIMAT0000288 wts-1 mRNA 172896 Prediction 0.2202 wts-1 RAID00363082 cel-miR-84-5p miRNA MIMAT0000057 wts-1 mRNA 172896 Prediction 0.1828 wts-1 RAID01114102 cel-miR-43-3p miRNA MIMAT0000014 wts-1 mRNA 172896 Prediction 0.2202 wts-1 RAID01339880 cel-miR-797-5p miRNA MIMAT0004232 wts-1 mRNA 172896 Prediction 0.2381 wts-1 RAID01644941 cel-miR-82-3p miRNA MIMAT0000055 wts-1 mRNA 172896 Prediction 0.2381 wts-1 RAID01753783 cel-miR-356a miRNA MIMAT0000698 wts-1 mRNA 172896 Prediction 0.1828 wts-1 RAID02487124 cel-miR-81-3p miRNA MIMAT0000054 wts-1 mRNA 172896 Prediction 0.2202 wts-1 RAID02836821 cel-miR-792-3p miRNA MIMAT0004227 wts-1 mRNA 172896 Prediction 0.1828 wts-1 RAID03344770 cel-miR-80-3p miRNA MIMAT0000053 wts-1 mRNA 172896 Prediction 0.2202 wts-1 RAID03781496 cel-miR-250-3p miRNA MIMAT0000306 wts-1 mRNA 172896 Prediction 0.2202 wts-1 RAID03814653 cel-miR-87-3p miRNA MIMAT0000060 wts-1 mRNA 172896 Prediction 0.2202