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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Hsa-046547
UUCD1 version UUC-HoS-00070
Ensembl Protein ID ENSP00000256474.2
UniProt Accession P40337; B2RE45; Q13599; Q6PDA9; VHL_HUMAN
Genbank Protein ID AAB64200.1; BAG38142.1; EAW64064.1; AAH58831.1; AAA98614.1; CAA65343.1
Protein Name Von Hippel-Lindau disease tumor suppressor; Protein G7; pVHL
Genbank Nucleotide ID AF010238; L15409; AC034193; BC058831; U54612; X96489
Gene Name VHL
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSG00000134086.7 ENST00000256474.2 ENSP00000256474.2
ENSG00000134086.7 ENST00000345392.2 ENSP00000344757.2
Annotation
Cancer Mutation
TCGAICGCCOSMICCGAP
IntOGen
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressTCGAICGC
COSMICTHPAHPM
DNA & RNA Element
UTRdbAREsiteCircNetmiRTarBase
microRNATRANSFACmiRWalkTargetScan
miRecordsRepTarSomamiRmiRcode
RAID2
Protein-protein Interaction
IIDPINAHINTMentha
InWeb_IM
Protein 3D Structure
PDBMMDB
Disease-associated Information
ClinVarGWASdbOMIM
Drug and target
TTDManually
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusdbPTM
BioGRIDmUbiSiDa
DNA Methylation
MethyCancerTCGAICGCCOSMIC
Protein Expression/Proteomics
THPAHPMGPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box SOCS 20300531; 19228690; 12912922; 19695223; 19305426; 20026589; 11574546; 11739384; 12604794; 17350623; 15777842
Reviewed
Classification
Family Identity E-value Score Source Orthology
E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box 26.72 8.00e-04 40.40 IUUC-Dme-031988
Organism Homo sapiens
Functional Description
(View)

Functional Description



     Involved in the ubiquitination and subsequent proteasomal degradation via the von Hippel-Lindau ubiquitination complex. Seems to act as a target recruitment subunit in the E3 ubiquitin ligase complex and recruits hydroxylated hypoxia-inducible factor (HIF) under normoxic conditions. Involved in transcriptional repression through interaction with HIF1A, HIF1AN and histone deacetylases. Ubiquitinates, in an oxygen-responsive manner, ADRB2.
Involved in the ubiquitination and subsequent proteasomal degradation via the von Hippel-Lindau ubiquitination complex. Seems to act as a target recruitment subunit in the E3 ubiquitin ligase complex and recruits hydroxylated hypoxia-inducible factor (HIF) under normoxic conditions. Involved in transcriptional repression through interaction with HIF1A, HIF1AN and histone deacetylases. Ubiquitinates, in an oxygen-responsive manner, ADRB2.
Protein Sequence
(Fasta)
MPRRAENWDE AEVGAEEAGV EEYGPEEDGG EESGAEESGP EESGPEELGA EEEMEAGRPR 60
PVLRSVNSRE PSQVIFCNRS PRVVLPVWLN FDGEPQPYPT LPPGTGRRIH SYRGHLWLFR 120
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Protein Fasta Sequence



>IUUC-Hsa-046547|E3,SOCS|Homo sapiens
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Nucleotide Sequence
(Fasta)
TGAGTGTTTA TGTTTGTAGT TTTAATTGCT CTGAAGTAAA TATCTGATTT TCCAATTTCC 60
ACCAGAGTGC TCTGCACATA GTAGGTCTAA TTATTTTTCC CTCTTTACTA ATCACCCATG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Hsa-046547|E3,SOCS|Homo sapiens
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Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0024--Alternative initiation
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0985--Congenital erythrocytosis
KW-0963--Cytoplasm
KW-0225--Disease mutation
KW-0472--Membrane
KW-0539--Nucleus
KW-0621--Polymorphism
KW-1185--Reference proteome
KW-0677--Repeat
KW-0043--Tumor suppressor
KW-0833--Ubl conjugation pathway

Interpro

IPR002714--VHL
IPR024048--VHL_alpha_dom
IPR024053--VHL_beta_dom
IPR022772--VHL_tumour_suppress_b/a_dom

Pfam

PF01847--VHL
PF17211--VHL_C

Gene Ontology

GO:0005829--C:cytosol
GO:0005783--C:endoplasmic reticulum
GO:0016020--C:membrane
GO:0005739--C:mitochondrion
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0030891--C:VCB complex
GO:0019899--F:enzyme binding
GO:0008134--F:transcription factor binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0000902--P:cell morphogenesis
GO:0043066--P:negative regulation of apoptotic process
GO:0008285--P:negative regulation of cell proliferation
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0061428--P:negative regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0045597--P:positive regulation of cell differentiation
GO:0045893--P:positive regulation of transcription, DNA-templated
GO:0050821--P:protein stabilization
GO:0016567--P:protein ubiquitination
GO:0006508--P:proteolysis
GO:0061418--P:regulation of transcription from RNA polymerase II promoter in response to hypoxia
GO:0006355--P:regulation of transcription, DNA-templated

KEGG hsa:7428
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002327 Ailuropoda melanoleuca 83.87 2.00e-68 252.00
IUUC-Apl-003580 Anas platyrhynchos 71.43 2.00e-26 110.00
IUUC-Aca-004492 Anolis carolinensis 78.74 4.00e-57 213.00
IUUC-Ang-009806 Aspergillus niger 40.62 1.30e-01 27.30
IUUC-Ame-011818 Astyanax mexicanus 46.80 1.00e-46 179.00
IUUC-Bta-013459 Bos taurus 94.27 3.00e-84 303.00
IUUC-Cel-018173 Caenorhabditis elegans 31.87 9.00e-05 39.70
IUUC-Cja-019826 Callithrix jacchus 97.45 1.00e-86 312.00
IUUC-Cfa-021280 Canis familiaris 94.81 1.00e-82 299.00
IUUC-Cpo-022544 Cavia porcellus 86.03 2.00e-84 304.00
IUUC-Cre-022809 Chlamydomonas reinhardtii 43.33 4.00e-08 52.80
IUUC-Csa-023644 Chlorocebus sabaeus 97.47 6.00e-88 316.00
IUUC-Cho-024479 Choloepus hoffmanni 64.39 7.00e-41 159.00
IUUC-Cin-025505 Ciona intestinalis 27.35 2.00e-05 42.00
IUUC-Cme-027232 Cyanidioschyzon merolae 33.78 1.00e-05 43.50
IUUC-Dre-028350 Danio rerio 53.42 4.00e-33 134.00
IUUC-Dno-029207 Dasypus novemcinctus 87.04 6.00e-51 193.00
IUUC-Dor-030912 Dipodomys ordii 66.45 3.00e-50 191.00
IUUC-Dme-031988 Drosophila melanogaster 26.72 2.00e-05 42.40
IUUC-Eca-034007 Equus caballus 97.50 8.00e-19 84.70
IUUC-Fca-036350 Felis catus 94.23 5.00e-82 296.00
IUUC-Fal-037192 Ficedula albicollis 69.33 4.00e-56 210.00
IUUC-Gmo-038921 Gadus morhua 55.97 2.00e-44 171.00
IUUC-Gga-041016 Gallus gallus 69.93 2.00e-55 208.00
IUUC-Gac-042560 Gasterosteus aculeatus 51.05 1.00e-35 142.00
IUUC-Ggo-045419 Gorilla gorilla 99.06 9.00e-91 325.00
IUUC-Itr-048225 Ictidomys tridecemlineatus 95.51 4.00e-85 306.00
IUUC-Lch-050463 Latimeria chalumnae 65.10 6.00e-54 203.00
IUUC-Loc-052053 Lepisosteus oculatus 57.34 2.00e-47 181.00
IUUC-Laf-053893 Loxodonta africana 91.77 1.00e-82 298.00
IUUC-Mcc-055347 Macaca mulatta 64.49 3.00e-64 237.00
IUUC-Mtr-058490 Medicago truncatula 48.48 8.00e-03 33.90
IUUC-Mdo-062169 Monodelphis domestica 75.53 4.00e-38 149.00
IUUC-Mmu-064366 Mus musculus 94.96 8.00e-76 276.00
IUUC-Mpu-066593 Mustela putorius furo 93.59 3.00e-83 301.00
IUUC-Mlu-066926 Myotis lucifugus 88.11 2.00e-86 311.00
IUUC-Nle-069724 Nomascus leucogenys 98.59 8.00e-90 322.00
IUUC-Opr-070679 Ochotona princeps 77.84 6.00e-75 273.00
IUUC-Ont-071332 Oreochromis niloticus 53.38 5.00e-42 163.00
IUUC-Ola-086869 Oryzias latipes 50.65 4.00e-40 157.00
IUUC-Oga-089124 Otolemur garnettii 94.97 2.00e-84 304.00
IUUC-Oar-089799 Ovis aries 90.91 3.00e-49 186.00
IUUC-Ptr-091186 Pan troglodytes 99.01 8.00e-55 205.00
IUUC-Pan-092150 Papio anubis 95.77 3.00e-87 314.00
IUUC-Psi-094039 Pelodiscus sinensis 67.38 1.00e-52 198.00
IUUC-Pma-094129 Petromyzon marinus 47.24 6.00e-27 113.00
IUUC-Pfo-096892 Poecilia formosa 50.35 6.00e-37 146.00
IUUC-Pab-097822 Pongo abelii 99.06 9.00e-90 322.00
IUUC-Pca-101058 Procavia capensis 81.86 6.00e-79 286.00
IUUC-Pva-102932 Pteropus vampyrus 96.84 3.00e-87 314.00
IUUC-Rno-105050 Rattus norvegicus 93.04 1.00e-85 308.00
IUUC-Sha-106738 Sarcophilus harrisii 78.00 1.00e-42 163.00
IUUC-Ssc-115973 Sus scrofa 92.36 5.00e-83 300.00
IUUC-Tgu-116663 Taeniopygia guttata 71.74 1.00e-33 133.00
IUUC-Tru-118654 Takifugu rubripes 56.64 1.00e-42 165.00
IUUC-Tca-121306 Theobroma cacao 38.89 3.90e-02 29.60
IUUC-Ttr-128418 Tursiops truncatus 94.30 2.00e-85 308.00
IUUC-Vpa-130268 Vicugna pacos 90.91 3.00e-48 184.00
IUUC-Xtr-132506 Xenopus tropicalis 66.20 6.00e-55 206.00
Created Date 25-Jun-2017

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