iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
ULD/UDP/UFD/PB1	3.20e-17	63.4	167	250

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

ULD/UDP/UFD/PB1

   S: 4    vkvsykgeirsfaldlekpgkfedLlkavrt.lt..........elknsevalkYeDedGDlvtlksDedldkavsllaskksllrlliqk 83
           vkvs++g+++++++dl+ + ++ +Llka++  ++          ++k+s + ++YeD+dGD++ l++D+++d++ s      s++rl+i+k
   Q: 167  VKVSMDGAPYLRKIDLKTYKNYPELLKALENmFKvmigeycereGYKGSGFVPTYEDKDGDWM-LVGDVPWDMFSS------SCKRLRIMK 250
           9******************************7447789999999*******************.************......********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Protein Sequence
(Fasta)

MGGLKLRVPL LSPCLFLAFH ASDNTSLSSF NPNFDAPLYI SLSPFLQNSS TSSPRTRTRR 60
RRTRQEEQST QENTQEGNTK IDIDPKAMAY EKVNELNLKD TELCLGLPGR TEKIKEEQEV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATTTTTATAT TCTTTCGTTA TAATTATTAT ACATCCTTTG AAAGAAAAAG AAGAGGCAAT 60
AGAGATGGAC GGCTAAGATG TTAACGTAAA CAAAGTTGGC GGAGGGAAAA GAGGAGCGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0927--Auxin signaling pathway
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0678--Repressor
KW-0804--Transcription
KW-0805--Transcription regulation

Interpro

IPR033389--AUX/IAA_dom
IPR003311--AUX_IAA
IPR000270--PB1_dom

PROSITE

PS51745--PB1

Pfam

PF02309--AUX_IAA

Gene Ontology

GO:0005634--C:nucleus
GO:0003700--F:transcription factor activity, sequence-specific DNA binding
GO:0009734--P:auxin-activated signaling pathway
GO:0009733--P:response to auxin
GO:0006351--P:transcription, DNA-templated

KEGG

ath:AT3G23030

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-003830	Anas platyrhynchos	40.54	7.70e-01	28.10
IUUC-Aca-005149	Anolis carolinensis	40.74	2.50e+00	26.60
IUUC-Aly-005851	Arabidopsis lyrata	97.13	2.00e-87	313.00
IUUC-Bta-013069	Bos taurus	44.44	2.60e+00	26.60
IUUC-Bol-015571	Brassica oleracea	86.78	5.00e-85	305.00
IUUC-Bra-017079	Brassica rapa	86.78	1.00e-83	300.00
IUUC-Csa-023301	Chlorocebus sabaeus	44.44	2.40e+00	26.60
IUUC-Dno-029712	Dasypus novemcinctus	44.44	1.90e+00	26.90
IUUC-Dor-030441	Dipodomys ordii	44.44	2.50e+00	26.60
IUUC-Eca-034380	Equus caballus	44.44	2.20e+00	26.60
IUUC-Eeu-035316	Erinaceus europaeus	44.44	2.10e+00	26.60
IUUC-Fal-037539	Ficedula albicollis	44.44	2.70e+00	26.60
IUUC-Gga-041247	Gallus gallus	44.44	2.10e+00	26.20
IUUC-Ggo-044521	Gorilla gorilla	44.44	2.10e+00	26.90
IUUC-Hsa-046050	Homo sapiens	44.44	2.30e+00	26.60
IUUC-Itr-048478	Ictidomys tridecemlineatus	44.44	2.00e+00	26.20
IUUC-Mcc-055717	Macaca mulatta	44.44	2.40e+00	26.60
IUUC-Mmr-061149	Microcebus murinus	44.44	2.50e+00	26.60
IUUC-Mdo-062533	Monodelphis domestica	44.44	2.20e+00	26.60
IUUC-Mmu-063911	Mus musculus	44.44	2.30e+00	26.60
IUUC-Mpu-066246	Mustela putorius furo	44.44	2.50e+00	26.60
IUUC-Nle-069141	Nomascus leucogenys	44.44	2.40e+00	26.60
IUUC-Opr-070200	Ochotona princeps	44.44	2.50e+00	26.60
IUUC-Oar-090251	Ovis aries	44.44	1.70e+00	26.60
IUUC-Ptr-091125	Pan troglodytes	44.44	2.30e+00	26.60
IUUC-Pan-092349	Papio anubis	44.44	2.30e+00	26.60
IUUC-Pca-100306	Procavia capensis	44.44	1.90e+00	26.90
IUUC-Pva-103041	Pteropus vampyrus	44.44	3.80e+00	26.20
IUUC-Rno-105645	Rattus norvegicus	44.44	2.40e+00	26.60

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence