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Tag Content
UUCD2 ID IUUC-Laf-053938
UUCD1 version UUC-LoA-00370
Ensembl Protein ID ENSLAFP00000009092.3
UniProt Accession G3T6E8; G3T6E8_LOXAF
Protein Name E3 ubiquitin-protein ligase RNF168; RING finger protein 168; RING-type E3 ubiquitin transferase RNF168
Gene Name RNF168
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSLAFG00000010864.3 ENSLAFT00000010863.3 ENSLAFP00000009092.3
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/MIU 70.88 0.00e+00 743.00 IUUC-Hsa-046424
UBD/Alpha-Helix/UMI 70.88 0.00e+00 743.00 IUUC-Hsa-046424
E3 activity/RING/RING 70.88 0.00e+00 743.00 IUUC-Hsa-046424
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Loxodonta africana
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
E3 ubiquitin-protein ligase required for accumulation of repair proteins to sites of DNA damage. Acts with UBE2N/UBC13 to amplify the RNF8-dependent histone ubiquitination. Recruited to sites of DNA damage at double-strand breaks (DSBs) by binding to ubiquitinated histone H2A and H2AX and amplifies the RNF8-dependent H2A ubiquitination, promoting the formation of 'Lys-63'-linked ubiquitin conjugates. This leads to concentrate ubiquitinated histones H2A and H2AX at DNA lesions to the threshold required for recruitment of TP53BP1 and BRCA1. Also recruited at DNA interstrand cross-links (ICLs) sites and promotes accumulation of 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. Following DNA damage, promotes the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF8, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites. Not able to initiate 'Lys-63'-linked ubiquitination in vitro; possibly due to partial occlusion of the UBE2N/UBC13-binding region. Catalyzes monoubiquitination of 'Lys-13' and 'Lys-15' of nucleosomal histone H2A (H2AK13Ub and H2AK15Ub, respectively).
Protein Sequence
(Fasta)
MAVPKDAIPS LSECQCQICM EILIEPVTFP CNHTLCNPCF QSTVEKANLC CPFCRRRVSS 60
WTRYHARRNS LVNMELWEKI QKYYPKECKL RACGQESEEI VDDYQPVRLL SIPGELRREY 120
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Protein Fasta Sequence



>IUUC-Laf-053938|UBD,MIU;UBD,UMI;E3,RING|Loxodonta africana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGCCGTAC CTAAGGACGC CATCCCGTCC TTGTCGGAAT GCCAGTGCCA GATCTGCATG 60
GAAATCCTAA TCGAACCCGT AACCTTTCCT TGTAACCACA CGCTCTGTAA TCCGTGCTTC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Laf-053938|UBD,MIU;UBD,UMI;E3,RING|Loxodonta africana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0156--Chromatin regulator
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR034725--RNF168
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005829--C:cytosol
GO:0005654--C:nucleoplasm
GO:0043234--C:protein complex
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0031491--F:nucleosome binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0006302--P:double-strand break repair
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0035518--P:histone H2A monoubiquitination
GO:0036351--P:histone H2A-K13 ubiquitination
GO:0036352--P:histone H2A-K15 ubiquitination
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001573 Ailuropoda melanoleuca 70.66 0.00e+00 712.00
IUUC-Apl-003963 Anas platyrhynchos 42.83 3.00e-71 262.00
IUUC-Aca-004420 Anolis carolinensis 68.10 2.00e-45 176.00
IUUC-Ame-011521 Astyanax mexicanus 51.69 5.00e-35 142.00
IUUC-Bta-013002 Bos taurus 68.17 0.00e+00 696.00
IUUC-Cja-019945 Callithrix jacchus 69.10 0.00e+00 680.00
IUUC-Cfa-020533 Canis familiaris 68.75 0.00e+00 703.00
IUUC-Cpo-021643 Cavia porcellus 56.87 2.00e-140 492.00
IUUC-Csa-023638 Chlorocebus sabaeus 67.42 0.00e+00 702.00
IUUC-Cho-024319 Choloepus hoffmanni 72.27 0.00e+00 701.00
IUUC-Cgl-026426 Colletotrichum gloeosporioides 32.00 7.00e-10 58.50
IUUC-Dre-028519 Danio rerio 52.14 3.00e-34 139.00
IUUC-Dno-029294 Dasypus novemcinctus 73.66 0.00e+00 733.00
IUUC-Ete-032714 Echinops telfairi 60.15 1.00e-110 393.00
IUUC-Eca-033343 Equus caballus 73.25 0.00e+00 750.00
IUUC-Eeu-034633 Erinaceus europaeus 34.62 8.00e-27 114.00
IUUC-Fca-036251 Felis catus 70.43 0.00e+00 745.00
IUUC-Fal-037048 Ficedula albicollis 43.28 3.00e-78 285.00
IUUC-Gmo-039400 Gadus morhua 44.35 8.00e-29 118.00
IUUC-Gga-040444 Gallus gallus 39.03 9.00e-69 254.00
IUUC-Ggo-044940 Gorilla gorilla 67.25 8.00e-142 496.00
IUUC-Hsa-046424 Homo sapiens 69.10 0.00e+00 702.00
IUUC-Itr-048965 Ictidomys tridecemlineatus 68.30 0.00e+00 661.00
IUUC-Lch-050649 Latimeria chalumnae 36.47 3.00e-54 206.00
IUUC-Loc-051847 Lepisosteus oculatus 32.78 3.00e-48 185.00
IUUC-Mcc-055360 Macaca mulatta 67.24 0.00e+00 675.00
IUUC-Meu-056684 Macropus eugenii 48.45 3.00e-115 409.00
IUUC-Mga-059699 Meleagris gallopavo 40.63 1.00e-71 264.00
IUUC-Mmr-060779 Microcebus murinus 71.01 0.00e+00 763.00
IUUC-Mdo-062225 Monodelphis domestica 52.55 5.00e-122 431.00
IUUC-Mmu-064239 Mus musculus 54.39 9.00e-97 347.00
IUUC-Mpu-066141 Mustela putorius furo 71.53 0.00e+00 744.00
IUUC-Mlu-067945 Myotis lucifugus 71.55 0.00e+00 754.00
IUUC-Nle-069769 Nomascus leucogenys 69.27 0.00e+00 713.00
IUUC-Opr-070905 Ochotona princeps 58.13 8.00e-115 407.00
IUUC-Oan-073531 Ornithorhynchus anatinus 42.78 4.00e-66 244.00
IUUC-Ocu-073832 Oryctolagus cuniculus 63.54 3.00e-176 611.00
IUUC-Oga-088318 Otolemur garnettii 71.11 0.00e+00 729.00
IUUC-Oar-089647 Ovis aries 66.44 0.00e+00 673.00
IUUC-Ptr-090516 Pan troglodytes 69.10 0.00e+00 719.00
IUUC-Pan-092302 Papio anubis 66.09 0.00e+00 670.00
IUUC-Psi-093604 Pelodiscus sinensis 40.68 9.00e-88 317.00
IUUC-Pab-097729 Pongo abelii 68.40 0.00e+00 703.00
IUUC-Pca-100552 Procavia capensis 73.71 1.00e-154 539.00
IUUC-Pva-102780 Pteropus vampyrus 71.35 0.00e+00 753.00
IUUC-Rno-105461 Rattus norvegicus 59.79 2.00e-152 531.00
IUUC-Sha-106809 Sarcophilus harrisii 54.66 8.00e-146 510.00
IUUC-Sar-113579 Sorex araneus 57.57 1.00e-155 543.00
IUUC-Tsy-119217 Tarsius syrichta 48.54 6.00e-56 211.00
IUUC-Tbe-127622 Tupaia belangeri 69.44 0.00e+00 723.00
IUUC-Ttr-128988 Tursiops truncatus 74.83 0.00e+00 771.00
IUUC-Vpa-130302 Vicugna pacos 73.20 2.00e-144 505.00
Created Date 25-Jun-2017

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