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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Mmu-064367
Ensembl Protein ID ENSMUSP00000019649.3
UniProt Accession P0CG49; P02248; P02249; P02250; P62991; Q29120; Q62317; Q64223; Q8VCH1; Q91887; Q91888; Q9CXY4; Q9CZM0; Q9D1R5; Q9D8D9; Q9ET23; Q9ET24; Q9Z0H9; UBB_MOUSE
Genbank Protein ID CAA35999.1; BAB28242.1; BAB22630.1; BAB29028.1; AAH19850.1
Protein Name Polyubiquitin-B; Ubiquitin
Genbank Nucleotide ID X51703; AK012443; AK003190; AK013873; BC019850
Gene Name Ubb
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000019505.7 ENSMUST00000019649.3 ENSMUSP00000019649.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
AREsitemicroRNATRANSFACRepTar
miRNAMapRAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Mentha
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusdbPTM
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
ULD/UBL/NEDD8 1.10e-164 536.2 229 304
ULD/UDP/UBQ/UBQ_PIM 5.70e-119 389.4 229 301
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   ULD/UBL/NEDD8

   S: 1    mlikvktLtgkeieieieesdtierikerveekeGiPPsqqrliyaGkqleddktaadynlekgsvLhLvLaLrGG 76
    m+i+vktLtgk+i++e+e+sdtie++k+++++keGiPP+qqrli+aGkqled++t++dyn++k+s+LhLvL+LrGG
   Q: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
    89*************************************************************************9 PP
   


   ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkk 73
    m+++vktl+gk+++lev+++dt+e++K+ki+++ g+pp+qq+LI+aGk+L+D +tLs+++i+++s++hlv++
   Q: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 301
    99********************************************************************986 PP
   

Organism Mus musculus
Functional Description
(View)

Functional Description



     Ubiquitin: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Ubiquitin: Exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling.
Protein Sequence
(Fasta)
MQIFVKTLTG KTITLEVEPS DTIENVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLSDYN 60
IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVEPSDTIE NVKAKIQDKE GIPPDQQRLI 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Mmu-064367|ULD,NEDD8;ULD,UBQ_PIM|Mus musculus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTTTGACTCC TCACCAATCA GCGCTGGCGC CGCAAGGAGG TTTCCAGAGC TTTCGAGGGA 60
GGGCCCTTTA ACTTGGATTC ATCCGCGTGA TGATTTTTTC AATTTTTTGC ACGAGAGGAG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-064367|ULD,NEDD8;ULD,UBQ_PIM|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0832--Ubl conjugation

Interpro

IPR019956--Ubiquitin
IPR029071--Ubiquitin-rel_dom
IPR019954--Ubiquitin_CS
IPR000626--Ubiquitin_dom

PROSITE

PS00299--UBIQUITIN_1
PS50053--UBIQUITIN_2

Pfam

PF00240--ubiquitin

PRINTS

PR00348--UBIQUITIN

SMART

SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005739--C:mitochondrion
GO:0043209--C:myelin sheath
GO:0043005--C:neuron projection
GO:0043025--C:neuronal cell body
GO:0005654--C:nucleoplasm
GO:0060612--P:adipose tissue development
GO:0007623--P:circadian rhythm
GO:0097009--P:energy homeostasis
GO:0060613--P:fat pad development
GO:0008585--P:female gonad development
GO:0007144--P:female meiosis I
GO:0021888--P:hypothalamus gonadotrophin-releasing hormone neuron development
GO:0008584--P:male gonad development
GO:0007141--P:male meiosis I
GO:0047497--P:mitochondrion transport along microtubule
GO:0048812--P:neuron projection morphogenesis
GO:0007219--P:Notch signaling pathway
GO:1902255--P:positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator
GO:0051881--P:regulation of mitochondrial membrane potential
GO:1901214--P:regulation of neuron death
GO:0061136--P:regulation of proteasomal protein catabolic process
GO:0072520--P:seminiferous tubule development
GO:0010992--P:ubiquitin homeostasis

KEGG mmu:22187
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000772 Aegilops tauschii 46.96 5.00e-47 183.00
IUUC-Aml-001483 Ailuropoda melanoleuca 99.56 7.00e-129 452.00
IUUC-Aly-006259 Arabidopsis lyrata 95.74 4.00e-168 583.00
IUUC-Afu-009031 Aspergillus fumigatus 92.68 6.00e-165 573.00
IUUC-Ani-009444 Aspergillus nidulans 96.05 7.00e-167 579.00
IUUC-Bta-012771 Bos taurus 99.67 1.00e-173 602.00
IUUC-Bol-016524 Brassica oleracea 95.74 4.00e-168 583.00
IUUC-Cre-022556 Chlamydomonas reinhardtii 97.37 3.00e-82 296.00
IUUC-Cgl-026543 Colletotrichum gloeosporioides 96.05 3.00e-124 437.00
IUUC-Dor-031044 Dipodomys ordii 100.00 4.00e-77 279.00
IUUC-Dse-031434 Dothistroma septosporum 96.05 3.00e-124 437.00
IUUC-Eca-033850 Equus caballus 99.56 7.00e-129 452.00
IUUC-Fca-036501 Felis catus 99.56 7.00e-129 452.00
IUUC-Fal-036678 Ficedula albicollis 99.67 4.00e-174 603.00
IUUC-Fox-037730 Fusarium oxysporum 95.61 6.00e-124 436.00
IUUC-Gga-041058 Gallus gallus 100.00 1.00e-174 605.00
IUUC-Hvu-047805 Hordeum vulgare 34.31 6.00e-39 154.00
IUUC-Lpe-050731 Leersia perrieri 34.74 1.00e-42 167.00
IUUC-Mga-059240 Meleagris gallopavo 98.15 1.00e-88 318.00
IUUC-Mac-065145 Musa acuminata 86.18 2.00e-69 254.00
IUUC-Mpu-066106 Mustela putorius furo 83.61 2.00e-138 484.00
IUUC-Ncr-068770 Neurospora crassa 96.05 7.00e-166 576.00
IUUC-Opr-070947 Ochotona princeps 100.00 9.00e-130 455.00
IUUC-Ocu-074508 Oryctolagus cuniculus 99.56 7.00e-129 452.00
IUUC-Oba-075152 Oryza barthii 34.43 3.00e-41 162.00
IUUC-Olo-080418 Oryza longistaminata 34.47 9.00e-31 127.00
IUUC-Oni-082299 Oryza nivara 33.77 3.00e-40 159.00
IUUC-Opu-083917 Oryza punctata 32.21 7.00e-30 125.00
IUUC-Oru-084963 Oryza rufipogon 78.43 1.00e-60 224.00
IUUC-Oga-089171 Otolemur garnettii 99.35 3.00e-84 303.00
IUUC-Pva-102696 Pteropus vampyrus 99.56 7.00e-129 452.00
IUUC-Ptt-103710 Puccinia triticina 96.05 6.00e-168 583.00
IUUC-Pte-104277 Pyrenophora teres 96.05 3.00e-124 437.00
IUUC-Pyt-104779 Pyrenophora triticirepentis 96.05 3.00e-124 437.00
IUUC-Tsy-119558 Tarsius syrichta 89.54 6.00e-74 269.00
IUUC-Tni-120338 Tetraodon nigroviridis 100.00 3.00e-84 303.00
IUUC-Tca-121145 Theobroma cacao 96.05 6.00e-168 583.00
IUUC-Tae-125795 Triticum aestivum 96.05 3.00e-168 584.00
IUUC-Vda-129663 Verticillium dahliae 96.05 3.00e-124 437.00
Created Date 25-Jun-2017

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