iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-116120

Ensembl Protein ID

ENSSSCP00000023307.1

UniProt Accession

I3LGW3; I3LGW3_PIG

Genbank Protein ID

ENSSSCP00000023307

Protein Name

Probable ATP-dependent RNA helicase DDX58

Genbank Nucleotide ID

FP340205

Gene Name

DDX58

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000030408.1	ENSSSCT00000026775.1	ENSSSCP00000023307.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/CARD	3.90e-46	155.8	101	172

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/CARD

   S: 3    eeyrlllstlqdrvrklLdvtdvldkylseflleeekelilaaaetkgnmqaaelLLktL..vqkegWfrefl 73
           eeyr ll +lq+++++++ ++d+l  +++e+l+ +e+e+il++++ kg m++ae+++++L  ++ke+W+++++
   Q: 101  EEYRSLLRRLQPEFKTTINPKDILP-EIAECLISQECEEILQICSSKGLMAGAEKMVECLlrSDKENWPKTLK 172
           9************************.********************************************985 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

MTAEQRRNLH AFGDYVRKTL DPTFILSYMA PWFRDDEVQH IQAEKNNKGP TEAASLFLQF 60
LLELQEEGWF RGFLDALNQA GYCGLCEAIE SWDFQKIEKL EEYRSLLRRL QPEFKTTINP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACCACGCATC CGAGAAGAAA TGAAACCGCG CTGGGAAAGT GAGGGCTCGG GGGTTGGGCC 60
GGTTCCGCCC ATTTCCCAAC TCGTCGCAGT TTCGATTCTC GGTTCTTCAG CTACTCCGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0067--ATP-binding
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0547--Nucleotide-binding
KW-1185--Reference proteome
KW-0862--Zinc

Interpro

IPR031964--CARD_dom
IPR011545--DEAD/DEAH_box_helicase_dom
IPR011029--DEATH-like_dom
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR021673--RLR_CTR

PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS51789--RLR_CTR

Pfam

PF16739--CARD_2
PF00270--DEAD
PF00271--Helicase_C
PF11648--RIG-I_C-RD

SMART

SM00487--DEXDc
SM00490--HELICc

Gene Ontology

GO:0005524--F:ATP binding
GO:0016817--F:hydrolase activity, acting on acid anhydrides
GO:0003676--F:nucleic acid binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001898	Ailuropoda melanoleuca	80.32	0.00e+00	1472.00
IUUC-Apl-003966	Anas platyrhynchos	52.02	0.00e+00	883.00
IUUC-Aca-004499	Anolis carolinensis	47.18	0.00e+00	774.00
IUUC-Ame-011950	Astyanax mexicanus	42.22	0.00e+00	659.00
IUUC-Bta-012489	Bos taurus	82.41	0.00e+00	1527.00
IUUC-Cel-018230	Caenorhabditis elegans	29.78	4.00e-61	229.00
IUUC-Cja-018716	Callithrix jacchus	77.96	0.00e+00	1399.00
IUUC-Cfa-020269	Canis familiaris	81.34	0.00e+00	1483.00
IUUC-Cpo-022507	Cavia porcellus	71.23	0.00e+00	1302.00
IUUC-Cre-022916	Chlamydomonas reinhardtii	29.82	2.00e-08	55.10
IUUC-Csa-024209	Chlorocebus sabaeus	78.39	0.00e+00	1436.00
IUUC-Cho-025104	Choloepus hoffmanni	72.59	0.00e+00	1154.00
IUUC-Cin-025792	Ciona intestinalis	32.51	2.00e-74	273.00
IUUC-Cgl-026385	Colletotrichum gloeosporioides	25.14	4.00e-22	100.00
IUUC-Dre-028305	Danio rerio	33.66	3.00e-79	290.00
IUUC-Dno-028954	Dasypus novemcinctus	76.69	0.00e+00	1385.00
IUUC-Dor-030410	Dipodomys ordii	35.95	3.00e-79	290.00
IUUC-Ete-032950	Echinops telfairi	33.86	8.00e-56	212.00
IUUC-Eca-034039	Equus caballus	80.56	0.00e+00	1477.00
IUUC-Eeu-035009	Erinaceus europaeus	67.72	0.00e+00	894.00
IUUC-Fca-036169	Felis catus	82.42	0.00e+00	1540.00
IUUC-Fal-037579	Ficedula albicollis	53.11	0.00e+00	890.00
IUUC-Fso-038398	Fusarium solani	28.57	6.00e-11	63.50
IUUC-Gmo-038598	Gadus morhua	34.12	1.00e-75	277.00
IUUC-Gga-040467	Gallus gallus	32.10	4.00e-89	323.00
IUUC-Gac-042316	Gasterosteus aculeatus	29.30	5.00e-86	312.00
IUUC-Ggo-045318	Gorilla gorilla	76.25	0.00e+00	1312.00
IUUC-Hsa-046671	Homo sapiens	78.71	0.00e+00	1434.00
IUUC-Itr-047996	Ictidomys tridecemlineatus	74.84	0.00e+00	1370.00
IUUC-Lch-050461	Latimeria chalumnae	49.79	0.00e+00	841.00
IUUC-Loc-052582	Lepisosteus oculatus	45.73	0.00e+00	779.00
IUUC-Laf-054324	Loxodonta africana	78.46	0.00e+00	1414.00
IUUC-Mcc-055390	Macaca mulatta	77.74	0.00e+00	1421.00
IUUC-Meu-056365	Macropus eugenii	65.32	2.00e-132	466.00
IUUC-Mga-059205	Meleagris gallopavo	34.25	5.00e-91	328.00
IUUC-Mvi-060497	Microbotryum violaceum	30.97	4.00e-15	77.80
IUUC-Mmr-061407	Microcebus murinus	78.49	0.00e+00	1458.00
IUUC-Mdo-063079	Monodelphis domestica	32.05	1.00e-86	314.00
IUUC-Mmu-063939	Mus musculus	72.80	0.00e+00	1305.00
IUUC-Mpu-066226	Mustela putorius furo	81.01	0.00e+00	1384.00
IUUC-Mlu-068092	Myotis lucifugus	80.41	0.00e+00	1453.00
IUUC-Nfi-068405	Neosartorya fischeri	24.36	1.00e-25	112.00
IUUC-Nle-069479	Nomascus leucogenys	32.80	1.00e-80	294.00
IUUC-Opr-070246	Ochotona princeps	63.31	0.00e+00	633.00
IUUC-Ont-071702	Oreochromis niloticus	31.98	4.00e-83	302.00
IUUC-Oan-072742	Ornithorhynchus anatinus	60.61	0.00e+00	943.00
IUUC-Ocu-073959	Oryctolagus cuniculus	71.08	0.00e+00	1312.00
IUUC-Ola-086351	Oryzias latipes	33.01	2.00e-81	296.00
IUUC-Oga-089173	Otolemur garnettii	78.26	0.00e+00	1442.00
IUUC-Oar-089369	Ovis aries	81.85	0.00e+00	1513.00
IUUC-Ptr-091032	Pan troglodytes	78.71	0.00e+00	1434.00
IUUC-Pan-092383	Papio anubis	78.06	0.00e+00	1423.00
IUUC-Psi-093432	Pelodiscus sinensis	54.94	0.00e+00	999.00
IUUC-Pma-094367	Petromyzon marinus	41.40	7.00e-108	384.00
IUUC-Pfo-096401	Poecilia formosa	33.42	8.00e-89	321.00
IUUC-Pab-098416	Pongo abelii	78.27	0.00e+00	1329.00
IUUC-Pca-101006	Procavia capensis	79.75	0.00e+00	662.00
IUUC-Pva-102966	Pteropus vampyrus	81.75	0.00e+00	1499.00
IUUC-Pgr-103529	Puccinia graminis	24.80	2.00e-26	115.00
IUUC-Rno-105059	Rattus norvegicus	74.37	0.00e+00	855.00
IUUC-Sha-107622	Sarcophilus harrisii	32.37	2.00e-88	320.00
IUUC-Ssl-108450	Sclerotinia sclerotiorum	28.43	2.00e-05	45.80
IUUC-Sar-113202	Sorex araneus	66.15	0.00e+00	1000.00
IUUC-Tgu-117314	Taeniopygia guttata	52.11	0.00e+00	905.00
IUUC-Tru-118445	Takifugu rubripes	33.43	2.00e-83	303.00
IUUC-Tsy-119453	Tarsius syrichta	75.43	0.00e+00	783.00
IUUC-Tni-120711	Tetraodon nigroviridis	33.15	1.00e-87	317.00
IUUC-Tre-122194	Trichoderma reesei	24.50	2.00e-18	88.60
IUUC-Tbe-127644	Tupaia belangeri	42.98	2.00e-41	164.00
IUUC-Ttr-128421	Tursiops truncatus	79.80	0.00e+00	1227.00
IUUC-Vpa-130602	Vicugna pacos	82.40	0.00e+00	1455.00
IUUC-Xtr-131927	Xenopus tropicalis	50.27	0.00e+00	876.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence