DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0015094 cel-miR-37* 174624 cdc-48.1 cguggcguugccUGUGGGUGu |:|||||| uuauuuucucccAUACCCACu 2 10 42 62 [ce6:II:10560192-10560212:-] 0.5722 129 6 -14.19 -0.1212 MIMAT0015094 cel-miR-37* 174624 cdc-48.1 cguggcguugccUGUGGGUGu |:|||||| uuauuuucucccAUACCCACu 2 10 42 62 [ce6:II:10560192-10560212:-] 0.5722 129 6 -14.19 -0.1197 MIMAT0015119 cel-miR-247* 174624 cdc-48.1 ccauuaaucuuugAAAAGAGau ||||||| gauacucguuuuaUUUUCUCcc 3 10 32 53 [ce6:II:10560201-10560222:-] 0.5722 125 0 -6.16 -0.1221 MIMAT0015119 cel-miR-247* 174624 cdc-48.1 ccauuaaucuuugAAAAGAGau ||||||| gauacucguuuuaUUUUCUCcc 3 10 32 53 [ce6:II:10560201-10560222:-] 0.5722 125 0 -6.16 -0.1207 MIMAT0000312 cel-miR-257 174624 cdc-48.1 agUGACCC--AUGAGGACUAUGAg |||| | ||: : ||||||| cuACUGAGUCUAUGUAUGAUACUc 2 21 15 38 [ce6:II:10560216-10560239:-] 0.5722 155 7 -19.72 -1.0318 MIMAT0000312 cel-miR-257 174624 cdc-48.1 agUGACCC--AUGAGGACUAUGAg |||| | ||: : ||||||| cuACUGAGUCUAUGUAUGAUACUc 2 21 15 38 [ce6:II:10560216-10560239:-] 0.5722 155 7 -19.72 -1.0285 MIMAT0000313 cel-miR-258 174624 cdc-48.1 uuuuccuaaggagAGUUUUgg |||||| acaucccaguugaUCAAAAag 3 9 194 214 [ce6:II:10560040-10560060:-] 0.5722 120 0 -5.17 -0.1040 MIMAT0000313 cel-miR-258 174624 cdc-48.1 uuuuccuaaggagAGUUUUgg |||||| acaucccaguugaUCAAAAag 3 9 194 214 [ce6:II:10560040-10560060:-] 0.5722 120 0 -5.17 -0.1026 MIMAT0015240 cel-miR-788* 174624 cdc-48.1 gcUAAGAUUAGGUAAAgg | | || |||||| aaAGUAUAUCCCAUUUau 3 17 211 228 [ce6:II:10560026-10560043:-] 0.5722 128 0 -5.22 -0.1002 MIMAT0004235 cel-miR-800 174624 cdc-48.1 gccgucuguuaAAGGCUCAAAc | ::|||||| ---------ugUAUUGAGUUUa 2 12 1 13 [ce6:II:10560241-10560253:-] 0.5722 127 6 -7.25 -0.1344 MIMAT0005523 cel-miR-1022 174624 cdc-48.1 cuaccgcagGAUUGUUACUAGAa :|| :||||||| aauuaauggUUACGGAUGAUCUu 2 15 143 165 [ce6:II:10560089-10560111:-] 0.5722 146 7 -14.15 -0.1206 MIMAT0005523 cel-miR-1022 174624 cdc-48.1 cuaccgcagGAUUGUUACUAGAa :|| :||||||| aauuaauggUUACGGAUGAUCUu 2 15 143 165 [ce6:II:10560089-10560111:-] 0.5722 146 7 -14.15 -0.1190 MIMAT0006587 cel-miR-1820 174624 cdc-48.1 cuUGUA-GUAGCUUUUUGUUAGUUUu || | |||| |: ::|||||| auACCUACAUC-CCAGUUGAUCAAAa 2 24 188 212 [ce6:II:10560042-10560066:-] 0.5722 136 6 -10.83 -0.1550 MIMAT0006587 cel-miR-1820 174624 cdc-48.1 cuUGUA-GUAGCUUUUUGUUAGUUUu || | |||| |: ::|||||| auACCUACAUC-CCAGUUGAUCAAAa 2 24 188 212 [ce6:II:10560042-10560066:-] 0.5722 136 6 -10.83 -0.1530 MIMAT0006769 cel-miR-1829a 174624 cdc-48.1 uuaucUCUUUAAGGUUACCAAc ||||||| ||||||| gcuuuAGAAAUU--AAUGGUUa 2 18 135 154 [ce6:II:10560100-10560119:-] 0.5722 162 7 -11.96 -0.9643 MIMAT0006769 cel-miR-1829a 174624 cdc-48.1 uuaucUCUUUAAGGUUACCAAc ||||||| ||||||| gcuuuAGAAAUU--AAUGGUUa 2 18 135 154 [ce6:II:10560100-10560119:-] 0.5722 162 7 -11.96 -0.9604 MIMAT0006771 cel-miR-1829c 174624 cdc-48.1 augUUGGUAGAACUUAAAGCGAa |:|| | || ||||||| uugAGCC--CAUG-UUUUCGCUu 2 21 119 138 [ce6:II:10560116-10560135:-] 0.5722 143 7 -13.26 -1.1169 MIMAT0006771 cel-miR-1829c 174624 cdc-48.1 augUUGGUAGAACUUAAAGCGAa |:|| | || ||||||| uugAGCC--CAUG-UUUUCGCUu 2 21 119 138 [ce6:II:10560116-10560135:-] 0.5722 143 7 -13.26 -1.1142 MIMAT0006776 cel-miR-1834 174624 cdc-48.1 aaccuagAGUUACCAACUA-GAGa || ||| |||| ||| uacugagUCUAUGUAUGAUACUCg 2 17 16 39 [ce6:II:10560215-10560238:-] 0.5722 120 0 -9.67 -1.2377 MIMAT0006776 cel-miR-1834 174624 cdc-48.1 aaccuagAGUUACCAACUA-GAGa || ||| |||| ||| uacugagUCUAUGUAUGAUACUCg 2 17 16 39 [ce6:II:10560215-10560238:-] 0.5722 120 0 -9.67 -1.2361 MIMAT0011448 cel-miR-2216* 174624 cdc-48.1 uccgUGUAAAAUUCAUCUAUc | | ||| ||||||| agaaAAAAUUU--GUAGAUAc 2 18 173 191 [ce6:II:10560063-10560081:-] 0.5722 146 7 -5.92 -0.6989 MIMAT0011448 cel-miR-2216* 174624 cdc-48.1 uccgUGUAAAAUUCAUCUAUc | | ||| ||||||| agaaAAAAUUU--GUAGAUAc 2 18 173 191 [ce6:II:10560063-10560081:-] 0.5722 146 7 -5.92 -0.6939 MIMAT0011449 cel-miR-1832b* 174624 cdc-48.1 uuUCACCCGGCUCGCUAAGCGAc | || ||| | |||||| uaAUUGAGCCCAUGUUUUCGCUu 2 22 116 138 [ce6:II:10560116-10560138:-] 0.5722 125 6 -13.08 -0.1061 MIMAT0011449 cel-miR-1832b* 174624 cdc-48.1 uuUCACCCGGCUCGCUAAGCGAc | || ||| | |||||| uaAUUGAGCCCAUGUUUUCGCUu 2 22 116 138 [ce6:II:10560116-10560138:-] 0.5722 125 6 -13.08 -0.1049 MIMAT0000021 cel-miR-50 174624 cdc-48.1 ggguucuUAUGGUCUGUAUAgu :| :: ||||||| uauugccGUUUUUGACAUAUaa 3 16 259 280 [ce6:II:10559974-10559995:-] 0.5722 127 0 -10.47 -0.1062 MIMAT0000034 cel-miR-62 174624 cdc-48.1 gacauucgaucuAAUGUAUAgu | |||||| uauugccguuuuUGACAUAUaa 3 11 259 280 [ce6:II:10559974-10559995:-] 0.5722 122 0 -6.65 -0.1052 MIMAT0000047 cel-miR-75 174624 cdc-48.1 acUUCGGCCA-ACCAUCGAAAUu :|||| | | | |||||| uuGAGCCCAUGUUUUCGCUUUAg 2 21 119 141 [ce6:II:10560113-10560135:-] 0.5722 123 6 -12.01 -0.1392 MIMAT0000047 cel-miR-75 174624 cdc-48.1 acUUCGGCCA-ACCAUCGAAAUu :|||| | | | |||||| uuGAGCCCAUGUUUUCGCUUUAg 2 21 119 141 [ce6:II:10560113-10560135:-] 0.5722 123 6 -12.01 -0.1376 MIMAT0000051 cel-miR-79 174624 cdc-48.1 ucgaaaccauuggauCGAAAUa |||||| ugagcccauguuuucGCUUUAg 2 8 120 141 [ce6:II:10560113-10560134:-] 0.5722 120 6 -7.98 -0.1406 MIMAT0000051 cel-miR-79 174624 cdc-48.1 ucgaaaccauuggauCGAAAUa |||||| ugagcccauguuuucGCUUUAg 2 8 120 141 [ce6:II:10560113-10560134:-] 0.5722 120 6 -7.98 -0.1390 MIMAT0000061 cel-miR-90 174624 cdc-48.1 uccCCGUAAGUUUGUUGUAUAgu | |:||: ::|||||| auuGCCGUUU--UUGACAUAUaa 3 21 260 280 [ce6:II:10559974-10559994:-] 0.5722 125 0 -7.45 -0.1052

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 cdc-48.1; C06A1.1 cel-miR-251 100 114 UUAUUCUCGCCGUGGUGAUGAAUU :|||||||:||| ----------UUACCACUAUUUAU cdc-48.1; C06A1.1 cel-miR-257 15 40 AGUGACCCAUGAGG---ACUAUGAG- :|||| || || |||||||| CUACUGAGU-CUAUGUAUGAUACUCG cdc-48.1; C06A1.1 cel-miR-53 134 162 UCGUGC-CUUUGUUUAC--AUGCCCAC- || ||||: |||| ||||| || CGCUUUAGAAAUUAAUGGUUACGGAUGA cdc-48.1; C06A1.1 cel-miR-58 259 294 -UAACGGCAU-GACU-----------UGCUAGAGU |||||||| :||| ||||| || UAUUGCCGUUUUUGACAUAUAAAUGUACGAUGUCU cdc-48.1; C06A1.1 cel-miR-80 132 158 -AGCCGAAAG--UUGAUUACUAGAGU- || ||||| ||:|||||:|: |: UUC-GCUUUAGAAAUUAAUGGUUACGG cdc-48.1; C06A1.1 cel-miR-81 134 167 UGAUCGAA-------------AGUGC-UACUAGAGU |||| |:||| |||||||: ---CGCUUUAGAAAUUAAUGGUUACGGAUGAUCUUC cdc-48.1; C06A1.1 cel-miR-82 148 167 UGACCGAAAGUGC-UACUAGAGU |||: :||| |||||||: -AUGGU---UACGGAUGAUCUUC cdc-48.1; C06A1.1 cel-miR-251 90 113 uuauucucgccgUGGUGAUGAAUu |||||||:||| aacccccgatttACCACTATTTAt cdc-48.1; C06A1.1 cel-miR-257 14 38 AG-UGACCC--AUGAGGACUAUGAG || |||| | ||: : |||||||| TCTACTGAGTCTATGTATGATACTC cdc-48.1; C06A1.1 cel-miR-53 135 160 ucgugcCUUUGUUUAC--AUGCCCAC ||||: |||| ||||| || gctttaGAAATTAATGGTTACGGATG cdc-48.1; C06A1.1 cel-miR-54 132 160 gAGCCUAAUACUU------CUAAUGCCCAu ||| ||| ||| |:|||||| | tTCGCTTTA-GAAATTAATGGTTACGGATg cdc-48.1; C06A1.1 cel-miR-58 260 293 UAACGGCA-----UG-------ACUUGCUAGAGu |||||||| || || ||||| || ATTGCCGTTTTTGACATATAAATGTACGATGTCt cdc-48.1; C06A1.1 cel-miR-80 148 166 agCCGAAAGUUGAUUACUAGAgu ||:| || :||||||| atGGTT----ACGGATGATCTtc cdc-48.1; C06A1.1 cel-miR-81 144 166 UGAUCGAAAGUG-CUACUAGAgu |:|| : |:|| |||||||| ATTAATGGTTACGGATGATCTtc cdc-48.1; C06A1.1 cel-miR-82 147 166 UGACCGAAAGUGCUACUAGAgu | ||| || |: |||||||| AATGG-TTACG-GATGATCTtc

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score cdc-48.1 RAID00074726 cel-miR-392-3p miRNA MIMAT0000768 cdc-48.1 mRNA 174624 Prediction 0.1828 cdc-48.1 RAID00369533 cel-miR-90-3p miRNA MIMAT0000061 cdc-48.1 mRNA 174624 Prediction 0.1828 cdc-48.1 RAID00803047 cel-miR-50-5p miRNA MIMAT0000021 cdc-48.1 mRNA 174624 Prediction 0.1828 cdc-48.1 RAID01514954 cel-miR-62 miRNA MIMAT0000034 cdc-48.1 mRNA 174624 Prediction 0.1828 cdc-48.1 RAID01973425 cel-miR-79-3p miRNA MIMAT0000051 cdc-48.1 mRNA 174624 Prediction 0.1828 cdc-48.1 RAID03376880 cel-miR-75-3p miRNA MIMAT0000047 cdc-48.1 mRNA 174624 Prediction 0.1828