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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Mmu-063488
UUCD1 version UUC-MuM-00441
Ensembl Protein ID ENSMUSP00000072729.4
UniProt Accession Q5KU39; Q05AE9; Q3TPS1; Q80V99; Q8BKK6; Q8CG01; Q8CJC3; VPS41_MOUSE
Genbank Protein ID BAD88410.1; AAN73032.1; BAC34707.1; BAE37664.1; AAH23243.1; AAH49916.1; AAI19363.1; AAI25300.1
Protein Name Vacuolar protein sorting-associated protein 41 homolog; VAM2 homolog
Genbank Nucleotide ID AB028843; AF327407; AK051658; AK164177; BC023243; BC049916; BC119362; BC125299
Gene Name Vps41
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000041236.7 ENSMUST00000072961.4 ENSMUSP00000072729.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
AREsitecircBasemicroRNATRANSFAC
RepTarmiRNAMapRAID2
Protein-protein Interaction
IIDiRefIndexPINAHINT
Mentha
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusmUbiSiDa
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 97.34 0.00e+00 1686.00 IUUC-Hsa-047030
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Mus musculus
Functional Description
(View)

Functional Description



     Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act in part as a core component of the putative HOPS endosomal tethering complex is proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is proposed to be recruited to Rab7 on the late endosomal membrane and to regulate late endocytic, phagocytic and autophagic traffic towards lysosomes. Involved in homotypic vesicle fusions between late endosomes and in heterotypic fusions between late endosomes and lysosomes implicated in degradation of endocytosed cargo. Required for fusion of autophagosomes with lysosomes. May link the HOPS complex to endosomal Rab7 via its association with RILP and to lysosomal membranes via its association with ARL8B, suggesting that these interactions may bring the compartments to close proximity for fusion. Involved in the direct trans-Golgi network to late endosomes transport of lysosomal membrane proteins independently of HOPS. Involved in sorting to the regulated secretory pathway presumably implicating the AP-3 adaptor complex. May play a role in HOPS-independent function in the regulated secretory pathway (By similarity).
Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act in part as a core component of the putative HOPS endosomal tethering complex is proposed to be involved in the Rab5-to-Rab7 endosome conversion probably implicating MON1A/B, and via binding SNAREs and SNARE complexes to mediate tethering and docking events during SNARE-mediated membrane fusion. The HOPS complex is proposed to be recruited to Rab7 on the late endosomal membrane and to regulate late endocytic, phagocytic and autophagic traffic towards lysosomes. Involved in homotypic vesicle fusions between late endosomes and in heterotypic fusions between late endosomes and lysosomes implicated in degradation of endocytosed cargo. Required for fusion of autophagosomes with lysosomes. May link the HOPS complex to endosomal Rab7 via its association with RILP and to lysosomal membranes via its association with ARL8B, suggesting that these interactions may bring the compartments to close proximity for fusion. Involved in the direct trans-Golgi network to late endosomes transport of lysosomal membrane proteins independently of HOPS. Involved in sorting to the regulated secretory pathway presumably implicating the AP-3 adaptor complex. May play a role in HOPS-independent function in the regulated secretory pathway (By similarity).
Protein Sequence
(Fasta)
MAEAEEQETE SLEESTDESE EESEEEPKLK YERLSNGVTE ILQKDAASCM TVHDKFLALG 60
THYGKVYLLD VQGNITQKFD VSPVKINQIS LDDSGEHMGV CSEDGKLQVF GLYSGEEFHE 120
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Protein Fasta Sequence



>IUUC-Mmu-063488|E3,RING|Mus musculus
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Nucleotide Sequence
(Fasta)
GTCACATGAC TCTCAGGCTG CGCTATGGCG GAAGCAGAGG AGCAGGTAAA CGCTGGCAGA 60
ACTAGTTCGG GGCAGCCGGG AGCTGGAGAC CCGAGCGAGG GGTTCTGGGA CGCGGAGTGC 120
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Nucleotide Fasta Sequence



>IUUC-Mmu-063488|E3,RING|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0072--Autophagy
KW-0181--Complete proteome
KW-0968--Cytoplasmic vesicle
KW-0967--Endosome
KW-0333--Golgi apparatus
KW-0458--Lysosome
KW-0472--Membrane
KW-0479--Metal-binding
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0813--Transport
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR000547--Clathrin_H-chain/VPS_repeat
IPR011990--TPR-like_helical_dom
IPR016902--VPS41
IPR015943--WD40/YVTN_repeat-like_dom
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50236--CHCR
PS50089--ZF_RING_2

Pfam

PF00637--Clathrin

SMART

SM00299--CLH

Gene Ontology

GO:0030123--C:AP-3 adaptor complex
GO:0071439--C:clathrin complex
GO:0030136--C:clathrin-coated vesicle
GO:0033263--C:CORVET complex
GO:0005829--C:cytosol
GO:0005769--C:early endosome
GO:0010008--C:endosome membrane
GO:0005798--C:Golgi-associated vesicle
GO:0030897--C:HOPS complex
GO:0005770--C:late endosome
GO:0031902--C:late endosome membrane
GO:0005765--C:lysosomal membrane
GO:0016020--C:membrane
GO:0015630--C:microtubule cytoskeleton
GO:0051020--F:GTPase binding
GO:0042802--F:identical protein binding
GO:0008017--F:microtubule binding
GO:0008270--F:zinc ion binding
GO:0006914--P:autophagy
GO:0034058--P:endosomal vesicle fusion
GO:0008333--P:endosome to lysosome transport
GO:0048193--P:Golgi vesicle transport
GO:1902774--P:late endosome to lysosome transport
GO:0006623--P:protein targeting to vacuole
GO:0045055--P:regulated exocytosis
GO:0035542--P:regulation of SNARE complex assembly
GO:0042144--P:vacuole fusion, non-autophagic

KEGG mmu:218035
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000207 Aegilops tauschii 34.38 4.00e-136 479.00
IUUC-Aml-001435 Ailuropoda melanoleuca 96.37 0.00e+00 1669.00
IUUC-Atr-002975 Amborella trichopoda 37.07 2.00e-161 562.00
IUUC-Apl-003254 Anas platyrhynchos 90.81 0.00e+00 1584.00
IUUC-Aca-005067 Anolis carolinensis 89.00 0.00e+00 1556.00
IUUC-Aly-005839 Arabidopsis lyrata 35.88 9.00e-158 551.00
IUUC-Ath-006625 Arabidopsis thaliana 35.74 8.00e-158 551.00
IUUC-Ago-007960 Ashbya gossypii 25.03 6.00e-69 256.00
IUUC-Acl-008174 Aspergillus clavatus 29.54 1.00e-54 209.00
IUUC-Afl-008524 Aspergillus flavus 42.22 5.00e-38 153.00
IUUC-Afu-009054 Aspergillus fumigatus 28.59 5.00e-58 220.00
IUUC-Ani-009250 Aspergillus nidulans 26.78 1.00e-47 185.00
IUUC-Ang-009665 Aspergillus niger 29.14 2.00e-57 218.00
IUUC-Aor-010230 Aspergillus oryzae 42.22 6.00e-38 153.00
IUUC-Ate-010464 Aspergillus terreus 40.86 9.00e-40 159.00
IUUC-Ame-011311 Astyanax mexicanus 66.71 0.00e+00 1134.00
IUUC-Bgr-012099 Blumeria graminis 26.67 9.00e-50 192.00
IUUC-Bta-013327 Bos taurus 96.37 0.00e+00 1672.00
IUUC-Bci-013660 Botrytis cinerea 27.19 1.00e-49 192.00
IUUC-Bdi-014641 Brachypodium distachyon 36.44 2.00e-149 523.00
IUUC-Bol-015685 Brassica oleracea 35.68 1.00e-157 550.00
IUUC-Bra-016918 Brassica rapa 35.20 3.00e-156 545.00
IUUC-Cel-018385 Caenorhabditis elegans 28.07 1.00e-90 327.00
IUUC-Cja-018994 Callithrix jacchus 96.85 0.00e+00 1671.00
IUUC-Cfa-020405 Canis familiaris 96.37 0.00e+00 1668.00
IUUC-Cpo-022163 Cavia porcellus 96.49 0.00e+00 1659.00
IUUC-Cre-022626 Chlamydomonas reinhardtii 28.36 4.00e-41 163.00
IUUC-Csa-023134 Chlorocebus sabaeus 97.34 0.00e+00 1685.00
IUUC-Cho-024913 Choloepus hoffmanni 84.71 0.00e+00 1377.00
IUUC-Cin-025239 Ciona intestinalis 43.66 0.00e+00 714.00
IUUC-Cgl-026706 Colletotrichum gloeosporioides 28.73 1.00e-52 202.00
IUUC-Cne-026799 Cryptococcus neoformans 36.19 7.00e-164 571.00
IUUC-Cme-027200 Cyanidioschyzon merolae 23.78 6.00e-10 60.10
IUUC-Dre-028115 Danio rerio 81.98 0.00e+00 1432.00
IUUC-Dor-030947 Dipodomys ordii 90.44 0.00e+00 1537.00
IUUC-Dse-031544 Dothistroma septosporum 28.14 5.00e-46 180.00
IUUC-Dme-031830 Drosophila melanogaster 38.13 4.00e-155 541.00
IUUC-Ete-033051 Echinops telfairi 93.02 1.00e-143 503.00
IUUC-Eca-033501 Equus caballus 97.10 0.00e+00 1680.00
IUUC-Eeu-034555 Erinaceus europaeus 90.24 0.00e+00 877.00
IUUC-Fca-035809 Felis catus 96.01 0.00e+00 1665.00
IUUC-Fal-037056 Ficedula albicollis 91.29 0.00e+00 1590.00
IUUC-Fox-037949 Fusarium oxysporum 27.48 4.00e-48 187.00
IUUC-Fso-038282 Fusarium solani 26.38 8.00e-45 176.00
IUUC-Gmo-038540 Gadus morhua 80.17 0.00e+00 1392.00
IUUC-Ggr-039733 Gaeumannomyces graminis 26.16 7.00e-55 209.00
IUUC-Gga-040446 Gallus gallus 91.17 0.00e+00 1587.00
IUUC-Gac-041462 Gasterosteus aculeatus 81.74 0.00e+00 1410.00
IUUC-Gma-043148 Glycine max 37.33 3.00e-163 569.00
IUUC-Hsa-047030 Homo sapiens 97.34 0.00e+00 1686.00
IUUC-Hvu-047693 Hordeum vulgare 36.08 1.00e-149 523.00
IUUC-Itr-048318 Ictidomys tridecemlineatus 97.79 0.00e+00 1663.00
IUUC-Kpa-049224 Komagataella pastoris 23.88 9.00e-56 212.00
IUUC-Lch-049444 Latimeria chalumnae 80.97 0.00e+00 1383.00
IUUC-Lpe-050942 Leersia perrieri 34.06 7.00e-129 455.00
IUUC-Loc-052260 Lepisosteus oculatus 80.56 0.00e+00 1422.00
IUUC-Lma-053173 Leptosphaeria maculans 26.97 2.00e-49 191.00
IUUC-Laf-054185 Loxodonta africana 97.10 0.00e+00 1678.00
IUUC-Mcc-054816 Macaca mulatta 97.34 0.00e+00 1685.00
IUUC-Meu-056483 Macropus eugenii 72.71 0.00e+00 652.00
IUUC-Mor-056979 Magnaporthe oryzae 27.21 2.00e-52 201.00
IUUC-Mpo-057312 Magnaporthe poae 28.96 1.00e-51 199.00
IUUC-Mtr-057630 Medicago truncatula 35.85 3.00e-160 559.00
IUUC-Mla-058930 Melampsora laricipopulina 30.94 1.00e-24 106.00
IUUC-Mga-059942 Meleagris gallopavo 90.82 0.00e+00 1575.00
IUUC-Mvi-060386 Microbotryum violaceum 35.81 1.00e-157 551.00
IUUC-Mmr-060640 Microcebus murinus 97.82 0.00e+00 1689.00
IUUC-Mdo-062934 Monodelphis domestica 84.99 0.00e+00 1426.00
IUUC-Mac-064975 Musa acuminata 37.07 8.00e-157 547.00
IUUC-Mpu-065777 Mustela putorius furo 96.86 0.00e+00 1679.00
IUUC-Mlu-068052 Myotis lucifugus 95.66 0.00e+00 1660.00
IUUC-Nfi-068436 Neosartorya fischeri 28.71 3.00e-59 224.00
IUUC-Ncr-068840 Neurospora crassa 28.95 3.00e-58 221.00
IUUC-Nle-070063 Nomascus leucogenys 96.98 0.00e+00 1675.00
IUUC-Opr-070385 Ochotona princeps 86.58 0.00e+00 1446.00
IUUC-Ont-072367 Oreochromis niloticus 81.16 0.00e+00 1399.00
IUUC-Oan-073085 Ornithorhynchus anatinus 90.70 0.00e+00 1572.00
IUUC-Ocu-074672 Oryctolagus cuniculus 97.22 0.00e+00 1677.00
IUUC-Oba-075574 Oryza barthii 36.55 1.00e-153 537.00
IUUC-Obr-076203 Oryza brachyantha 36.68 2.00e-153 536.00
IUUC-Ogl-077909 Oryza glaberrima 36.55 1.00e-153 537.00
IUUC-Ogu-078053 Oryza glumaepatula 36.14 7.00e-151 528.00
IUUC-Oin-079700 Oryza indica 36.55 1.00e-153 537.00
IUUC-Olo-080707 Oryza longistaminata 37.19 3.00e-160 558.00
IUUC-Oni-082754 Oryza nivara 36.48 6.00e-153 535.00
IUUC-Opu-083854 Oryza punctata 36.48 4.00e-153 535.00
IUUC-Oru-085071 Oryza rufipogon 36.25 6.00e-152 531.00
IUUC-Osa-085370 Oryza sativa 36.55 1.00e-153 537.00
IUUC-Ola-086362 Oryzias latipes 79.54 0.00e+00 1369.00
IUUC-Oga-088078 Otolemur garnettii 96.83 0.00e+00 1663.00
IUUC-Oar-089679 Ovis aries 96.49 0.00e+00 1674.00
IUUC-Ptr-091680 Pan troglodytes 97.34 0.00e+00 1686.00
IUUC-Pan-092816 Papio anubis 97.98 0.00e+00 1204.00
IUUC-Psi-093890 Pelodiscus sinensis 91.29 0.00e+00 1593.00
IUUC-Pma-094654 Petromyzon marinus 64.90 0.00e+00 1119.00
IUUC-Pno-095071 Phaeosphaeria nodorum 27.88 5.00e-57 216.00
IUUC-Ppa-095198 Physcomitrella patens 34.28 2.00e-145 509.00
IUUC-Pfo-097465 Poecilia formosa 79.69 0.00e+00 1381.00
IUUC-Pab-098686 Pongo abelii 97.22 0.00e+00 1684.00
IUUC-Pop-100066 Populus trichocarpa 36.24 4.00e-161 562.00
IUUC-Pca-100990 Procavia capensis 86.46 0.00e+00 1457.00
IUUC-Ppe-101500 Prunus persica 37.23 3.00e-164 572.00
IUUC-Pva-102809 Pteropus vampyrus 96.13 0.00e+00 1670.00
IUUC-Pgr-103404 Puccinia graminis 33.30 7.00e-144 505.00
IUUC-Ptt-103952 Puccinia triticina 31.74 7.00e-133 468.00
IUUC-Pte-104216 Pyrenophora teres 28.10 6.00e-57 216.00
IUUC-Rno-105949 Rattus norvegicus 99.05 0.00e+00 1514.00
IUUC-Sce-106462 Saccharomyces cerevisiae 24.72 8.00e-57 216.00
IUUC-Sha-106689 Sarcophilus harrisii 92.50 0.00e+00 1619.00
IUUC-Sja-107696 Schizosaccharomyces japonicus 30.15 2.00e-96 347.00
IUUC-Spo-108173 Schizosaccharomyces pombe 29.69 1.00e-105 377.00
IUUC-Smo-109505 Selaginella moellendorffii 37.23 1.00e-150 527.00
IUUC-Sit-110176 Setaria italica 36.38 1.00e-158 554.00
IUUC-Sly-111671 Solanum lycopersicum 35.05 6.00e-162 565.00
IUUC-Sar-113073 Sorex araneus 82.56 0.00e+00 1286.00
IUUC-Sbi-114139 Sorghum bicolor 36.96 3.00e-152 532.00
IUUC-Sre-115158 Sporisorium reilianum 36.45 9.00e-168 584.00
IUUC-Ssc-115894 Sus scrofa 94.68 0.00e+00 1642.00
IUUC-Tgu-117481 Taeniopygia guttata 91.05 0.00e+00 1591.00
IUUC-Tru-118468 Takifugu rubripes 79.61 0.00e+00 1382.00
IUUC-Tni-120478 Tetraodon nigroviridis 79.37 0.00e+00 1372.00
IUUC-Tca-121780 Theobroma cacao 36.31 7.00e-161 561.00
IUUC-Tre-121900 Trichoderma reesei 27.78 9.00e-55 209.00
IUUC-Tvi-122343 Trichoderma virens 27.20 2.00e-55 211.00
IUUC-Tae-123578 Triticum aestivum 36.50 8.00e-152 531.00
IUUC-Tur-126430 Triticum urartu 35.71 3.00e-143 502.00
IUUC-Tme-127007 Tuber melanosporum 28.77 1.00e-60 228.00
IUUC-Tbe-128073 Tupaia belangeri 88.27 0.00e+00 1500.00
IUUC-Ttr-128879 Tursiops truncatus 95.89 0.00e+00 1652.00
IUUC-Uma-129356 Ustilago maydis 35.67 6.00e-169 588.00
IUUC-Vda-129676 Verticillium dahliae 28.76 1.00e-53 206.00
IUUC-Vvi-131744 Vitis vinifera 35.91 2.00e-159 556.00
IUUC-Xtr-132093 Xenopus tropicalis 80.29 0.00e+00 1395.00
IUUC-Xma-133199 Xiphophorus maculatus 80.53 0.00e+00 1380.00
IUUC-Yli-134385 Yarrowia lipolytica 26.67 2.00e-74 274.00
IUUC-Zma-135567 Zea mays 36.70 8.00e-150 524.00
Created Date 25-Jun-2017

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