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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Mmu-063166
UUCD1 version UUC-MuM-00025
Ensembl Protein ID ENSMUSP00000033264.4
UniProt Accession Q62191; RO52_MOUSE
Genbank Protein ID AAB51154.1
Protein Name E3 ubiquitin-protein ligase TRIM21; 52 kDa Ro protein; 52 kDa ribonucleoprotein autoantigen Ro/SS-A; RING-type E3 ubiquitin transferase TRIM21; Ro(SS-A); Sjoegren syndrome type A antigen; Tripartite motif-containing protein 21
Genbank Nucleotide ID L27990
Gene Name Trim21; Ro52; Ssa1
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000030966.13 ENSMUST00000033264.11 ENSMUSP00000033264.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
AREsitemicroRNATRANSFACRepTar
RAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/RING RING 18248090
Classification
Family E-value Score Start End
E3 activity/RING/U-box 2.30e-07 31.9 8 70
E3 activity/RING/RING 4.30e-06 28.3 12 51
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliq 66
    ee C+I l++M +P+ +++G+ + +++I + ++gg++cP +rq++ ++l Pn + ++++
   Q: 8 EEVTCSICLDPMVEPMSIECGHCFCKECIFEVGKNGGSSCPECRQQFLLRNLRPNRHIANMVE 70
    7899**************************99999********************99888776 PP
   


   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C+iCl+++ + p++ CgH+f+++C+ + +++ +CP Cr
   Q: 12 CSICLDPMVE-PMSIECGHCFCKECIFEV-----GKNGGSSCPECR 51
    ********99.***************777.....6899999****8 PP
   

Organism Mus musculus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase whose activity is dependent on E2 enzymes, UBE2D1, UBE2D2, UBE2E1 and UBE2E2. Forms a ubiquitin ligase complex in cooperation with the E2 UBE2D2 that is used not only for the ubiquitination of USP4 and IKBKB but also for its self-ubiquitination. Component of cullin-RING-based SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes such as SCF(SKP2)-like complexes. A TRIM21-containing SCF(SKP2)-like complex is shown to mediate ubiquitination of CDKN1B ('Thr-187' phosphorylated-form), thereby promoting its degradation by the proteasome. Monoubiquitinates IKBKB that will negatively regulates Tax-induced NF-kappa-B signaling. Negatively regulates IFN-beta production post-pathogen recognition by polyubiquitin-mediated degradation of IRF3. Mediates the ubiquitin-mediated proteasomal degradation of IgG1 heavy chain, which is linked to the VCP-mediated ER-associated degradation (ERAD) pathway. Promotes IRF8 ubiquitination, which enhanced the ability of IRF8 to stimulate cytokine genes transcription in macrophages. Plays a role in the regulation of the cell cycle progression. Enhances the decapping activity of DCP2. Exists as a ribonucleoprotein particle present in all mammalian cells studied and composed of a single polypeptide and one of four small RNA molecules. At least two isoforms are present in nucleated and red blood cells, and tissue specific differences in RO/SSA proteins have been identified. The common feature of these proteins is their ability to bind HY RNAs.2. Involved in the regulation of innate immunity and the inflammatory response in response to IFNG/IFN-gamma. Organizes autophagic machinery by serving as a platform for the assembly of ULK1, Beclin 1/BECN1 and ATG8 family members and recognizes specific autophagy targets, thus coordinating target recognition with assembly of the autophagic apparatus and initiation of autophagy. Acts as an autophagy receptor for the degradation of IRF3, hence attenuating type I interferon (IFN)-dependent immune responses (By similarity).
E3 ubiquitin-protein ligase whose activity is dependent on E2 enzymes, UBE2D1, UBE2D2, UBE2E1 and UBE2E2. Forms a ubiquitin ligase complex in cooperation with the E2 UBE2D2 that is used not only for the ubiquitination of USP4 and IKBKB but also for its self-ubiquitination. Component of cullin-RING-based SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complexes such as SCF(SKP2)-like complexes. A TRIM21-containing SCF(SKP2)-like complex is shown to mediate ubiquitination of CDKN1B ('Thr-187' phosphorylated-form), thereby promoting its degradation by the proteasome. Monoubiquitinates IKBKB that will negatively regulates Tax-induced NF-kappa-B signaling. Negatively regulates IFN-beta production post-pathogen recognition by polyubiquitin-mediated degradation of IRF3. Mediates the ubiquitin-mediated proteasomal degradation of IgG1 heavy chain, which is linked to the VCP-mediated ER-associated degradation (ERAD) pathway. Promotes IRF8 ubiquitination, which enhanced the ability of IRF8 to stimulate cytokine genes transcription in macrophages. Plays a role in the regulation of the cell cycle progression. Enhances the decapping activity of DCP2. Exists as a ribonucleoprotein particle present in all mammalian cells studied and composed of a single polypeptide and one of four small RNA molecules. At least two isoforms are present in nucleated and red blood cells, and tissue specific differences in RO/SSA proteins have been identified. The common feature of these proteins is their ability to bind HY RNAs.2. Involved in the regulation of innate immunity and the inflammatory response in response to IFNG/IFN-gamma. Organizes autophagic machinery by serving as a platform for the assembly of ULK1, Beclin 1/BECN1 and ATG8 family members and recognizes specific autophagy targets, thus coordinating target recognition with assembly of the autophagic apparatus and initiation of autophagy. Acts as an autophagy receptor for the degradation of IRF3, hence attenuating type I interferon (IFN)-dependent immune responses (By similarity).
Protein Sequence
(Fasta)
MSLEKMWEEV TCSICLDPMV EPMSIECGHC FCKECIFEVG KNGGSSCPEC RQQFLLRNLR 60
PNRHIANMVE NLKQIAQNTK KSTQETHCMK HGEKLHLFCE EDGQALCWVC AQSGKHRDHT 120
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Protein Fasta Sequence



>IUUC-Mmu-063166|E3,RING;E3,U-box|Mus musculus
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Nucleotide Sequence
(Fasta)
AGACCTGCCT CTGAGAGGAA ACTGAAAGTG AAATTTGGAC TGCAGGCTTG CAAAAGCGAA 60
GCTGGGAGCA CATAACTAAA GCTGAGGACC CTGGTTAGGT GAGTGAGACT GGGACCCCTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Mmu-063166|E3,RING;E3,U-box|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0131--Cell cycle
KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0903--Direct protein sequencing
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0687--Ribonucleoprotein
KW-0694--RNA-binding
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001870--B30.2/SPRY
IPR003879--Butyrophylin
IPR013320--ConA-like_dom
IPR006574--PRY
IPR003877--SPRY_dom
IPR000315--Znf_B-box
IPR020457--Znf_B-box_chordata
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50188--B302_SPRY
PS50119--ZF_BBOX
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13765--PRY
PF00622--SPRY
PF00643--zf-B_box
PF00097--zf-C3HC4

PRINTS

PR01406--BBOXZNFINGER
PR01407--BUTYPHLNCDUF

SMART

SM00336--BBOX
SM00589--PRY
SM00184--RING
SM00449--SPRY

Gene Ontology

GO:0005776--C:autophagosome
GO:0005737--C:cytoplasm
GO:0031410--C:cytoplasmic vesicle
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0000932--C:P-body
GO:0003677--F:DNA binding
GO:0042802--F:identical protein binding
GO:0003723--F:RNA binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0007049--P:cell cycle
GO:0045087--P:innate immune response
GO:0032088--P:negative regulation of NF-kappaB transcription factor activity
GO:0090086--P:negative regulation of protein deubiquitination
GO:1902187--P:negative regulation of viral release from host cell
GO:0032897--P:negative regulation of viral transcription
GO:0010508--P:positive regulation of autophagy
GO:0045787--P:positive regulation of cell cycle
GO:0051091--P:positive regulation of sequence-specific DNA binding transcription factor activity
GO:0051865--P:protein autoubiquitination
GO:0031648--P:protein destabilization
GO:0006513--P:protein monoubiquitination
GO:0000209--P:protein polyubiquitination
GO:0070206--P:protein trimerization
GO:0016567--P:protein ubiquitination
GO:0034341--P:response to interferon-gamma

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001896 Ailuropoda melanoleuca 70.28 0.00e+00 679.00
IUUC-Bta-013083 Bos taurus 63.97 4.00e-167 580.00
IUUC-Cja-019002 Callithrix jacchus 71.24 0.00e+00 672.00
IUUC-Cfa-020415 Canis familiaris 66.95 0.00e+00 649.00
IUUC-Cpo-021948 Cavia porcellus 65.37 2.00e-179 621.00
IUUC-Csa-023135 Chlorocebus sabaeus 71.37 5.00e-176 610.00
IUUC-Cho-024493 Choloepus hoffmanni 57.61 3.00e-80 291.00
IUUC-Dno-030061 Dasypus novemcinctus 64.24 3.00e-176 611.00
IUUC-Ete-033168 Echinops telfairi 62.16 1.00e-150 526.00
IUUC-Eca-033578 Equus caballus 69.33 0.00e+00 649.00
IUUC-Eeu-034749 Erinaceus europaeus 54.60 5.00e-125 441.00
IUUC-Fca-035468 Felis catus 64.26 3.00e-177 614.00
IUUC-Ggo-045190 Gorilla gorilla 70.93 0.00e+00 640.00
IUUC-Hsa-046583 Homo sapiens 70.50 0.00e+00 638.00
IUUC-Itr-048632 Ictidomys tridecemlineatus 70.84 0.00e+00 642.00
IUUC-Lch-050386 Latimeria chalumnae 33.12 2.00e-71 263.00
IUUC-Laf-053455 Loxodonta africana 68.64 7.00e-176 609.00
IUUC-Mcc-054609 Macaca mulatta 71.58 4.00e-176 610.00
IUUC-Mmr-061369 Microcebus murinus 67.60 2.00e-165 575.00
IUUC-Mpu-066889 Mustela putorius furo 69.41 0.00e+00 670.00
IUUC-Mlu-067647 Myotis lucifugus 69.63 7.00e-173 600.00
IUUC-Nle-069567 Nomascus leucogenys 70.28 0.00e+00 635.00
IUUC-Opr-071178 Ochotona princeps 61.47 6.00e-157 546.00
IUUC-Oar-090413 Ovis aries 67.90 1.00e-174 606.00
IUUC-Ptr-091187 Pan troglodytes 70.50 0.00e+00 638.00
IUUC-Pan-092231 Papio anubis 71.58 3.00e-176 611.00
IUUC-Ppa-095897 Physcomitrella patens 50.00 3.00e-10 59.70
IUUC-Pab-098079 Pongo abelii 66.08 4.00e-125 441.00
IUUC-Pca-100639 Procavia capensis 64.59 2.00e-125 442.00
IUUC-Pva-102476 Pteropus vampyrus 68.33 0.00e+00 632.00
IUUC-Rno-105054 Rattus norvegicus 89.85 0.00e+00 760.00
IUUC-Sar-113204 Sorex araneus 67.88 1.00e-170 592.00
IUUC-Ssc-116291 Sus scrofa 66.88 2.00e-178 618.00
IUUC-Tsy-118803 Tarsius syrichta 56.18 2.00e-129 455.00
IUUC-Tbe-127337 Tupaia belangeri 53.61 7.00e-93 333.00
IUUC-Ttr-128914 Tursiops truncatus 67.17 1.00e-163 569.00
Created Date 25-Jun-2017

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