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Basic Information Integrated Annotations

Tag Content
iUUCD ID IUUC-Rno-104866
Ensembl Protein ID ENSRNOP00000020329.5
UniProt Accession Q920M9; Q06984; SIAH1_RAT
Genbank Protein ID AAL91362.1; BAB70753.1
Protein Name E3 ubiquitin-protein ligase SIAH1; RING-type E3 ubiquitin transferase SIAH1; Seven in absentia homolog 1; Siah-1a
Genbank Nucleotide ID AF389476; AB067814
Gene Name Siah1; Siah1a
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000015143.6 ENSRNOT00000020329.6 ENSRNOP00000020329.5
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
microRNATRANSFACmiRNAMapRAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Mentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 82.35 9.00e-126 446.00 IUUC-Dme-031700
E3 activity/RING/RING 99.65 9.00e-169 590.00 IUUC-Hsa-046357
E3 activity/RING/RING 100.00 4.00e-169 590.00 IUUC-Mmu-064129
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Functional Description
(View)

Functional Description



     E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (ELL2, MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3 (By similarity). Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Mediates E3 ubiquitin ligase activity either through direct binding to substrates or by functioning as the essential RING domain subunit of larger E3 complexes. Triggers the ubiquitin-mediated degradation of many substrates, including proteins involved in transcription regulation (ELL2, MYB, POU2AF1, PML and RBBP8), a cell surface receptor (DCC), cytoplasmic signal transduction molecules (KLF10/TIEG1 and NUMB), an antiapoptotic protein (BAG1), a microtubule motor protein (KIF22), a protein involved in synaptic vesicle function in neurons (SYP), a structural protein (CTNNB1) and SNCAIP. Confers constitutive instability to HIPK2 through proteasomal degradation. It is thereby involved in many cellular processes such as apoptosis, tumor suppression, cell cycle, axon guidance, transcription, spermatogenesis and TNF-alpha signaling. Has some overlapping function with SIAH2. Induces apoptosis in cooperation with PEG3 (By similarity). Upon nitric oxid (NO) generation that follows apoptotic stimulation, interacts with S-nitrosylated GAPDH, mediating the translocation of GAPDH to the nucleus. GAPDH acts as a stabilizer of SIAH1, facilitating the degradation of nuclear proteins.
Protein Sequence
(Fasta)
MSRQTATALP TGTSKCPPSQ RVPALTGTTA SNNDLASLFE CPVCFDYVLP PILQCQSGHL 60
VCSNCRPKLT CCPTCRGPLG SIRNLAMEKV ANSVLFPCKY ASSGCEITLP HTEKAEHEEL 120
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Protein Fasta Sequence



>IUUC-Rno-104866|E3,RING|Rattus norvegicus
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Nucleotide Sequence
(Fasta)
GGGAAGCCGG GCTGCCGGGC GGGCGCGCTC TCGAGGGCGG CGGCCCAGGG TGTCCCGTCG 60
GTCTCGGCGC CGGGAGAGGT GGAGGCGCGG TCCGCGGTGG CGGCGGTGGC GGCGGCGGCA 120
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Nucleotide Fasta Sequence



>IUUC-Rno-104866|E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0053--Apoptosis
KW-0131--Cell cycle
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0217--Developmental protein
KW-0221--Differentiation
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0744--Spermatogenesis
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR018121--7-in-absentia-prot_TRAF-dom
IPR004162--SINA-like
IPR008974--TRAF-like
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR013010--Znf_SIAH

PROSITE

PS50089--ZF_RING_2
PS51081--ZF_SIAH

Pfam

PF03145--Sina

Gene Ontology

GO:0030877--C:beta-catenin destruction complex
GO:0005829--C:cytosol
GO:0005769--C:early endosome
GO:0005634--C:nucleus
GO:0005886--C:plasma membrane
GO:0008022--F:protein C-terminus binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding
GO:0007049--P:cell cycle
GO:0030154--P:cell differentiation
GO:0007275--P:multicellular organism development
GO:0051402--P:neuron apoptotic process
GO:2001244--P:positive regulation of intrinsic apoptotic signaling pathway
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0031648--P:protein destabilization
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0007283--P:spermatogenesis

KEGG rno:140941
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000061 Aegilops tauschii 37.36 2.00e-44 172.00
IUUC-Aml-001186 Ailuropoda melanoleuca 99.29 4.00e-169 587.00
IUUC-Atr-002857 Amborella trichopoda 36.19 1.00e-44 172.00
IUUC-Apl-003813 Anas platyrhynchos 99.29 4.00e-169 586.00
IUUC-Aca-005014 Anolis carolinensis 99.29 2.00e-169 587.00
IUUC-Aly-006207 Arabidopsis lyrata 33.94 1.00e-41 163.00
IUUC-Ath-007049 Arabidopsis thaliana 33.45 8.00e-42 164.00
IUUC-Ame-011196 Astyanax mexicanus 97.52 8.00e-168 582.00
IUUC-Bta-012887 Bos taurus 99.29 4.00e-169 587.00
IUUC-Bdi-014200 Brachypodium distachyon 37.73 3.00e-45 175.00
IUUC-Bol-016263 Brassica oleracea 36.36 3.00e-42 165.00
IUUC-Bra-017336 Brassica rapa 36.29 5.00e-41 161.00
IUUC-Cel-018320 Caenorhabditis elegans 71.60 1.00e-114 406.00
IUUC-Cja-019796 Callithrix jacchus 99.65 8.00e-170 589.00
IUUC-Cfa-020642 Canis familiaris 99.29 4.00e-170 590.00
IUUC-Cpo-022348 Cavia porcellus 99.65 5.00e-170 589.00
IUUC-Csa-023974 Chlorocebus sabaeus 99.65 5.00e-170 590.00
IUUC-Cin-025674 Ciona intestinalis 78.37 6.00e-135 473.00
IUUC-Csv-026233 Ciona savignyi 84.65 2.00e-132 464.00
IUUC-Dre-028041 Danio rerio 97.87 9.00e-169 585.00
IUUC-Dno-029764 Dasypus novemcinctus 99.29 4.00e-169 587.00
IUUC-Dme-031700 Drosophila melanogaster 84.27 8.00e-120 422.00
IUUC-Ete-032423 Echinops telfairi 98.87 2.00e-158 551.00
IUUC-Eca-033536 Equus caballus 99.29 4.00e-169 586.00
IUUC-Eeu-035314 Erinaceus europaeus 98.87 1.00e-158 552.00
IUUC-Fca-035362 Felis catus 99.29 2.00e-169 587.00
IUUC-Fal-037487 Ficedula albicollis 99.29 4.00e-169 587.00
IUUC-Gga-040269 Gallus gallus 99.29 4.00e-169 586.00
IUUC-Gac-042282 Gasterosteus aculeatus 97.87 7.00e-168 582.00
IUUC-Gma-042926 Glycine max 34.04 1.00e-40 160.00
IUUC-Ggo-045444 Gorilla gorilla 99.65 5.00e-170 590.00
IUUC-Hsa-046357 Homo sapiens 99.65 5.00e-170 590.00
IUUC-Hvu-047574 Hordeum vulgare 37.00 2.00e-44 172.00
IUUC-Itr-048046 Ictidomys tridecemlineatus 99.65 5.00e-170 589.00
IUUC-Lch-049504 Latimeria chalumnae 98.58 3.00e-168 583.00
IUUC-Lpe-050879 Leersia perrieri 40.25 9.00e-43 167.00
IUUC-Loc-052191 Lepisosteus oculatus 99.65 3.00e-169 587.00
IUUC-Laf-053668 Loxodonta africana 99.29 4.00e-169 586.00
IUUC-Mcc-054640 Macaca mulatta 99.65 5.00e-170 590.00
IUUC-Mtr-058747 Medicago truncatula 35.19 1.00e-42 166.00
IUUC-Mga-059503 Meleagris gallopavo 99.29 2.00e-169 587.00
IUUC-Mmr-060794 Microcebus murinus 99.65 5.00e-170 589.00
IUUC-Mmu-064129 Mus musculus 100.00 2.00e-170 590.00
IUUC-Mac-065670 Musa acuminata 35.44 1.00e-42 166.00
IUUC-Mpu-066488 Mustela putorius furo 99.29 5.00e-169 586.00
IUUC-Mlu-067207 Myotis lucifugus 99.29 1.00e-169 588.00
IUUC-Nle-069706 Nomascus leucogenys 99.65 5.00e-170 589.00
IUUC-Ont-071849 Oreochromis niloticus 97.87 4.00e-168 583.00
IUUC-Ocu-074876 Oryctolagus cuniculus 99.65 9.00e-170 588.00
IUUC-Oba-075454 Oryza barthii 40.66 1.00e-42 167.00
IUUC-Obr-076037 Oryza brachyantha 35.43 2.00e-40 159.00
IUUC-Ogl-077712 Oryza glaberrima 40.66 1.00e-42 167.00
IUUC-Ogu-078910 Oryza glumaepatula 40.66 2.00e-42 166.00
IUUC-Oin-079749 Oryza indica 40.66 1.00e-42 167.00
IUUC-Olo-080244 Oryza longistaminata 35.43 2.00e-40 160.00
IUUC-Ome-081318 Oryza meridionalis 40.66 1.00e-42 166.00
IUUC-Oni-083109 Oryza nivara 40.66 1.00e-42 167.00
IUUC-Opu-084065 Oryza punctata 41.08 5.00e-43 167.00
IUUC-Oru-084785 Oryza rufipogon 40.66 1.00e-42 167.00
IUUC-Osa-085610 Oryza sativa 40.66 1.00e-42 167.00
IUUC-Ola-086814 Oryzias latipes 97.87 7.00e-168 582.00
IUUC-Oga-088399 Otolemur garnettii 99.65 5.00e-170 589.00
IUUC-Oar-089323 Ovis aries 99.29 6.00e-169 586.00
IUUC-Ptr-090692 Pan troglodytes 99.65 5.00e-170 589.00
IUUC-Pan-092012 Papio anubis 99.65 5.00e-170 590.00
IUUC-Psi-093687 Pelodiscus sinensis 99.29 1.00e-169 588.00
IUUC-Pma-094387 Petromyzon marinus 93.64 2.00e-159 554.00
IUUC-Ppa-095212 Physcomitrella patens 36.19 5.00e-41 161.00
IUUC-Pfo-097134 Poecilia formosa 97.87 7.00e-168 582.00
IUUC-Pab-097555 Pongo abelii 99.65 5.00e-170 590.00
IUUC-Pop-099970 Populus trichocarpa 34.90 2.00e-44 172.00
IUUC-Ppe-101760 Prunus persica 36.10 5.00e-44 171.00
IUUC-Sha-106547 Sarcophilus harrisii 99.29 2.00e-169 587.00
IUUC-Smo-109412 Selaginella moellendorffii 34.28 6.00e-40 157.00
IUUC-Sit-110595 Setaria italica 37.45 1.00e-41 163.00
IUUC-Sly-111259 Solanum lycopersicum 36.76 2.00e-41 162.00
IUUC-Stu-112571 Solanum tuberosum 36.76 1.00e-41 163.00
IUUC-Sbi-114090 Sorghum bicolor 37.11 2.00e-42 166.00
IUUC-Tgu-116579 Taeniopygia guttata 99.29 4.00e-169 586.00
IUUC-Tru-118250 Takifugu rubripes 93.26 1.00e-158 551.00
IUUC-Tni-120488 Tetraodon nigroviridis 97.52 2.00e-164 570.00
IUUC-Tca-121228 Theobroma cacao 35.50 2.00e-41 162.00
IUUC-Tae-123647 Triticum aestivum 37.36 2.00e-44 172.00
IUUC-Tur-126049 Triticum urartu 35.04 7.00e-39 154.00
IUUC-Ttr-129166 Tursiops truncatus 98.76 2.00e-142 498.00
IUUC-Vvi-131233 Vitis vinifera 34.64 4.00e-42 165.00
IUUC-Xtr-132553 Xenopus tropicalis 98.94 1.00e-169 588.00
IUUC-Xma-133670 Xiphophorus maculatus 97.87 7.00e-168 582.00
Created Date 25-Jun-2017

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