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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Hsa-046249
UUCD1 version UUC-HoS-00041
Ensembl Protein ID ENSP00000362578.4
UniProt Accession O76064; A6NN24; A8MYC0; B4DPG0; Q53H16; Q5NKW5; RNF8_HUMAN
Genbank Protein ID BAA33557.1; AAQ14887.1; BAA31621.2; BAG60572.1; AAP36114.1; BAD96485.1; CAB75689.1; EAX03944.1; EAX03945.1; AAH07517.1
Protein Name E3 ubiquitin-protein ligase RNF8; RING finger protein 8; RING-type E3 ubiquitin transferase RNF8
Genbank Nucleotide ID AB012770; AF334675; AB014546; AK298319; BT007446; AK222765; AL096712; CH471081; CH471081; BC007517
Gene Name RNF8; KIAA0646
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSG00000112130.16 ENST00000373479.8 ENSP00000362578.4
ENSG00000112130.16 ENST00000494320.5 ENSP00000420268.1
ENSG00000112130.16 ENST00000229866.10 ENSP00000229866.6
ENSG00000112130.16 ENST00000469316.5 ENSP00000419859.1
ENSG00000112130.16 ENST00000469731.5 ENSP00000418879.1
ENSG00000112130.16 ENST00000498460.1 ENSP00000417599.1
Annotation
Cancer Mutation
TCGAICGCCOSMICCGAP
IntOGen
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressTCGAICGC
COSMICTHPAHPM
DNA & RNA Element
UTRdbAREsitecircBaseCircNet
miRTarBasemicroRNATRANSFACTargetScan
RepTarSomamiRmiRcodeRAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
MenthaInWeb_IM
Protein 3D Structure
PDBMMDB
Disease-associated Information
GWASdbOMIM
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusdbPTM
HPRDPhospho.ELMUniProtBioGRID
mUbiSiDa
DNA Methylation
TCGAICGCCOSMIC
Protein Expression/Proteomics
THPAHPMGPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/RING RING 16215985; 20656690; 18948756; 20080757; 19797077; 22713238; 22980979; 23760478
Classification
Family E-value Score Start End
E3 activity/RING/RING 4.40e-07 32.0 403 441
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
    C+iC e f + ++l+C H f+ C++ w ++++ CP+Cr
   Q: 403 CIICSEYFIE-AVTLNCAHSFCSYCINEW------MKRKIECPICR 441
    ********99.899***************......**********8 PP
   

Organism Homo sapiens
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). Also controls the recruitment of UIMC1-BRCC3 (RAP80-BRCC36) and PAXIP1/PTIP to DNA damage sites. Also recruited at DNA interstrand cross-links (ICLs) sites and catalyzes 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20/C1orf86 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Promotes the formation of 'Lys-63'-linked polyubiquitin chains via interactions with the specific ubiquitin-conjugating UBE2N/UBC13 and ubiquitinates non-histone substrates such as PCNA. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains via interaction with the ubiquitin-conjugating UBE2L6/UBCH8, leading to degradation of substrate proteins such as CHEK2, JMJD2A/KDM4A and KU80/XRCC5: it is still unclear how the preference toward 'Lys-48'- versus 'Lys-63'-linked ubiquitination is regulated but it could be due to RNF8 ability to interact with specific E2 specific ligases. For instance, interaction with phosphorylated HERC2 promotes the association between RNF8 and UBE2N/UBC13 and favors the specific formation of 'Lys-63'-linked ubiquitin chains. Promotes non-homologous end joining (NHEJ) by promoting the 'Lys-48'-linked ubiquitination and degradation the of KU80/XRCC5. Following DNA damage, mediates the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF168, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites (PubMed:11322894, PubMed:14981089, PubMed:17724460, PubMed:18001824, PubMed:18001825, PubMed:18006705, PubMed:18077395, PubMed:18337245, PubMed:18948756, PubMed:19015238, PubMed:19124460, PubMed:19202061, PubMed:19203578, PubMed:19203579, PubMed:20550933, PubMed:21558560, PubMed:21857671, PubMed:21911360, PubMed:22266820, PubMed:22373579, PubMed:22531782, PubMed:22705371, PubMed:22865450, PubMed:22980979). Following DNA damage, mediates the ubiquitination and degradation of POLD4/p12, a subunit of DNA polymerase delta. In the absence of POLD4, DNA polymerase delta complex exhibits higher proofreading activity (PubMed:23233665). In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation. Involved in the activation of ATM by promoting histone H2B ubiquitination, which indirectly triggers histone H4 'Lys-16' acetylation (H4K16ac), establishing a chromatin environment that promotes efficient activation of ATM kinase. Required in the testis, where it plays a role in the replacement of histones during spermatogenesis. At uncapped telomeres, promotes the joining of deprotected chromosome ends by inducing H2A ubiquitination and TP53BP1 recruitment, suggesting that it may enhance cancer development by aggravating telomere-induced genome instability in case of telomeric crisis. Promotes the assembly of RAD51 at DNA DSBs in the absence of BRCA1 and TP53BP1 Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. May be required for proper exit from mitosis after spindle checkpoint activation and may regulate cytokinesis. May play a role in the regulation of RXRA-mediated transcriptional activity. Not involved in RXRA ubiquitination by UBE2E2 (PubMed:11322894, PubMed:14981089, PubMed:17724460, PubMed:18001824, PubMed:18001825, PubMed:18006705, PubMed:18077395, PubMed:18337245, PubMed:18948756, PubMed:19015238, PubMed:19124460, PubMed:19202061, PubMed:19203578, PubMed:19203579, PubMed:20550933, PubMed:21558560, PubMed:21857671, PubMed:21911360, PubMed:22266820, PubMed:22373579, PubMed:22531782, PubMed:22705371, PubMed:22865450, PubMed:22980979).
E3 ubiquitin-protein ligase that plays a key role in DNA damage signaling via 2 distinct roles: by mediating the 'Lys-63'-linked ubiquitination of histones H2A and H2AX and promoting the recruitment of DNA repair proteins at double-strand breaks (DSBs) sites, and by catalyzing 'Lys-48'-linked ubiquitination to remove target proteins from DNA damage sites. Following DNA DSBs, it is recruited to the sites of damage by ATM-phosphorylated MDC1 and catalyzes the 'Lys-63'-linked ubiquitination of histones H2A and H2AX, thereby promoting the formation of TP53BP1 and BRCA1 ionizing radiation-induced foci (IRIF). Also controls the recruitment of UIMC1-BRCC3 (RAP80-BRCC36) and PAXIP1/PTIP to DNA damage sites. Also recruited at DNA interstrand cross-links (ICLs) sites and catalyzes 'Lys-63'-linked ubiquitination of histones H2A and H2AX, leading to recruitment of FAAP20/C1orf86 and Fanconi anemia (FA) complex, followed by interstrand cross-link repair. H2A ubiquitination also mediates the ATM-dependent transcriptional silencing at regions flanking DSBs in cis, a mechanism to avoid collision between transcription and repair intermediates. Promotes the formation of 'Lys-63'-linked polyubiquitin chains via interactions with the specific ubiquitin-conjugating UBE2N/UBC13 and ubiquitinates non-histone substrates such as PCNA. Substrates that are polyubiquitinated at 'Lys-63' are usually not targeted for degradation. Also catalyzes the formation of 'Lys-48'-linked polyubiquitin chains via interaction with the ubiquitin-conjugating UBE2L6/UBCH8, leading to degradation of substrate proteins such as CHEK2, JMJD2A/KDM4A and KU80/XRCC5: it is still unclear how the preference toward 'Lys-48'- versus 'Lys-63'-linked ubiquitination is regulated but it could be due to RNF8 ability to interact with specific E2 specific ligases. For instance, interaction with phosphorylated HERC2 promotes the association between RNF8 and UBE2N/UBC13 and favors the specific formation of 'Lys-63'-linked ubiquitin chains. Promotes non-homologous end joining (NHEJ) by promoting the 'Lys-48'-linked ubiquitination and degradation the of KU80/XRCC5. Following DNA damage, mediates the ubiquitination and degradation of JMJD2A/KDM4A in collaboration with RNF168, leading to unmask H4K20me2 mark and promote the recruitment of TP53BP1 at DNA damage sites (PubMed:11322894, PubMed:14981089, PubMed:17724460, PubMed:18001824, PubMed:18001825, PubMed:18006705, PubMed:18077395, PubMed:18337245, PubMed:18948756, PubMed:19015238, PubMed:19124460, PubMed:19202061, PubMed:19203578, PubMed:19203579, PubMed:20550933, PubMed:21558560, PubMed:21857671, PubMed:21911360, PubMed:22266820, PubMed:22373579, PubMed:22531782, PubMed:22705371, PubMed:22865450, PubMed:22980979). Following DNA damage, mediates the ubiquitination and degradation of POLD4/p12, a subunit of DNA polymerase delta. In the absence of POLD4, DNA polymerase delta complex exhibits higher proofreading activity (PubMed:23233665). In addition to its function in damage signaling, also plays a role in higher-order chromatin structure by mediating extensive chromatin decondensation. Involved in the activation of ATM by promoting histone H2B ubiquitination, which indirectly triggers histone H4 'Lys-16' acetylation (H4K16ac), establishing a chromatin environment that promotes efficient activation of ATM kinase. Required in the testis, where it plays a role in the replacement of histones during spermatogenesis. At uncapped telomeres, promotes the joining of deprotected chromosome ends by inducing H2A ubiquitination and TP53BP1 recruitment, suggesting that it may enhance cancer development by aggravating telomere-induced genome instability in case of telomeric crisis. Promotes the assembly of RAD51 at DNA DSBs in the absence of BRCA1 and TP53BP1 Also involved in class switch recombination in immune system, via its role in regulation of DSBs repair. May be required for proper exit from mitosis after spindle checkpoint activation and may regulate cytokinesis. May play a role in the regulation of RXRA-mediated transcriptional activity. Not involved in RXRA ubiquitination by UBE2E2 (PubMed:11322894, PubMed:14981089, PubMed:17724460, PubMed:18001824, PubMed:18001825, PubMed:18006705, PubMed:18077395, PubMed:18337245, PubMed:18948756, PubMed:19015238, PubMed:19124460, PubMed:19202061, PubMed:19203578, PubMed:19203579, PubMed:20550933, PubMed:21558560, PubMed:21857671, PubMed:21911360, PubMed:22266820, PubMed:22373579, PubMed:22531782, PubMed:22705371, PubMed:22865450, PubMed:22980979).
Protein Sequence
(Fasta)
MGEPGFFVTG DRAGGRSWCL RRVGMSAGWL LLEDGCEVTV GRGFGVTYQL VSKICPLMIS 60
RNHCVLKQNP EGQWTIMDNK SLNGVWLNRA RLEPLRVYSI HQGDYIQLGV PLENKENAEY 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Hsa-046249|E3,RING|Homo sapiens
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CTTGCGCAGG CGTAGTGCTC CTGCTTCCTG GCCGAGGGCG GGCGAGCGGA GCCTGCTTTC 60
GCAGCGATCG CGAGCGTGTG GCGATTGCTT CTGTCTGTTA TTTAGATATG GAAGCTGAGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Hsa-046249|E3,RING|Homo sapiens
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0025--Alternative splicing
KW-0131--Cell cycle
KW-0132--Cell division
KW-0156--Chromatin regulator
KW-0158--Chromosome
KW-0181--Complete proteome
KW-0903--Direct protein sequencing
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0498--Mitosis
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-0621--Polymorphism
KW-1185--Reference proteome
KW-0779--Telomere
KW-0808--Transferase
KW-0832--Ubl conjugation
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000253--FHA_dom
IPR017335--RNF8
IPR008984--SMAD_FHA_domain
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50006--FHA_DOMAIN
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00498--FHA

SMART

SM00240--FHA
SM00184--RING

Gene Ontology

GO:0000781--C:chromosome, telomeric region
GO:0005829--C:cytosol
GO:0030496--C:midbody
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0035861--C:site of double-strand break
GO:0000151--C:ubiquitin ligase complex
GO:0003682--F:chromatin binding
GO:0042393--F:histone binding
GO:0042802--F:identical protein binding
GO:0042803--F:protein homodimerization activity
GO:0031625--F:ubiquitin protein ligase binding
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0051301--P:cell division
GO:0006974--P:cellular response to DNA damage stimulus
GO:0006302--P:double-strand break repair
GO:0006303--P:double-strand break repair via nonhomologous end joining
GO:0043486--P:histone exchange
GO:0070535--P:histone H2A K63-linked ubiquitination
GO:0033522--P:histone H2A ubiquitination
GO:0033523--P:histone H2B ubiquitination
GO:0036297--P:interstrand cross-link repair
GO:0045190--P:isotype switching
GO:0007067--P:mitotic nuclear division
GO:0034244--P:negative regulation of transcription elongation from RNA polymerase II promoter
GO:0045739--P:positive regulation of DNA repair
GO:0051865--P:protein autoubiquitination
GO:0070936--P:protein K48-linked ubiquitination
GO:0070534--P:protein K63-linked ubiquitination
GO:0010212--P:response to ionizing radiation
GO:0007286--P:spermatid development
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG hsa:9025
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002124 Ailuropoda melanoleuca 83.85 0.00e+00 659.00
IUUC-Apl-003664 Anas platyrhynchos 80.00 2.00e-39 154.00
IUUC-Aca-005036 Anolis carolinensis 56.42 4.00e-120 424.00
IUUC-Ani-009177 Aspergillus nidulans 34.65 1.00e-07 51.60
IUUC-Ame-011537 Astyanax mexicanus 42.71 2.00e-88 319.00
IUUC-Bta-013297 Bos taurus 83.37 0.00e+00 634.00
IUUC-Cel-018658 Caenorhabditis elegans 41.07 3.00e-07 50.80
IUUC-Cja-019201 Callithrix jacchus 89.42 0.00e+00 724.00
IUUC-Cfa-021041 Canis familiaris 85.60 0.00e+00 702.00
IUUC-Csa-024133 Chlorocebus sabaeus 97.32 0.00e+00 853.00
IUUC-Cho-024624 Choloepus hoffmanni 74.88 1.00e-134 472.00
IUUC-Dre-027918 Danio rerio 42.64 1.00e-81 297.00
IUUC-Dno-029774 Dasypus novemcinctus 83.33 0.00e+00 681.00
IUUC-Dor-030190 Dipodomys ordii 71.96 2.00e-151 529.00
IUUC-Ete-032301 Echinops telfairi 66.67 4.00e-139 488.00
IUUC-Eca-033607 Equus caballus 85.78 3.00e-174 604.00
IUUC-Eeu-034888 Erinaceus europaeus 81.13 5.00e-120 424.00
IUUC-Fca-036075 Felis catus 83.74 0.00e+00 706.00
IUUC-Fal-037569 Ficedula albicollis 61.12 6.00e-118 417.00
IUUC-Gmo-038588 Gadus morhua 39.75 2.00e-72 266.00
IUUC-Gga-040777 Gallus gallus 58.69 5.00e-121 427.00
IUUC-Gac-042463 Gasterosteus aculeatus 42.67 8.00e-64 238.00
IUUC-Ggo-045269 Gorilla gorilla 98.97 0.00e+00 867.00
IUUC-Itr-048314 Ictidomys tridecemlineatus 83.78 0.00e+00 697.00
IUUC-Lch-049805 Latimeria chalumnae 49.79 5.00e-112 398.00
IUUC-Loc-052377 Lepisosteus oculatus 49.58 2.00e-92 333.00
IUUC-Mcc-055344 Macaca mulatta 97.12 0.00e+00 848.00
IUUC-Meu-055950 Macropus eugenii 62.88 1.00e-127 449.00
IUUC-Mla-059052 Melampsora laricipopulina 35.38 1.00e-09 56.20
IUUC-Mga-060049 Meleagris gallopavo 57.96 6.00e-120 424.00
IUUC-Mmr-061431 Microcebus murinus 84.85 0.00e+00 661.00
IUUC-Mdo-062016 Monodelphis domestica 67.72 2.00e-122 434.00
IUUC-Mmu-063235 Mus musculus 71.05 8.00e-178 616.00
IUUC-Mpu-066449 Mustela putorius furo 86.45 0.00e+00 737.00
IUUC-Mlu-067588 Myotis lucifugus 79.50 0.00e+00 626.00
IUUC-Nle-069192 Nomascus leucogenys 98.35 0.00e+00 862.00
IUUC-Opr-070300 Ochotona princeps 63.79 7.00e-141 493.00
IUUC-Ont-071998 Oreochromis niloticus 42.25 1.00e-66 247.00
IUUC-Oan-073610 Ornithorhynchus anatinus 65.65 4.00e-66 244.00
IUUC-Ocu-074603 Oryctolagus cuniculus 78.81 0.00e+00 634.00
IUUC-Ola-086681 Oryzias latipes 39.39 7.00e-70 258.00
IUUC-Oga-088183 Otolemur garnettii 84.95 0.00e+00 714.00
IUUC-Oar-090255 Ovis aries 83.93 2.00e-165 575.00
IUUC-Ptr-091029 Pan troglodytes 97.59 0.00e+00 790.00
IUUC-Pan-092241 Papio anubis 97.12 0.00e+00 850.00
IUUC-Psi-093506 Pelodiscus sinensis 60.66 1.00e-129 456.00
IUUC-Pma-094579 Petromyzon marinus 56.67 2.00e-26 113.00
IUUC-Pfo-097014 Poecilia formosa 42.15 8.00e-64 238.00
IUUC-Pab-098530 Pongo abelii 96.97 0.00e+00 795.00
IUUC-Pca-100939 Procavia capensis 62.14 2.00e-141 495.00
IUUC-Pva-103148 Pteropus vampyrus 78.40 0.00e+00 640.00
IUUC-Rno-105338 Rattus norvegicus 72.90 0.00e+00 640.00
IUUC-Sce-106282 Saccharomyces cerevisiae 33.71 4.00e-06 45.80
IUUC-Sha-107187 Sarcophilus harrisii 66.42 5.00e-105 374.00
IUUC-Sja-107948 Schizosaccharomyces japonicus 22.34 5.00e-09 55.80
IUUC-Sar-113356 Sorex araneus 64.85 3.00e-128 451.00
IUUC-Ssc-116290 Sus scrofa 84.47 0.00e+00 743.00
IUUC-Tru-117910 Takifugu rubripes 41.36 4.00e-61 229.00
IUUC-Tsy-119329 Tarsius syrichta 79.24 5.00e-168 583.00
IUUC-Tni-120521 Tetraodon nigroviridis 38.72 7.00e-61 228.00
IUUC-Tme-126989 Tuber melanosporum 32.76 1.00e-06 48.50
IUUC-Ttr-128997 Tursiops truncatus 79.06 2.00e-179 622.00
IUUC-Vpa-130154 Vicugna pacos 82.30 0.00e+00 695.00
IUUC-Xtr-132805 Xenopus tropicalis 51.46 3.00e-107 382.00
Created Date 25-Jun-2017

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