DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome RNF43 3'UTR 071914feca BA091770 NM_017763 chr17:53786037-53786406:- RNF43 3'UTR 1b3692bad8 BA091771 NM_017763 chr17:53786036-53786597:- RNF43 3'UTR 97f3efbf64 BA091772 NM_017763 chr17:53784860-53786445:- RNF43 3'UTR b94a2dd71a BA091773 NM_017763 chr17:53786037-53790536:- RNF43 3'UTR 223374614f BA091774 NM_017763 chr17:53786832-53787134:- RNF43 3'UTR 848d4ccdf6 BA091775 NM_017763 chr17:53789343-53790538:- RNF43 3'UTR 626d6ad4d7 BA091776 NM_017763 chr17:53786832-53787281:- RNF43 3'UTR fcadf44413 BA091777 NM_017763 chr17:53789343-53790971:- RNF43 5'UTR 071914feca CA144128 NM_017763 chr17:53803347-53849930:- RNF43 5'UTR 1b3692bad8 CA144129 NM_017763 chr17:53795705-53849942:- RNF43 5'UTR 97f3efbf64 CA144130 NM_017763 chr17:53790420-53849891:- RNF43 5'UTR b94a2dd71a CA144131 NM_017763 chr17:53848953-53849893:- RNF43 5'UTR 223374614f CA144132 NM_017763 chr17:53794964-53835081:- RNF43 5'UTR 848d4ccdf6 CA144133 NM_017763 chr17:53849561-53849891:- RNF43 5'UTR 626d6ad4d7 CA144134 NM_017763 chr17:53795716-53848001:- RNF43 5'UTR fcadf44413 CA144135 NM_017763 chr17:53803373-53835081:-

DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence RNF43 ATTTA 489-2840 4026-4030;4079-4083;4095-4099;4194-4198;4659-4663 RNF43 WTATTTATW 489-2840 4077-4085 RNF43 WWATTTAWW 489-2840 4077-4085 RNF43 WWTATTTATWW 489-2840 4076-4086 RNF43 WWWATTTAWWW 489-2840 4076-4086

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand hsa_circ_0044775 chr17 56434828 56436184 - hsa_circ_0044776 chr17 56439904 56440961 - hsa_circ_0044777 chr17 56492686 56493120 -

DNA & RNA Element - circRNADb circRNA ID Chrom Start End Strand Samples hsa_circ_15494 chr17 56439904 56440961 - normal brain tissue hsa_circ_16637 chr17 56434828 56448394 - normal brain tissue

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-RNF43.1 NM_017763Tchr17:56434828-56436184 expressed RNF43 54894 protein-coding - hsa_circ_0044775 hsa-circ-RNF43.10 NM_001305545Tchr17:56437509-56440961 expressed RNF43 54894 protein-coding x chr17:56437509-56440961_PA1_RNaseR hsa-circ-RNF43.2 NM_001305544Tchr17:56492686-56493120 expressed RNF43 54894 protein-coding - hsa_circ_0044777 hsa-circ-RNF43.3 NM_001305544Tchr17:56439904-56440961 expressed RNF43 54894 protein-coding - hsa_circ_0044776

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT019206 hsa-miR-335-5p Homo sapiens RNF43 54894 Homo sapiens Microarray Functional MTI (Weak) 18185580

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0002891 hsa-miR-18a* 54894 RNF43 ggUCUUCCUCGUGAA-UCCCGUCa ||: |||: :|| ||||||| gaAGGCUGAGUUUUUGAGGGCAGa 2 22 285 308 [hg19:17:56431996-56432019:-] 0.5698 160 7 -22.45 -0.5153 MIMAT0004499 hsa-miR-26a-1* 54894 RNF43 gcacguuCAUUGGUUCUUAUCc | :| :|||||||| ggggguuGAGAAUAAGAAUAGu 2 16 653 674 [hg19:17:56431630-56431651:-] 0.5460 151 7 -11.66 -0.5382 MIMAT0004508 hsa-miR-92a-2* 54894 RNF43 caUUACGU-UGUUUAGGGGUGGg |:|| : | |:: ||||||| aaAGUGGGCAGAGGACCCCACCu 2 21 1107 1129 [hg19:17:56431175-56431197:-] 0.6094 151 7 -24.55 -0.2026 MIMAT0004509 hsa-miR-93* 54894 RNF43 gcccuUCACGAUCGAGUCGUCa |||| :|:||||||| cagccAGUG--GGUUCAGCAGa 2 18 400 419 [hg19:17:56431885-56431904:-] 0.5950 154 7 -19.30 -0.4372 MIMAT0004514 hsa-miR-29b-1* 54894 RNF43 agAUUUGGUGGUAUACUU-UGGUCg |:::: | | | |||| ||||| cuUGGGUGAGC-UCUGAACACCAGc 2 23 446 469 [hg19:17:56431835-56431858:-] 0.5754 120 0 -16.35 -0.2328 MIMAT0004566 hsa-miR-218-2* 54894 RNF43 gcgcCACGAACUGUCUUG-GUAc | |:| :|||||| ||| caguGGGUUCAGCAGAACGCAUg 2 19 404 426 [hg19:17:56431878-56431900:-] 0.5950 122 0 -23.98 -0.1563 MIMAT0004570 hsa-miR-223* 54894 RNF43 uugagucgaacagUUUAUGUgc ||||||| cuaucucuacuaaAAAUACAaa 3 10 82 103 [hg19:17:56434424-56434445:-] 0.5100 125 0 -10.69 -0.1204 MIMAT0004593 hsa-miR-130a* 54894 RNF43 cgUCUGUCAUCGUG------UUACACUu ||:|| || | | ||||||| ucAGGCAUUAUCCCAUUUGGAAUGUGAa 2 21 1070 1097 [hg19:17:56431207-56431234:-] 0.6094 143 7 -16.64 -0.2330 MIMAT0004596 hsa-miR-138-2* 54894 RNF43 uugggaccACAGCACUUUAUcg |||: |||||| aggcacuaUGUUAAGAAAUAua 3 15 1218 1239 [hg19:17:56431065-56431086:-] 0.7201 130 0 -6.28 -0.4238 MIMAT0004612 hsa-miR-186* 54894 RNF43 ggguuuuuuaagUGGAAACCCg | ||||||| ------ucccagAACUUUGGGa 2 11 1 16 [hg19:17:56434511-56434526:-] 0.5063 142 7 -19.46 -0.2225 MIMAT0004681 hsa-miR-26a-2* 54894 RNF43 cuuuGUUCAUUAGUUCUUAUCc ::|| ||| |||||||| ggguUGAG-AAU-AAGAAUAGu 2 19 655 674 [hg19:17:56431630-56431649:-] 0.5460 154 7 -10.86 -0.5382 MIMAT0004682 hsa-miR-361-3p 54894 RNF43 uuUAGUCUUAGU---GUGGACCCCCu | ||| |:: | :||||||| acAGCAGCCUUGGUUCCUCUGGGGGu 2 22 633 658 [hg19:17:56431646-56431671:-] 0.4055 144 7 -21.82 -0.1777 MIMAT0000705 hsa-miR-362-5p 54894 RNF43 ugaguguGGAUCCAAGGUUCCUAa |:||| ||||||| guuuuguCUUAG--AGCAAGGAUg 2 18 842 863 [hg19:17:56431441-56431462:-] 0.5569 142 7 -13.62 -0.2422 MIMAT0000716 hsa-miR-302c* 54894 RNF43 gucGUCCAUGGGGGUACAAUUu |||| | |:||||||| aauCAGG---CACUAUGUUAAg 2 20 1214 1232 [hg19:17:56431072-56431090:-] 0.7201 151 7 -17.03 -0.9386 MIMAT0000723 hsa-miR-371-3p 54894 RNF43 ugugaguuUUCUACCG-CCGUGAa | |:|||| |||||| agccggguAUGGUGGCGGGCACUu 2 16 108 131 [hg19:17:56434396-56434419:-] 0.5100 127 6 -25.36 -0.6320 MIMAT0004699 hsa-miR-148b* 54894 RNF43 cggacucacauauuGUCUUGAa ||||||| -----------uccCAGAACUu 2 9 1 11 [hg19:17:56434516-56434526:-] 0.5063 140 7 -9.72 -0.1439 MIMAT0000771 hsa-miR-325 54894 RNF43 ugugaaUGACCUGUGGAUGAUcc || |: :|||||| ggugaaACCCUAUCUCUACUAaa 3 18 73 95 [hg19:17:56434432-56434454:-] 0.5100 125 0 -6.32 -0.1228 MIMAT0004748 hsa-miR-423-5p 54894 RNF43 uuucagaGCGAGAGACGGGGAGu | ||||: ||||||| gccugacCACUCUUGGCCCCUCa 2 17 1050 1072 [hg19:17:56431232-56431254:-] 0.6094 160 7 -25.20 -0.2004 MIMAT0004748 hsa-miR-423-5p 54894 RNF43 uuucagagCGAGAGACGGGGAGu ||| |: ||||||| gaacaccaGCU-UUGGCCCCUCc 2 16 460 481 [hg19:17:56431823-56431844:-] 0.5754 149 7 -21.65 -0.1746 MIMAT0004751 hsa-miR-18b* 54894 RNF43 cgguCUUCC--C-CGUAAA-UCCCGu ||||| | |: ||| ||||| ccuuGAAGGCUGAGUUUUUGAGGGCa 2 19 281 306 [hg19:17:56431998-56432023:-] 0.5698 120 0 -19.15 -0.7002 MIMAT0002804 hsa-miR-488* 54894 RNF43 aacucucaCGGUAAUAGACCc | | |||||||| uucugcugGACUUUAUCUGGg 2 14 742 762 [hg19:17:56431542-56431562:-] 0.5832 149 7 -16.14 -0.2082 MIMAT0004764 hsa-miR-490-5p 54894 RNF43 ugggugGACCUCUAGGUACc | | | ||||||| gcagugCAGCAAAUCCAUGu 2 15 215 234 [hg19:17:56432070-56432089:-] 0.5880 146 7 -10.65 -0.4037 MIMAT0002812 hsa-miR-492 54894 RNF43 uucUUAGAACAGGGCGUC-CAGGa :||:| | :| ||| |||| gaaGAUUUCCUGUCUCAGAGUCCc 2 21 697 720 [hg19:17:56431584-56431607:-] 0.5646 120 0 -18.67 -0.2287 MIMAT0002822 hsa-miR-512-5p 54894 RNF43 cuuucACGGGAGUUCCGACUCAc | ||:| |||||||||| cuggaUCCCUUGAAGGCUGAGUu 2 19 274 296 [hg19:17:56432008-56432030:-] 0.5618 170 7 -25.71 -0.2809 MIMAT0002824 hsa-miR-498 54894 RNF43 cuuuuugcgggggacCGAACUUu ||||||| cugaaccagacagacGCUUGAAu 2 9 1194 1216 [hg19:17:56431088-56431110:-] 0.7201 140 7 -10.72 -0.5307 MIMAT0002827 hsa-miR-515-3p 54894 RNF43 uuGCGAGGUUUUCUUCCGUGAg ||||: :|| ||||||| gaCGCUU--GAAUCAGGCACUa 2 21 1206 1225 [hg19:17:56431079-56431098:-] 0.7201 153 7 -21.21 -0.8968 MIMAT0002829 hsa-miR-519e 54894 RNF43 uugUGAGAUUUUCCUCCGUGAa || || :|| ||||||| cagACGCUUGAAUCAGGCACUa 2 20 1204 1225 [hg19:17:56431079-56431100:-] 0.7201 159 7 -18.04 -0.8968 MIMAT0002830 hsa-miR-520f 54894 RNF43 uugggagauuuucCUUCGUGAa |||||||| gccguacuuccuaGAAGCACUg 2 10 114 135 [hg19:17:56432169-56432190:-] 0.6362 145 7 -15.33 -0.2030 MIMAT0002838 hsa-miR-525-5p 54894 RNF43 ucUUUC-ACGUAGGGA-GACCUc ||:| | ||::|| ||||| gaAAGGAGGAAUUUCUGCUGGAc 2 20 730 752 [hg19:17:56431552-56431574:-] 0.5832 122 0 -18.48 -0.4941 MIMAT0002847 hsa-miR-518c* 54894 RNF43 gucUUUCACGAAGGG-AG-GUCUCu :||| :||||: || ||||| cuuGAAG-AUUUCCUGUCUCAGAGu 2 21 694 717 [hg19:17:56431587-56431610:-] 0.5646 121 0 -17.72 -0.1973 MIMAT0002859 hsa-miR-516b 54894 RNF43 uuucACGAAGAAUGGAGGUCUa |||| | | ||||||| uuccUGCUCC--AGCUCCAGAc 2 19 175 194 [hg19:17:56432110-56432129:-] 0.6318 151 7 -14.25 -0.1422 MIMAT0002859 hsa-miR-516b 54894 RNF43 uuucacgaagaaugGAGGUCUa ||||||| caaccaagagugugCUCCAGAu 2 9 19 40 [hg19:17:56432264-56432285:-] 0.6362 140 7 -18.74 -0.3421 MIMAT0002861 hsa-miR-518e 54894 RNF43 gugAGACUU-CCCU-UC-GCGAAa |||||| || || ||||| auaUCUGAACCAGACAGACGCUUg 2 19 1190 1213 [hg19:17:56431091-56431114:-] 0.7201 120 0 -13.83 -1.0601 MIMAT0002873 hsa-miR-502-5p 54894 RNF43 aucguGGGUCUAUCGUUCCUa |::|| |||||||| uuuguCUUAG--AGCAAGGAu 2 17 844 862 [hg19:17:56431442-56431460:-] 0.5569 149 7 -17.81 -0.4310 MIMAT0004779 hsa-miR-509-5p 54894 RNF43 acuaacggugacAGACGUCAu |||||||| cugcagaaaacaUCUGCAGUg 2 10 200 220 [hg19:17:56432084-56432104:-] 0.6141 145 7 -15.81 -0.3792 MIMAT0004785 hsa-miR-545* 54894 RNF43 aguAGAUUAUUUGUAAAU-GACu |||: |::|| |||| ||| auuUCUGCUGGAC-UUUAUCUGg 2 20 740 761 [hg19:17:56431543-56431564:-] 0.5832 125 0 -12.74 -0.1260 MIMAT0003165 hsa-miR-545 54894 RNF43 cguguguUAUUUACAAACGAcu ||| | |||||| aagaaauAUAUUUAUUUGCUaa 3 16 1230 1251 [hg19:17:56431053-56431074:-] 0.7121 131 0 -6.58 -0.5871 MIMAT0003242 hsa-miR-577 54894 RNF43 guccAUGGUUAUA-AAAUAGau |:|:||||| |||||| uauuUGCUAAUAUAUUUAUCca 3 18 1242 1263 [hg19:17:56431041-56431062:-] 0.7121 148 0 -10.92 -0.3167 MIMAT0003242 hsa-miR-577 54894 RNF43 guccaUGGUUAUAAA-AUAGAu |: ::||||| ||||| cccacAUGGGUAUUUAUAUCUg 2 17 1175 1196 [hg19:17:56431108-56431129:-] 0.7201 124 0 -9.76 -0.7312 MIMAT0003254 hsa-miR-548b-3p 54894 RNF43 ugUUUUCGUUGACUC-CAAGAAc :::: |||| || |||||| gcGGGGACAACAAAGAGUUCUUc 2 21 809 831 [hg19:17:56431473-56431495:-] 0.5569 124 6 -16.54 -0.2594 MIMAT0004800 hsa-miR-550 54894 RNF43 cccgagaaugagggAGUCCGUGa |||||||| gacagacgcuugaaUCAGGCACu 2 10 1202 1224 [hg19:17:56431080-56431102:-] 0.7201 145 7 -20.40 -0.9999 MIMAT0003271 hsa-miR-603 54894 RNF43 cgUUUUCAU-UAACGUC-ACACAc ||:|||: : | ||| ||||| ccAAGAGUGUGCUCCAGAUGUGUu 2 21 22 45 [hg19:17:56432259-56432282:-] 0.6362 127 0 -17.53 -0.1404 MIMAT0003273 hsa-miR-605 54894 RNF43 uccucuUCCGUG---GUACCC-UAAAu |||:|| |||||| |||| gcaccuAGGUACCCACAUGGGUAUUUa 2 18 1164 1190 [hg19:17:56431114-56431140:-] 0.7201 128 0 -21.05 -0.5844 MIMAT0004804 hsa-miR-615-5p 54894 RNF43 cuagGCUCGUGGCCCCUGGGGg :|:||| | ||||||| aaagUGGGCA--GAGGACCCCa 2 19 1107 1126 [hg19:17:56431178-56431197:-] 0.6094 151 7 -24.07 -0.3159 MIMAT0004807 hsa-miR-624 54894 RNF43 uccauuauGGUUAUGGAACAc |||: ||||||| cuccagcuCCAG-ACCUUGUc 2 14 181 200 [hg19:17:56432104-56432123:-] 0.6259 147 7 -13.87 -0.1927 MIMAT0004811 hsa-miR-33b* 54894 RNF43 cccgacgugacggcUCCGUGAc ||||||| cagacgcuugaaucAGGCACUa 2 9 1204 1225 [hg19:17:56431079-56431100:-] 0.7201 140 7 -15.59 -0.8934 MIMAT0003302 hsa-miR-632 54894 RNF43 aggGUGUCCUUCGUCUGUg :|: ||| |||||| uuaUAUCUGAACCAGACAg 2 17 1188 1206 [hg19:17:56431098-56431116:-] 0.7201 124 6 -11.87 -0.1002 MIMAT0003302 hsa-miR-632 54894 RNF43 agGGUGUCCUUCGU-CUGUg | :||| | ||| |||| uuCAGCAGAACGCAUGACAc 2 18 411 430 [hg19:17:56431874-56431893:-] 0.5950 121 0 -16.23 -0.2186 MIMAT0003312 hsa-miR-642 54894 RNF43 guUCUGUGUAAACCUCUC-CCUg :||| || |||||| ||| agGGACCCA-CAGGAGAGUGGAu 2 21 954 975 [hg19:17:56431329-56431350:-] 0.6094 122 0 -21.58 -0.2434 MIMAT0003313 hsa-miR-643 54894 RNF43 gaUGGACUCGA-UCGUAUGUUca |:|| || | |||||| cuAUCUCUACUAAAAAUACAAaa 3 21 82 104 [hg19:17:56434423-56434445:-] 0.5100 127 0 -11.48 -0.1213 MIMAT0003332 hsa-miR-656 54894 RNF43 ucuccaacugacauAUUAUAa |||||| auauauuuauuugcUAAUAUa 2 8 1235 1255 [hg19:17:56431049-56431069:-] 0.7121 120 6 -2.82 -0.1378 MIMAT0003338 hsa-miR-660 54894 RNF43 guUGAGGCUAUACGU-UACCCAu || : |:|| || |||||| gcACCUAGGUACCCACAUGGGUa 2 21 1164 1186 [hg19:17:56431118-56431140:-] 0.7201 124 6 -16.94 -1.0444 MIMAT0003338 hsa-miR-660 54894 RNF43 guugAGGCUAUACG-UUAC-CCAu |::|: |||: |||| ||| cccaUUUGGAAUGUGAAUGUGGUg 2 19 1081 1104 [hg19:17:56431200-56431223:-] 0.6094 121 0 -15.46 -0.3001 MIMAT0005794 hsa-miR-1296 54894 RNF43 ccUCUACCUCGGUCCCGGGAUu |||| | |:: |||||||| ccAGAU-GUGUUUGGGCCCUAc 2 21 35 55 [hg19:17:56432249-56432269:-] 0.6362 162 7 -23.49 -0.1833 MIMAT0005795 hsa-miR-1323 54894 RNF43 ucUUUUACGGGGAG-------UCAAAACu |:|:| |::||| ||||||| aaAGAGUUCUUCUCUGGGAAAAGUUUUGu 2 21 820 848 [hg19:17:56431456-56431484:-] 0.5569 143 7 -15.16 -0.3902 MIMAT0013771 hsa-miR-449c* 54894 RNF43 ugUCUCUCCUCACGUUGAUCGUu || || :| | :||||||| ucAGUUAGUGGGGAGACUAGCAc 2 22 1145 1167 [hg19:17:56431137-56431159:-] 0.6648 157 7 -20.32 -0.1135 MIMAT0003945 hsa-miR-765 54894 RNF43 guaguggaaggaaGAGGAGGu ||||||| ggggagggaaaaaCUCCUCCu 2 9 675 695 [hg19:17:56431609-56431629:-] 0.5460 140 7 -14.27 -0.5960 MIMAT0004918 hsa-miR-892b 54894 RNF43 agaugggucUUUCCUCGGUCAc | | ||||||| cucauguucAUACCAGCCAGUg 2 14 387 408 [hg19:17:56431896-56431917:-] 0.5950 141 7 -17.92 -0.1156 MIMAT0004950 hsa-miR-877* 54894 RNF43 gacCCUCCUCCCUCUUCUCCu | || | | ||||||| cuaGAAGCACUG-GAAGAGGa 2 19 124 143 [hg19:17:56432161-56432180:-] 0.6362 144 7 -14.59 -0.3483 MIMAT0004952 hsa-miR-665 54894 RNF43 ucCCCGGAGUCGGAGGACCa | |:| | | ||||||| caGAGUC-CUG-CUCCUGGg 2 19 62 79 [hg19:17:56432225-56432242:-] 0.6362 142 7 -16.93 -0.2547 MIMAT0004956 hsa-miR-374b* 54894 RNF43 uuaCUAUUAUGU---UGGACGAUUc || ||||:| |::|||||| uaaGA-AAUAUAUUUAUUUGCUAAu 2 20 1229 1252 [hg19:17:56431052-56431075:-] 0.7121 140 6 -10.87 -0.4363 MIMAT0004972 hsa-miR-922 54894 RNF43 cugcaucaggaUAAGAGACGACg | |:||||||| uagaaaggaggAAUUUCUGCUGg 2 13 728 750 [hg19:17:56431554-56431576:-] 0.5832 148 7 -14.11 -0.4365 MIMAT0004975 hsa-miR-509-3-5p 54894 RNF43 guacuaacggUGCAGACGUCAu || |||||||| ucugcagaaaACAUCUGCAGUg 2 13 199 220 [hg19:17:56432084-56432105:-] 0.6141 152 7 -17.41 -0.3822 MIMAT0004982 hsa-miR-939 54894 RNF43 guggGGGUCUCGGAGUCGAGGGGu ||||||| | ||||||||| acagCCCAGAGGCCCAGCUCCCCa 2 21 912 935 [hg19:17:56431369-56431392:-] 0.6005 184 7 -41.69 -0.5609 MIMAT0004984 hsa-miR-941 54894 RNF43 cguguacacguguGUCGGCCCAc :|||||||| aaaauacaaaaauUAGCCGGGUa 2 11 94 116 [hg19:17:56434411-56434433:-] 0.5100 146 7 -19.32 -1.1570 MIMAT0005572 hsa-miR-1225-5p 54894 RNF43 ggggggugacccggCAUGGGUg ||||||| agacuagcaccuagGUACCCAc 2 9 1158 1179 [hg19:17:56431125-56431146:-] 0.6648 140 7 -22.40 -0.1671 MIMAT0005584 hsa-miR-1229 54894 RNF43 gacACC-CUCCCGUC-ACCACUCUc ||| || ||::| ||||||| gacUGGUGAUGGUGGAGGGUGAGAg 2 21 142 166 [hg19:17:56432138-56432162:-] 0.6362 158 7 -28.20 -0.1349 MIMAT0005586 hsa-miR-1231 54894 RNF43 cgucgACAGGC-GGGUCUGUg | ||:| ||||||| auuuaUAUCUGAACCAGACAg 2 16 1186 1206 [hg19:17:56431098-56431118:-] 0.7201 146 7 -16.12 -1.0704 MIMAT0005591 hsa-miR-1236 54894 RNF43 gaccUCUCUGUUCCCCUUCUCc ||| :| | ||||||| uccuAGAAGC-ACUGGAAGAGg 2 19 122 142 [hg19:17:56432162-56432182:-] 0.6362 148 7 -18.46 -0.2456 MIMAT0005863 hsa-miR-1200 54894 RNF43 cuccgAGUCUUACCGAGUCCUc || |: ||||||| uauaaUCCCAGCUACUCAGGAg 2 18 131 152 [hg19:17:56434375-56434396:-] 0.5107 141 7 -17.86 -0.1483 MIMAT0005864 hsa-miR-1201 54894 RNF43 agUCUCGUACAC-AAAUUAGUCCGa ||| || | || |||||||| ccAGA-CAGACGCUUGAAUCAGGCa 2 23 1199 1222 [hg19:17:56431082-56431105:-] 0.7201 155 7 -18.62 -1.1776 MIMAT0005877 hsa-miR-1286 54894 RNF43 ucccgaguagaacCAGGACGu ||||||| uaccuggcacagaGUCCUGCu 2 9 53 73 [hg19:17:56432231-56432251:-] 0.6362 140 7 -17.19 -0.1422 MIMAT0005898 hsa-miR-1246 54894 RNF43 ggACG--AGGUU-UUUAGGUAa ||| | ||: |||||||| ucUGCAGUGCAGCAAAUCCAUg 2 18 212 233 [hg19:17:56432071-56432092:-] 0.5880 151 7 -15.36 -0.3219 MIMAT0005904 hsa-miR-1253 54894 RNF43 acguccgacuagAAGAAGAGa |||||||| gacaacaaagagUUCUUCUCu 2 10 814 834 [hg19:17:56431470-56431490:-] 0.5569 145 7 -13.57 -0.2883 MIMAT0005913 hsa-miR-1261 54894 RNF43 uuCGGUU-UCGGAAUAGGUa ||:|| | :||||||| uuGCUAAUAUAUUUAUCCAc 2 18 1245 1264 [hg19:17:56431040-56431059:-] 0.7040 152 7 -13.28 -1.2224 MIMAT0005919 hsa-miR-548o 54894 RNF43 cguuuucauugacgUCAAAACc ||||||| ucuucucugggaaaAGUUUUGu 2 9 827 848 [hg19:17:56431456-56431477:-] 0.5569 140 7 -8.29 -0.3842 MIMAT0005920 hsa-miR-1266 54894 RNF43 ucgggacaagaugUCGGGACUCc ||||||||| aguagcauaggugAGCCCUGAGc 2 11 547 569 [hg19:17:56431735-56431757:-] 0.5357 150 7 -20.46 -0.1115 MIMAT0005934 hsa-miR-548p 54894 RNF43 uuUCAUUGACGUCAA-AAACGAu || || | :| || |||||| uaAG-AAAUAUAUUUAUUUGCUa 2 21 1229 1250 [hg19:17:56431054-56431075:-] 0.7121 122 6 -7.60 -1.3376 MIMAT0005789 hsa-miR-513c 54894 RNF43 uaUUUGCUGUGGAGGAAC-UCUu :|| || |||||||| ||| ggGAAAAACUCCUCCUUGAAGAu 2 21 680 702 [hg19:17:56431602-56431624:-] 0.5460 136 0 -19.65 -0.1632 MIMAT0005952 hsa-miR-1321 54894 RNF43 uaGUGUA--AGUGGAGGGAc ||| | |||||||||| gaCACCUUAUCACCUCCCUc 2 17 426 445 [hg19:17:56431859-56431878:-] 0.5852 159 7 -22.41 -0.4146 MIMAT0006765 hsa-miR-1825 54894 RNF43 ccucuccuccCGUGACCu ||||||| cuuccuagaaGCACUGGa 2 9 120 137 [hg19:17:56432167-56432184:-] 0.6362 140 7 -14.79 -0.8990 MIMAT0007884 hsa-miR-1910 54894 RNF43 uccgccGUCCGUGUCCUGACc | || | ||||||| gaagcaCUGGAAGAGGACUGg 2 16 127 147 [hg19:17:56432157-56432177:-] 0.6362 151 7 -21.52 -0.1563 MIMAT0009451 hsa-miR-1976 54894 RNF43 ugUCGUUCCUC-CCGUCCUCc || |:| | |||||||| ucAGGAGGCUGAGGCAGGAGa 2 19 146 166 [hg19:17:56434361-56434381:-] 0.5114 153 7 -25.04 -0.2897 MIMAT0011160 hsa-miR-2116 54894 RNF43 ucuggagGAUACGAUUCUUgg |||||:|||||| ucaggcaCUAUGUUAAGAAau 3 15 1216 1236 [hg19:17:56431068-56431088:-] 0.7201 146 0 -20.36 -0.1567 MIMAT0011778 hsa-miR-2278 54894 RNF43 ggUCCGUUGUGUGUGA-CGAGAg ||| ::|| || || ||||| ucAGG-GGCA-ACCCUGGCUCUa 2 21 499 519 [hg19:17:56431785-56431805:-] 0.5754 120 0 -19.08 -0.6107 MIMAT0014990 hsa-miR-3127 54894 RNF43 gaaggguaaggUGUUCGGGACUa :::|||||||| caguagcauagGUGAGCCCUGAg 2 13 546 568 [hg19:17:56431736-56431758:-] 0.5357 148 7 -17.06 -0.2583 MIMAT0014999 hsa-miR-378b 54894 RNF43 aaGACGGAGGUUCA-GGUCa |||:||| :||| |||| ucCUGUCUCAGAGUCCCAGa 2 18 704 723 [hg19:17:56431581-56431600:-] 0.5646 133 0 -22.11 -0.5649 MIMAT0015001 hsa-miR-3135 54894 RNF43 guGAC--GUCAGAGUC--GGA-UCCGu ||| || |||::| ||| |||| gcCUGACCACUCUUGGCCCCUCAGGCa 2 21 1050 1076 [hg19:17:56431228-56431254:-] 0.6094 122 0 -20.68 -0.3636 MIMAT0015016 hsa-miR-3145 54894 RNF43 guuaagguuUGUGAGU-UUUAUAga |:::| | |||||| ucaggcacuAUGUUAAGAAAUAUau 3 16 1216 1240 [hg19:17:56431064-56431088:-] 0.7201 126 0 -13.03 -0.1245 MIMAT0015022 hsa-miR-3149 54894 RNF43 uauguguguguauaggUAUGUUu |||||| ccuaucucuacuaaaaAUACAAa 2 8 81 103 [hg19:17:56434424-56434446:-] 0.5100 120 6 -6.50 -0.1399 MIMAT0015023 hsa-miR-3150 54894 RNF43 ggUUGGAGCUCC---UAGAGGGGUc |:|| |||| | ||||||| acAGCCCAGAGGCCCAGCUCCCCAg 2 21 912 936 [hg19:17:56431368-56431392:-] 0.6005 155 7 -34.20 -0.1761 MIMAT0015026 hsa-miR-3153 54894 RNF43 uuuaCAGGGAUGAGCGAAAGGGg ||||||: |||||||| agggGUCCCUG-AAGCUUUCCCa 2 20 579 600 [hg19:17:56431704-56431725:-] 0.4960 161 7 -30.32 -0.1843 MIMAT0015037 hsa-miR-3163 54894 RNF43 caGAAU-GACGGGAGUA-AAAUAu :||| :|||: :|| ||||| uaUUUAUUUGCUAAUAUAUUUAUc 2 21 1238 1261 [hg19:17:56431043-56431066:-] 0.7121 123 0 -8.05 -0.9406 MIMAT0015039 hsa-miR-3165 54894 RNF43 acuCCAGUGUA-ACGUAGGUGga | | |:|| | :|||||| uuuGCUAAUAUAUUUAUCCAC-- 3 20 1244 1264 [hg19:17:56431040-56431060:-] 0.7040 134 0 -11.98 -0.3455 MIMAT0015040 hsa-miR-3166 54894 RNF43 auccGGUC-A--UCCGUAACAGACGc |||| | || | |||||||| ugcuCCAGCUCCAGACCUUGUCUGCa 2 20 179 204 [hg19:17:56432100-56432125:-] 0.6259 157 7 -18.28 -0.6489 MIMAT0015048 hsa-miR-3173 54894 RNF43 accGGACGGAUAAAGGAGGAAa |:| :| | ||||||| cacCUUAUCACCUCCCUCCUUg 2 20 428 449 [hg19:17:56431855-56431876:-] 0.5852 147 7 -16.20 -0.1259 MIMAT0015048 hsa-miR-3173 54894 RNF43 accggacggauaaAGGAGGAAa |||||||| gggagggaaaaacUCCUCCUUg 2 10 676 697 [hg19:17:56431607-56431628:-] 0.5460 145 7 -16.14 -0.4543 MIMAT0015053 hsa-miR-3176 54894 RNF43 ggCCAUC-AGGG---UCCGGUCa |||:| |||| ||||||| ugGGUGGAUCCCUUGAGGCCAGg 2 18 25 47 [hg19:17:56434480-56434502:-] 0.5060 155 7 -27.47 -0.1167 MIMAT0015053 hsa-miR-3176 54894 RNF43 ggccaucaggGUCCGGUCa |||||||| auaagccauaCAGGCCAGg 2 10 938 956 [hg19:17:56431348-56431366:-] 0.6094 145 7 -18.03 -0.1254 MIMAT0015063 hsa-miR-3183 54894 RNF43 aggcucgCUGAGGCUCUCUCCg || ||| ||||||| ugucucaGAGUCCCAGAGAGGu 2 16 707 728 [hg19:17:56431576-56431597:-] 0.5832 159 7 -21.41 -0.3141 MIMAT0015064 hsa-miR-3184 54894 RNF43 uuUUCGAGCCAGACUCCGGGGAGu :| | | || |||||||| cuGAACACCAGCUUUGGCCCCUCc 2 23 458 481 [hg19:17:56431823-56431846:-] 0.5754 150 7 -20.51 -0.1763 MIMAT0015064 hsa-miR-3184 54894 RNF43 uuuucgagccAGACUCCGGGGAGu ||| |||||||| gccugaccacUCU-UGGCCCCUCa 2 15 1050 1072 [hg19:17:56431232-56431254:-] 0.6094 148 7 -22.75 -0.2023 MIMAT0015378 hsa-miR-3065-3p 54894 RNF43 gaGGU-UGUUAUAGGACCACGACu ||| ::: || ||||||| agCCAGGUGUUACAAAGGUGCUGc 2 22 324 347 [hg19:17:56431957-56431980:-] 0.5779 144 7 -18.35 -0.4659 MIMAT0015068 hsa-miR-3186-3p 54894 RNF43 guuucgguagagaGGCGCACu :|||||| ugaggcaggagaaUCGCGUGa 2 9 155 175 [hg19:17:56434352-56434372:-] 0.5114 124 6 -18.95 -0.1180 MIMAT0015070 hsa-miR-3188 54894 RNF43 ggggCAUA-GGCGU--GUUUCGGAGa || | || || | ||||||| cuugGUUUCCCUCACCCCAAGCCUCa 2 20 365 390 [hg19:17:56431914-56431939:-] 0.5864 149 7 -19.67 -0.2540 MIMAT0015072 hsa-miR-320e 54894 RNF43 ggaAGAGUUG-GGUCGAAa ||| ||| ||||||| agcUCUGAACACCAGCUUu 2 16 454 472 [hg19:17:56431832-56431850:-] 0.5754 158 7 -19.66 -0.2451 MIMAT0015087 hsa-miR-514b-5p 54894 RNF43 uacuaacgGAGGGAGAAC-UCUu ||||: |||| ||| gggaaaaaCUCCUCCUUGAAGAu 2 15 680 702 [hg19:17:56431602-56431624:-] 0.5460 122 0 -16.95 -0.1601 MIMAT0016847 hsa-miR-378c 54894 RNF43 ggugAGAAGACUGAGGUUCA-GGUCa |:| ||| ||| :||| |||| aagaUUUCCUGUCUCAGAGUCCCAGa 2 22 698 723 [hg19:17:56431581-56431606:-] 0.5646 137 0 -18.62 -0.5649 MIMAT0016848 hsa-miR-4293 54894 RNF43 gacaaGGAC--AGUCCGac |:|| |||||| agacgCUUGAAUCAGGCac 3 13 1205 1223 [hg19:17:56431081-56431099:-] 0.7201 123 0 -12.59 -0.1239 MIMAT0016850 hsa-miR-4301 54894 RNF43 agUGUUCACUUCAUCACCCu |:|| ||| ||||||| gaAUAA--GAA-UAGUGGGg 2 19 662 678 [hg19:17:56431626-56431642:-] 0.5460 149 7 -15.71 -0.4003 MIMAT0016850 hsa-miR-4301 54894 RNF43 aguguucACUUCAUCACCCu | |: ||||||| uuuucccUCAGUUAGUGGGg 2 14 1138 1157 [hg19:17:56431147-56431166:-] 0.6094 145 7 -14.07 -0.1045 MIMAT0016860 hsa-miR-4307 54894 RNF43 ccuuuGUCCUUUUUUGUAa | | |:||||||| cuuguCUGCAGAAAACAUc 2 15 195 213 [hg19:17:56432091-56432109:-] 0.6208 150 7 -6.83 -0.1512 MIMAT0016867 hsa-miR-4316 54894 RNF43 guGGUC-GAUCGGAGUGg | || ||:||||||| caCAAGUCUGGCCUCACu 2 16 981 998 [hg19:17:56431306-56431323:-] 0.6094 154 7 -22.94 -0.1886 MIMAT0016868 hsa-miR-4314 54894 RNF43 gacaggguaaAGGGUCUc ||||||| ----------UCCCAGAa 2 9 1 8 [hg19:17:56434519-56434526:-] 0.5067 140 7 -10.41 -0.2432 MIMAT0016868 hsa-miR-4314 54894 RNF43 gaCAGGGU-AAAGGGUCUc |||:|| ||||||| cuGUCUCAGAGUCCCAGAg 2 17 706 724 [hg19:17:56431580-56431598:-] 0.5832 151 7 -30.03 -0.1909 MIMAT0016869 hsa-miR-4318 54894 RNF43 ucguacauGGGUGUCAc :||||||| uuggccccUCCACAGUa 2 10 471 487 [hg19:17:56431817-56431833:-] 0.5754 141 7 -12.42 -0.5180 MIMAT0016879 hsa-miR-4258 54894 RNF43 gguuccGCCACCGCCCc :||||||||| cggguaUGGUGGCGGGc 2 12 111 127 [hg19:17:56434400-56434416:-] 0.5100 151 7 -25.10 -0.2130 MIMAT0016894 hsa-miR-4262 54894 RNF43 gucCAUCAGACUUACAg | | | ||||||| uuuGGAAUGUGAAUGUg 2 15 1085 1101 [hg19:17:56431203-56431219:-] 0.6094 146 7 -8.08 -0.1765 MIMAT0016915 hsa-miR-4284 54894 RNF43 uaccccacUACACUCGGg | ||||||| aguagcauAGGUGAGCCc 2 11 547 564 [hg19:17:56431740-56431757:-] 0.5357 142 7 -16.89 -0.1689 MIMAT0016916 hsa-miR-4286 54894 RNF43 ccauGGUC-CUCACCCCa :||| ||||||| ucccUCAGUUAGUGGGGa 2 14 1141 1158 [hg19:17:56431146-56431163:-] 0.6094 144 7 -17.71 -0.5195 MIMAT0016916 hsa-miR-4286 54894 RNF43 ccAUGGUCCUCACCCCa || | ||||||| aaUAAGAAUAGUGGGGa 2 16 663 679 [hg19:17:56431625-56431641:-] 0.5460 143 7 -13.43 -1.0247 MIMAT0016918 hsa-miR-4288 54894 RNF43 ccuuugagucGUCUGUu |||||| auaucugaacCAGACAg 2 8 1190 1206 [hg19:17:56431098-56431114:-] 0.7201 120 6 -9.89 -0.1012 MIMAT0016919 hsa-miR-4292 54894 RNF43 gguuccggccGGGUCCCc ||||||| ugacauucacCCCAGGGc 2 9 1031 1048 [hg19:17:56431256-56431273:-] 0.6094 140 7 -16.34 -0.1180 MIMAT0016923 hsa-miR-4329 54894 RNF43 cacCUUGAUCCCAGAGUCc || :| ||||||| gaaGAUUUCCUGUCUCAGa 2 17 697 715 [hg19:17:56431589-56431607:-] 0.5646 144 7 -10.59 -0.6662 MIMAT0016925 hsa-miR-500b 54894 RNF43 uggguccaUCGUUCCUAa ||||||||| ugucuuagAGCAAGGAUg 2 11 846 863 [hg19:17:56431441-56431458:-] 0.5569 150 7 -17.39 -0.2466 MIMAT0000068 hsa-miR-15a 54894 RNF43 guguuugguaaUACACGACGAu | |||||||| agguguuacaaAGGUGCUGCUc 2 12 328 349 [hg19:17:56431955-56431976:-] 0.5779 147 7 -15.22 -0.1216 MIMAT0000069 hsa-miR-16 54894 RNF43 gcGGUUAUAAAUG----CACGACGAu |||: |||| |||||||| agCCAGGUGUUACAAAGGUGCUGCUc 2 21 324 349 [hg19:17:56431955-56431980:-] 0.5779 151 7 -23.25 -0.1228 MIMAT0000072 hsa-miR-18a 54894 RNF43 gauAGACGUGAU-C-UAC-GUGGAAu || ||| | | ||| |||||| gguUCAGCAGAACGCAUGACACCUUa 2 21 409 434 [hg19:17:56431870-56431895:-] 0.5950 122 6 -14.50 -0.4087 MIMAT0000078 hsa-miR-23a 54894 RNF43 ccuuUAGGG--ACCGUUACACUa ||||| | | ||||||| cauuAUCCCAUUUGGAAUGUGAa 2 18 1075 1097 [hg19:17:56431207-56431229:-] 0.6094 156 7 -18.11 -0.2268 MIMAT0000256 hsa-miR-181a 54894 RNF43 ugaGUGGCUGUCGCAACUUACAa ||:: : | :| ||||||| uccCAUUUGGAAUG-UGAAUGUg 2 21 1080 1101 [hg19:17:56431203-56431224:-] 0.6094 146 7 -11.84 -0.1639 MIMAT0000257 hsa-miR-181b 54894 RNF43 ugGGUGGCUGUCGUUACUUACAa |||:: : | : :||||||| ucCCAUUUGGAAU-GUGAAUGUg 2 22 1080 1101 [hg19:17:56431203-56431224:-] 0.6094 147 7 -18.56 -0.1765 MIMAT0000258 hsa-miR-181c 54894 RNF43 ugaGU-GGCUGUCCAACUUACAa || ::|: | | ||||||| uccCAUUUGGAAUG-UGAAUGUg 2 20 1080 1101 [hg19:17:56431203-56431224:-] 0.6094 144 7 -11.24 -0.1655 MIMAT0000259 hsa-miR-182 54894 RNF43 ucacacucAAGAUGGUAACGGUUu ||| :: ||||||| cuaucauuUUCCUUUUUUGCCAAa 2 17 517 540 [hg19:17:56431764-56431787:-] 0.5754 148 7 -13.72 -0.9644 MIMAT0000266 hsa-miR-205 54894 RNF43 gucugaggCCACCUUACUUCCu | ||||||||||| agaggaagGAUGGAAUGAAGGu 2 15 764 785 [hg19:17:56431519-56431540:-] 0.5569 162 7 -24.86 -0.6320 MIMAT0000417 hsa-miR-15b 54894 RNF43 acauuugguacUACACGACGAu | |||||||| agguguuacaaAGGUGCUGCUc 2 12 328 349 [hg19:17:56431955-56431976:-] 0.5779 147 7 -17.22 -0.1204 MIMAT0000418 hsa-miR-23b 54894 RNF43 ccAUUAGGG--ACCGUUACACUa | ||||| | | ||||||| caUUAUCCCAUUUGGAAUGUGAa 2 20 1075 1097 [hg19:17:56431207-56431229:-] 0.6094 158 7 -18.11 -0.2268 MIMAT0000428 hsa-miR-135a 54894 RNF43 aguguauccUUAUUUUUCGGUAu |:| | ||||||| cagcuccccAGU-AUAAGCCAUa 2 15 926 947 [hg19:17:56431357-56431378:-] 0.6005 144 7 -11.42 -0.4175 MIMAT0000429 hsa-miR-137 54894 RNF43 gaugcgcAUAAGAAUUCGUUAUu || | ||||| |||| caggcacUA-UGUUAAGAAAUAu 2 17 1217 1238 [hg19:17:56431066-56431087:-] 0.7201 126 0 -7.83 -0.1251 MIMAT0000430 hsa-miR-138 54894 RNF43 gccggACU-AAGUGUUGUGGUCGa ||| || ||||||||| uugggUGAGCUCUGAACACCAGCu 2 19 447 470 [hg19:17:56431834-56431857:-] 0.5754 157 7 -22.99 -0.5002 MIMAT0000450 hsa-miR-149 54894 RNF43 ccCUCACUUCUGUGCCU-CGGUCu |:|||:| | : || ||||| guGGGUGGAUCCCUUGAGGCCAGg 2 22 24 47 [hg19:17:56434480-56434503:-] 0.5060 125 0 -21.76 -0.1748 MIMAT0000456 hsa-miR-186 54894 RNF43 ucGGGUU-UUCCUCUUAAGAAAc | ||: || | ||||||| acCACAGCAAACACCAUUCUUUu 2 21 90 112 [hg19:17:56432192-56432214:-] 0.6362 147 7 -8.27 -0.2005 MIMAT0000461 hsa-miR-195 54894 RNF43 cgguuauaaagaCACGACGAu |||||||| gguguuacaaagGUGCUGCUc 2 10 329 349 [hg19:17:56431955-56431975:-] 0.5779 145 7 -14.09 -0.1228 MIMAT0000687 hsa-miR-299-3p 54894 RNF43 uucgccaaaugguaGGGUGUAu ||||||| cuagcaccuagguaCCCACAUg 2 9 1161 1182 [hg19:17:56431122-56431143:-] 0.6648 140 7 -18.12 -0.5432 MIMAT0000722 hsa-miR-370 54894 RNF43 ugguccaAGGUG-GGGUC-GUCCg ||||: :|||| |||| cagcaaaUCCAUGUCCAGCCAGGc 2 16 221 244 [hg19:17:56432060-56432083:-] 0.5880 122 0 -24.72 -0.1279 MIMAT0000732 hsa-miR-378 54894 RNF43 ggAAGACUGAGGUUCA-GGUCa | ||| ||| :||| |||| uuUCCUGUCUCAGAGUCCCAGa 2 20 702 723 [hg19:17:56431581-56431602:-] 0.5646 131 0 -17.91 -0.5649 MIMAT0004693 hsa-miR-330-5p 54894 RNF43 cgGAUUCUGUGUCCGGGUCUCu ||: || || ||||||| ucCUGUCUCAGAGUCCCAGAGa 2 21 704 725 [hg19:17:56431579-56431600:-] 0.5646 156 7 -27.69 -0.6325 MIMAT0000756 hsa-miR-326 54894 RNF43 gaccuccUUCCCGGGUCUCc |: | ||||||| cugucucAGAGUCCCAGAGa 2 14 706 725 [hg19:17:56431579-56431598:-] 0.5832 145 7 -15.56 -0.6756 MIMAT0000758 hsa-miR-135b 54894 RNF43 aguguauccUUACUUUUCGGUAu |:| | ||||||| cagcuccccAGU-AUAAGCCAUa 2 15 926 947 [hg19:17:56431357-56431378:-] 0.6005 144 7 -11.50 -0.4175 MIMAT0001339 hsa-miR-422a 54894 RNF43 cgGAAGACUGGGAUUCA-GGUCa :| ||| |:| :||| |||| auUUCCUGUCUCAGAGUCCCAGa 2 21 701 723 [hg19:17:56431581-56431603:-] 0.5646 128 0 -17.50 -0.5685 MIMAT0001341 hsa-miR-424 54894 RNF43 aaguuuUGUACUUAACGACGAc ||| |: ||||||| gguguuACA-AAGGUGCUGCUc 2 17 329 349 [hg19:17:56431955-56431975:-] 0.5779 146 7 -12.17 -0.1204 MIMAT0001412 hsa-miR-18b 54894 RNF43 gaUUGACGUGAUCUAC-GUGGAAu |:| | || : ||| |||||| ucAGCAGAAC-GCAUGACACCUUa 2 22 412 434 [hg19:17:56431870-56431892:-] 0.5950 123 6 -15.63 -0.4087 MIMAT0002811 hsa-miR-202 54894 RNF43 aaGGGUAC---GGGAUA-UGGAGa | |||| ||:||| ||||| aaCGCAUGACACCUUAUCACCUCc 2 19 419 442 [hg19:17:56431862-56431885:-] 0.5852 125 0 -19.99 -0.3185 MIMAT0002820 hsa-miR-497 54894 RNF43 uguuugGUGUCACACGACGAc || || |||||||| guguuaCAAAG-GUGCUGCUc 2 16 330 349 [hg19:17:56431955-56431974:-] 0.5779 153 7 -17.38 -0.1216 MIMAT0002821 hsa-miR-181d 54894 RNF43 ugGGUGGCUGUUGUUACUUACAa |||:: : ||: :||||||| ucCCAUUUGGAAU-GUGAAUGUg 2 22 1080 1101 [hg19:17:56431203-56431224:-] 0.6094 155 7 -18.56 -0.1782 MIMAT0003164 hsa-miR-544 54894 RNF43 cuugaacgauuuuuACGUCUUa ||||||| cuccagaccuugucUGCAGAAa 2 9 187 208 [hg19:17:56432096-56432117:-] 0.6208 140 7 -11.89 -0.6080 MIMAT0003329 hsa-miR-411 54894 RNF43 gcaugcgauaugccAGAUGAu |||||| ggugaaacccuaucUCUACUa 2 8 73 93 [hg19:17:56434434-56434454:-] 0.5100 120 6 -10.96 -0.1687

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G048111 RNF43 Homo sapiens 54894 24466159

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End RNF43 1 1253 100 52.167 - chr17 56431050 56432303 RNF43 1254 1265 94.159 52.167 - chr17 56431038 56431050 RNF43 1266 1272 87.839 52.167 - chr17 56431031 56431038 RNF43 1273 2443 9.604 52.167 - chr17 56429860 56431031

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile RNF43 hsa-miR-520f beg:116 end:135 pic:3' TTGGGAGATTTTCCTTCGTGAA 5'& ||. ||| |||||||| &5' -ACTTCCTA----GAAGCACT- 3' RNF43 hsa-miR-1246 beg:215 end:233 pic:3' GGACGAGGTT-TTTAGGTAA 5'& |. ||. |||||||| &5' ---GTG-CAGCAAATCCAT- 3' RNF43 hsa-miR-624 beg:186 end:200 pic:3' TCCATTATGGTTATGGAACAC 5'& |||. ||||||| &5' --------CCAG-ACCTTGT- 3' RNF43 hsa-miR-3183 beg:711 end:729 pic:3' AGGCTCGCTGAGGCTCTCTCCG 5'& || ||| |||||||. &5' -------GAGTCCCAGAGAGGT 3' RNF43 hsa-miR-4300 beg:916 end:934 pic:3' CTTCATCAGGTCGAGGGT 5'& || .| ||||||||| &5' --AGAGGCCCAGCTCCC- 3' RNF43 hsa-miR-920 beg:917 end:935 pic:3' ATGACGAAGGTGTCGAGGGG 5'& | || ||||||||| &5' ----GAGGCC-CAGCTCCCC 3' RNF43 hsa-miR-18astar beg:1035 end:1051 pic:3' GGTCTTCCTCGTGAA-TCCCGTCA 5'& ||| ||||||| &5' ----------CACCCCAGGGCAG- 3' RNF43 hsa-miR-18astar beg:289 end:308 pic:3' GGTCTTCCTCGTGAA-TCCCGTCA 5'& |||. ||||||| &5' -------GAGTTTTTGAGGGCAG- 3' RNF43 hsa-miR-1224-3p beg:621 end:632 pic:3' GACTCCTCTCTCCTCCACCCC 5'& |||||||| &5' ------------GAGGTGGG- 3' RNF43 hsa-miR-4286 beg:1142 end:1158 pic:3' CCATGGTCC-TCACCCCA 5'& .||| ||||||| &5' ----TCAGTTAGTGGGG- 3' RNF43 hsa-miR-302cstar beg:1214 end:1233 pic:3' GTCGTCCATGGGGGTACAATTT 5'& |||| |.|||||||. &5' ---CAGGCA---CTATGTTAAG 3' RNF43 bkv-miR-B1-5p beg:693 end:716 pic:3' TACGAG-AAGGGTTCAGAGTCTA 5'& || ||.|| |||||||| &5' -TGAAGATTTCCT-GTCTCAGA- 3' RNF43 hsa-miR-500b beg:846 end:863 pic:3' TGGGTCCATCGTTCCTAA 5'& |..|| ||||||||| &5' -CTTAG--AGCAAGGAT- 3' RNF43 hiv1-miR-TAR-5p beg:708 end:727 pic:3' AGTCTAGACCAGATTGGTCTCTCT 5'& ||||| ||| ||||||||. &5' TCAGA----GTC---CCAGAGAGG 3' RNF43 hsv1-miR-H4star beg:234 end:247 pic:3' TGATCGCTCAATCTGTCCGTTC 5'& || ||||||| &5' -----------AGCCAGGCAA- 3' RNF43 hsa-miR-550 beg:1206 end:1225 pic:3' CCCGAGAATGAGGG-AGTCCGTGA 5'& .||. ||||||||| &5' --------GCTTGAATCAGGCACT 3' RNF43 hsa-miR-4318 beg:470 end:487 pic:3' TCGTACATGGGTGTCAC 5'& .|| .||||||| &5' GGCCCC--TCCACAGT- 3' RNF43 hsa-miR-1231 beg:1190 end:1206 pic:3' CGTCGACAGGCG-GGTCTGTG 5'& ||.| ||||||| &5' -------TCTGAACCAGACA- 3' RNF43 hsa-miR-320e beg:454 end:473 pic:3' GGAAGAGTTG-GGTCGAAA 5'& ||| ||| |||||||| &5' ---TCTGAACACCAGCTTT 3' RNF43 hcmv-miR-US4 beg:220 end:236 pic:3' TAGGGGGACGTGCAGGTACAGC 5'& ||| |||||||| &5' --------GCAAATCCATGTC- 3' RNF43 hsa-miR-326 beg:710 end:725 pic:3' GACCTCCTTCCC-GGGTCTCC 5'& || | ||||||| &5' --------AGAGTCCCAGAG- 3' RNF43 hsa-miR-92a-2star beg:1111 end:1130 pic:3' CATTACGTTGTTTAGGGGTGGG 5'& |||. .| |||||||. &5' -----GCAGAGGA-CCCCACCT 3' RNF43 hsa-miR-544b beg:1062 end:1075 pic:3' AATCTTTACGTGTTGGAGTCCA 5'& || | ||||||| &5' --------GC-C--CCTCAGG- 3' RNF43 hsa-miR-516b beg:176 end:194 pic:3' TTTCACGAAGAATGGAGGTCTA 5'& |||| | | ||||||| &5' ----TGCTCC--AGCTCCAGA- 3' RNF43 hsa-miR-516b beg:22 end:41 pic:3' TTTCACGAAGAATGGAGGTCTA 5'& |.||||. |||||||| &5' AGAGTGTG------CTCCAGAT 3' RNF43 hsa-miR-765 beg:685 end:695 pic:3' GTAGTGGAAGGAAGAGGAGGT 5'& ||||||| &5' -------------CTCCTCC- 3' RNF43 hsa-miR-509-5p beg:202 end:221 pic:3' ACTAACGG-TGACAGACGTCAT 5'& | || ||||||||. &5' -----GAAAACA-TCTGCAGTG 3' RNF43 ebv-miR-BART10star beg:610 end:631 pic:3' ACATGTCTTGGTTTCTCCACCG 5'& || | || ||||||| &5' -GTTCTGTCCCT--GAGGTGG- 3' RNF43 ebv-miR-BART11-3p beg:253 end:272 pic:3' CCGTCAGTCGGAC----CACACGCA 5'& ||||| |||||.| &5' --------GCCTGTGGCGTGTGTG- 3' RNF43 ebv-miR-BART12 beg:938 end:968 pic:3' TTGGTG----TGGTTTGT-GGTGTCCT 5'& |.|||. .|||.. | |||||||| &5' AGCCATACAGGCCAGGGACCCACAGGA 3' RNF43 ebv-miR-BART12 beg:86 end:107 pic:3' TTGGTGTGGTTTGTGGTGTCCT 5'& .|||||| |||||||||. &5' GACCACAGCAAACACCAT---- 3' RNF43 ebv-miR-BART2-3p beg:333 end:353 pic:3' AAATAAAAGAGGTTTA----GCGAGGAA 5'& |||| .||||||| &5' -----------CAAAGGTGCTGCTCCTT 3' RNF43 ebv-miR-BART4 beg:392 end:413 pic:3' TCGTGTGGTC-GTCGTAGTCCAG 5'& ||.||||| |||. .|||. &5' --CATACCAGCCAGT---GGGTT 3' RNF43 ebv-miR-BART5star beg:907 end:928 pic:3' TCCACTTGTCG-----CCGGGTG 5'& ||.||||| |||||| &5' ---TGGACAGCCCAGAGGCCCA- 3' RNF43 ebv-miR-BART5star beg:622 end:643 pic:3' TCCACT--TGTCGCCGGGTG 5'& |||||. ||||| |||. &5' AGGTGGGTACAGCAGCCT-- 3' RNF43 ebv-miR-BART6-3p beg:268 end:283 pic:3' AGATTCCGATCAGGCTAGGGGC 5'& .||||. ||||||. &5' ----GGGCTG----GATCCCT- 3' RNF43 ebv-miR-BART6-5p beg:624 end:642 pic:3' GGATACCTAACCTGGTTGGAAT 5'& .|||.| | ||.|||| &5' ---GTGGGTAC-AGCAGCCTT- 3' RNF43 ebv-miR-BART9 beg:314 end:336 pic:3' TGATGCCC-TGGGTACTTCACAAT 5'& .|||.||| | ||| .|||||| &5' GCTATGGGTAGCCA---GGTGTTA 3' RNF43 kshv-miR-K12-3 beg:1078 end:1097 pic:3' AGCGACGGCAGGAGTCTTACACT 5'& || .| |||||||| &5' ------CCCA-TTTGGAATGTGA 3' RNF43 hsa-miR-502-5p beg:844 end:863 pic:3' ATCGTGGGTCTATCGTTCCTA 5'& |. |..||| |||||||| &5' --GT-CTTAGA--GCAAGGAT 3' RNF43 sv40-miR-S1-5p beg:1056 end:1073 pic:3' TTCCGAGTAAAGTCCGGGGAGT 5'& ||| ||||||||| &5' ----CTCTT----GGCCCCTCA 3' RNF43 hsa-miR-3184 beg:464 end:481 pic:3' TTTTCGAGCCAGACTCCGGGGAGT 5'& ||||. |||||||| &5' ---AGCTTT------GGCCCCTC- 3' RNF43 hsa-miR-423-5p beg:465 end:481 pic:3' TTTCAGAGCGAGAGACGGGGAGT 5'& |||.| ||||||| &5' --------GCTTTG-GCCCCTC- 3' RNF43 sv40-miR-S1-5p beg:465 end:481 pic:3' TTCCGAGTAAAGTCCGGGGAGT 5'& |||. |||||||| &5' ---GCTTT-----GGCCCCTC- 3' RNF43 hsa-miR-3127 beg:549 end:568 pic:3' GAAGGGTAAGGTGTTCGGGACTA 5'& ||| . |||||||| &5' -----CATAG-GTGAGCCCTGA- 3' RNF43 hsa-miR-512-5p beg:277 end:296 pic:3' CTTTCACGGGAG-TTCCGACTCAC 5'& ||||. |||||||||| &5' -------CCCTTGAAGGCTGAGT- 3' RNF43 hsa-miR-615-5p beg:1108 end:1126 pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& .|.||| | ||||||| &5' ----TGGGCA--GAGGACCCC- 3' RNF43 hsv1-miR-H14-3p beg:46 end:66 pic:3' CAGCGTGCGCGGGCCGTGTCT 5'& || | ||.|||||||| &5' ---GC-CCTACCTGGCACAGA 3' RNF43 hsa-miR-1286 beg:55 end:73 pic:3' TCCCGAGTAGAACCAGGACGT 5'& ||| || ||||||| &5' --GGCACAGA---GTCCTGC- 3' RNF43 hsa-miR-4329 beg:705 end:715 pic:3' CACCTTGATCCCAGAGTCC 5'& ||||||| &5' -----------GTCTCAG- 3' RNF43 hsa-miR-4284 beg:554 end:565 pic:3' TACCCCACTACACTCGGG 5'& |||||||| &5' ----------GTGAGCCC 3' RNF43 hcmv-miR-US25-2-3p beg:603 end:633 pic:3' GGCGC-CCTCGAG--AGG---TTCACCTA 5'& |.| ||||.|| ||| |.||||.| &5' --GTGTGGAGTTCTGTCCCTGAGGTGGGT 3' RNF43 hcmv-miR-US25-2-3p beg:1095 end:1115 pic:3' GGCGCCCTCGAGAGGTTCACCTA 5'& .|.|| || ||||||. &5' -TGTGGTGGCA----AAGTGGG- 3' RNF43 hcmv-miR-US25-2-3p beg:987 end:1006 pic:3' GGCGCCCTCGAGAGGTTCACCTA 5'& || ||| | |||||| &5' ----GGC--CTCACTGAGTGGA- 3' RNF43 hiv1-miR-H1 beg:427 end:451 pic:3' CGGGTCCGTGC--GGAGGGACC 5'& ||. ||| |||||.||| &5' -CCTTATCACCTCCCTCCTTGG 3' RNF43 hiv1-miR-TAR-3p beg:699 end:726 pic:3' ACCCAAGGGATCAA---TC--GGTCTCT 5'& ||.|||. || ||||||| &5' ----TTTCCTGTCTCAGAGTCCCAGAGA 3' RNF43 hsa-miR-1178 beg:1098 end:1118 pic:3' GATCCCTTCTTGTCACTCGTT 5'& || .| ||||.|||. &5' ----GGTGGCAAAGTGGGCAG 3' RNF43 hsa-miR-1178 beg:551 end:571 pic:3' GATCCCTTCTTGTCACTCGTT 5'& |||| ||.| |||||| &5' -TAGGT--GAGCCCTGAGCA- 3' RNF43 hsa-miR-1183 beg:207 end:221 pic:3' ACGGGTGAGAGTGGTAGTGGATGTCAC 5'& ||.||.||||| &5' ----------------CATCTGCAGTG 3' RNF43 hsa-miR-1202 beg:436 end:459 pic:3' GAGGGGGTGACGTCGAC-CGTG 5'& |||||.| || ..| || || | &5' CTCCCTC-CT-TGGGTGAGCTC 3' RNF43 hsa-miR-1207-3p beg:789 end:809 pic:3' CTTTACTCCCG-------GTCGACT 5'& ||| ||||||| &5' --------GGCAGAATTACAGCTGA 3' RNF43 hsa-miR-1207-3p beg:621 end:638 pic:3' CTTTACTCCCGGTCGACT 5'& ||..|| || |||| &5' GAGGTG-GGTACAGC--- 3' RNF43 hsa-miR-1225-3p beg:399 end:415 pic:3' GACCCCCGCCGTGTC-CCCGAGT 5'& || ||| |||.||| &5' ---------GC-CAGTGGGTTCA 3' RNF43 hsa-miR-1225-5p beg:356 end:380 pic:3' GGGGGGTGACCCGGCATGGGTG 5'& ||||.||| ||.. |.||| &5' -CCCCTACTTGGTTTCCCTCAC 3' RNF43 hsa-miR-1226 beg:132 end:151 pic:3' GATCCCTTGTGTCCCGACCACT 5'& |||| ||| ||||||| &5' ----GGAAG--AGGACTGGTGA 3' RNF43 hsa-miR-1229 beg:142 end:167 pic:3' GACACC-CTCCCGTCA-CCACTCTC 5'& ||| || || | |||||||| &5' ---TGGTGATGGTGGAGGGTGAGAG 3' RNF43 hsa-miR-1238 beg:723 end:741 pic:3' CCCCGTCTGTCTGCTCCTTC 5'& ||.||| | |||||| &5' --GGTAGAA--AGGAGGAA- 3' RNF43 hsa-miR-1244 beg:234 end:256 pic:3' TTGGTAGAGTATGTTTGGTTGATGAA 5'& ||| | || .| |||||.||.|| &5' --CCAGC-CAGGC-AACCAGCTGCT- 3' RNF43 hsa-miR-124star beg:446 end:466 pic:3' TAGTTCCAGGCGACACTTGTGC 5'& .||| ||| ||||||| &5' ----GGGTGAGCTCTGAACAC- 3' RNF43 hsa-miR-124star beg:549 end:572 pic:3' TAGT-TCCAGGCGACACTTGTGC 5'& || |||| || |||.||| &5' --CATAGGTGAGCCCTGAGCAC- 3' RNF43 hsa-miR-1250 beg:115 end:136 pic:3' TTTCCGGTGTAGG----TCGTGGCA 5'& .|| ||| |||||.| &5' ------TACTTCCTAGAAGCACTG- 3' RNF43 hsa-miR-1252 beg:517 end:533 pic:3' ATTTACTTAAGTTAAAGGAAGA 5'& ||| |||||||.| &5' ---------TCATTTTCCTTTT 3' RNF43 hsa-miR-1253 beg:820 end:835 pic:3' ACGTCCGACTAGAAGAAGAGA 5'& || ||||||||| &5' --------GAG-TTCTTCTCT 3' RNF43 hsa-miR-1260 beg:1097 end:1115 pic:3' ACCACCGTCTCCACCCTA 5'& |||||||| ||||| &5' TGGTGGCAAA-GTGGG-- 3' RNF43 hsa-miR-1260b beg:1096 end:1115 pic:3' TACCACCGTCACCACCCTA 5'& .|||||||| ||||| &5' GTGGTGGCAAA-GTGGG-- 3' RNF43 hsa-miR-1261 beg:1244 end:1263 pic:3' TTCGGTTTCG-GAATAGGTA 5'& ||.|| .||||||| &5' --GCTAATATATTTATCCA- 3' RNF43 hsa-miR-1262 beg:1245 end:1263 pic:3' TAGGAAGATGTT-TAAGTGGGTA 5'& ||| |||.|.||| &5' ------CTAATATATTTATCCA- 3' RNF43 hsa-miR-1266 beg:547 end:569 pic:3' TCGGGA-CAAGATGTCGGGACTCC 5'& ||| || ||||||||| &5' AGCATAGGTG----AGCCCTGAG- 3' RNF43 hsa-miR-1266 beg:635 end:657 pic:3' TCGGGA-CAAGATGTCGGGACTCC 5'& ||||.| |||| |.|||.|| &5' AGCCTTGGTTC-----CTCTGGGG 3' RNF43 hsa-miR-1267 beg:404 end:419 pic:3' ACCCCTAATGTGAAGTTGTCC 5'& |||| ||||.||| &5' TGGG--------TTCAGCAG- 3' RNF43 hsa-miR-1268 beg:370 end:389 pic:3' GGGGGTGGTGGTGCGGGC 5'& |||.|||| ||| |||. &5' CCCTCACC-CCAAGCCT- 3' RNF43 hsa-miR-1270 beg:340 end:358 pic:3' TGTGTCGAGAAGGTATAGAGGTC 5'& ||| ||| |||||| &5' -----GCTGCTCCT--TCTCCA- 3' RNF43 hsa-miR-1279 beg:878 end:896 pic:3' TCTTTCTTCGTTATACT 5'& ||.|| |||||| .|| &5' AGGAA-AAGCAAAGTG- 3' RNF43 hsa-miR-1279 beg:132 end:151 pic:3' TCTTTCTTCGTTATACT 5'& |.||||.| .||| &5' -GGAAGAGGACTGGTGA 3' RNF43 hsa-miR-1282 beg:779 end:798 pic:3' TTCGTCTTTTTCCGTTTGCT 5'& |.|.|| ||||||||.| &5' AGGTAG-AAAAGGCAGA--- 3' RNF43 hsa-miR-1287 beg:226 end:240 pic:3' CTGAGCTTGGTGACTAGGTCGT 5'& |||. .|||||| &5' --------CCAT--GTCCAGC- 3' RNF43 hsa-miR-1291 beg:741 end:764 pic:3' TGACGACCAGAAGTCAGTCCCGGT 5'& ||||||| |||.| || |||| &5' -CTGCTGGACTTTA-TCTGGGC-- 3' RNF43 hsa-miR-1294 beg:416 end:435 pic:3' TCTGTTGT-TACGGTTGGAGTGT 5'& |||. ||| ||||.|. &5' ----AACGCATGAC-ACCTTAT- 3' RNF43 hsa-miR-1296 beg:35 end:55 pic:3' CCTCTACCTCGGTCCCGGGATT 5'& ||||| |. |||||||| &5' --AGATGT-GTTTGGGCCCTA- 3' RNF43 hsa-miR-1298 beg:759 end:783 pic:3' ATGTAGACCTGTCGG---CTTACTT 5'& ||.||| |.|||.| &5' -------GGGCAGAGGAAGGATGGA 3' RNF43 hsa-miR-1299 beg:174 end:194 pic:3' AGGGAGTGTGTCTTAAGGTCTT 5'& |||. | | ||| |||||| &5' TCCTGCTC-CAGC--TCCAGA- 3' RNF43 hsa-miR-1299 beg:22 end:40 pic:3' AGGGAGTGTGTCTTA----AGGTCTT 5'& |||.| |||||| &5' ----------AGAGTGTGCTCCAGA- 3' RNF43 hsa-miR-1306 beg:15 end:34 pic:3' GTGG-TGG-TCTCGGTTGCA 5'& || ||| ||||. .| &5' --CCAACCAAGAGTGTGC-- 3' RNF43 hsa-miR-1321 beg:425 end:445 pic:3' TAGTGTA--AGTGGAGGGAC 5'& ||| |||||||||| &5' --CACCTTATCACCTCCCT- 3' RNF43 hsa-miR-135a beg:925 end:948 pic:3' AGTGTATCCTTATTTTTCGGTAT 5'& .| |.|| |||||||| &5' --GCTCCCCAGTAT-AAGCCATA 3' RNF43 hsa-miR-138 beg:447 end:471 pic:3' GCCGGACTA-AGTGTTGTGGTCGA 5'& ||. || || |||||||||| &5' -GGT--GAGCTCTGAACACCAGCT 3' RNF43 hsa-miR-140-3p beg:607 end:630 pic:3' GGCACC--AAGAT-GGGACACCAT 5'& |||| ||||. ||||| |||. &5' --GTGGAGTTCTGTCCCTGAGGTG 3' RNF43 hsa-miR-1468 beg:851 end:874 pic:3' GTCGCTTTGT-CCGTTTGCCTC 5'& ||| ||. | || |||.||.| &5' -AGC-AAGGATGGAAAATGGGG 3' RNF43 hsa-miR-146b-3p beg:1037 end:1050 pic:3' GGTCTTGACTCAGGTGTCCCGT 5'& || ||||||| &5' ------------CCCCAGGGCA 3' RNF43 hsa-miR-1470 beg:138 end:162 pic:3' GCC---CCACGTGCCCGCCTCCCG 5'& || |||| ||.||||||. &5' -GGACTGGTGAT--GGTGGAGGGT 3' RNF43 hsa-miR-1471 beg:360 end:387 pic:3' TGTGGACCGAGGT--GTGCGCC-CG 5'& .||.|||.|.| ||| | || &5' -TACTTGGTTTCCCTCACCCCAAGC 3' RNF43 hsa-miR-155 beg:1062 end:1080 pic:3' TGGGGATAGTGCTAATCGTAATT 5'& .|||| ||| .|||||| &5' GCCCC--TCA-----GGCATTA- 3' RNF43 hsa-miR-15a beg:331 end:349 pic:3' GTGTTTGGTAATACACGACGAT 5'& .||||| |||||||| &5' TACAAAG------GTGCTGCT- 3' RNF43 hsa-miR-15b beg:329 end:349 pic:3' ACATTTGGTACTACACGACGAT 5'& ||. || |||||||| &5' -GTGTTACAAAG-GTGCTGCT- 3' RNF43 hsa-miR-16 beg:338 end:349 pic:3' GCGGTTATAAATGCACGACGAT 5'& |||||||| &5' -------------GTGCTGCT- 3' RNF43 hsa-miR-16 beg:480 end:497 pic:3' GCGGTTATAAATGCACGACGAT 5'& ||.|| | ||||||| &5' ---CAGTAA----G-GCTGCTA 3' RNF43 hsa-miR-181a beg:1077 end:1101 pic:3' TGAGTGGCT-GTCGCA-ACTTACAA 5'& || || ..| ||||||| &5' --TC-CCATTTGGAATGTGAATGT- 3' RNF43 hsa-miR-181c beg:1077 end:1101 pic:3' TGAGTGGCTGTCCA---ACTTACAA 5'& || || || ||||||| &5' --TC-CCATTTGGAATGTGAATGT- 3' RNF43 hsa-miR-181d beg:1078 end:1101 pic:3' TGGGTGGCTGTTGTTACTTACAA 5'& ||||. . ||. .||||||| &5' -CCCATTTGGAAT-GTGAATGT- 3' RNF43 hsa-miR-182 beg:520 end:541 pic:3' TCACACTCAAGATGGT---AACGGTTT 5'& ||.| || |||||||| &5' --------TTTT-CCTTTTTTGCCAAA 3' RNF43 hsa-miR-182star beg:75 end:94 pic:3' ATCAACCG-TTCAGATCTTGGT 5'& ||| ||| ||.|||| &5' ----TGGGAAAGGAAAGGACCA 3' RNF43 hsa-miR-184 beg:601 end:622 pic:3' TGGGAATAGTCAA-----GAGGCAGGT 5'& .||| .||.|||| &5' --------TAGTGTGGAGTTCTGTCC- 3' RNF43 hsa-miR-185 beg:336 end:358 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& ||| .||||. .|||||| &5' --AGGTGCTGCTCC-TTCTCCA 3' RNF43 hsa-miR-185star beg:914 end:933 pic:3' CTGGTCTCCTTTCGGTCGGGGA 5'& ||||||| |||||.|| &5' --CCAGAGGC---CCAGCTCC- 3' RNF43 hsa-miR-187 beg:406 end:431 pic:3' GGCCGA--CGT--TGTGTTCTGTGCT 5'& ||.| ||| ||.|| ||||| &5' --GGTTCAGCAGAACGCATGACAC-- 3' RNF43 hsa-miR-18a beg:412 end:435 pic:3' GATAGACGTGAT-C-TAC-GTGGAAT 5'& ||| | ||| ||||||| &5' ------GCAGAACGCATGACACCTTA 3' RNF43 hsa-miR-18b beg:416 end:435 pic:3' GATTGACGTGATCTACGTGGAAT 5'& ||| |||. ||||||| &5' --AAC-GCATGA----CACCTTA 3' RNF43 hsa-miR-1909star beg:1040 end:1062 pic:3' GTCCCGTCCGTGGCC-GTGAGT 5'& ||||||| || |.| ||||| &5' CAGGGCA-GC-CTGACCACTC- 3' RNF43 hsa-miR-1910 beg:967 end:992 pic:3' TCCGCC--GTC-CGTGTCCTGACC 5'& |.|| .|| ||||| | |||| &5' --GTGGATTAGAGCACAAGTCTGG 3' RNF43 hsa-miR-1911 beg:1164 end:1191 pic:3' GGGT---TGTCTGTACCGCCATGAGT 5'& ||.| || ||||| ||||.|.| &5' CCTAGGTACCCACATG--GGTATTTA 3' RNF43 hsa-miR-1911star beg:1153 end:1174 pic:3' CCTCTGGT-GTTACGGA-CCAC 5'& ||||||.| || ||| ||| &5' GGAGACTAGCA---CCTAGGT- 3' RNF43 hsa-miR-1913 beg:1098 end:1119 pic:3' ACCGTCGTCGCCTCCCCCGTCT 5'& | | || || ||||||| &5' --GTGGTGGCAAAGTGGGCAGA 3' RNF43 hsa-miR-1914star beg:462 end:482 pic:3' GGAGGGTCACGCCCTGGGGAGG 5'& |||| |.||||||| &5' ----CCAGCTTT-GGCCCCTCC 3' RNF43 hsa-miR-193bstar beg:1111 end:1126 pic:3' AGTAGAGCGGGAGTTTTGGGGC 5'& || |..||||| &5' -------GCAG--AGGACCCC- 3' RNF43 hsa-miR-194 beg:314 end:338 pic:3' AGGTGTACCTCAACG----ACAATGT 5'& .|||| || || ||||||| &5' ----TATGG-GTAGCCAGGTGTTACA 3' RNF43 hsa-miR-195 beg:338 end:349 pic:3' CGGTTATAAAGACACGACGAT 5'& |||||||| &5' ------------GTGCTGCT- 3' RNF43 hsa-miR-195 beg:480 end:497 pic:3' CGGTTATAAAGACACGACGAT 5'& ||.|| ||||||| &5' --CAGTAAG-----GCTGCTA 3' RNF43 hsa-miR-196b beg:236 end:261 pic:3' GGGT-TGTT-GTCCTTTGATGGAT 5'& ||| .||| ||| .||.|||. &5' -CCAGGCAACCAGCT-GCTGCCTG 3' RNF43 hsa-miR-197 beg:1083 end:1106 pic:3' CGACCCACCTCTTCCACCACTT 5'& .||| | ||| ||||||. &5' -TTGGAATGTGAATGTGGTGG- 3' RNF43 hsa-miR-199b-5p beg:125 end:137 pic:3' CTTGTCTATCAGATTTGTGACCC 5'& ||.|||||| &5' -------------AAGCACTGG- 3' RNF43 hsa-miR-205 beg:760 end:785 pic:3' GTCTGAGGCC-ACCTTACTTCCT 5'& |||| || ||||||||||| &5' CAGAGGAAGGATGGAATGAAGG- 3' RNF43 hsa-miR-20astar beg:211 end:224 pic:3' GAAATTCACGAGTATTACGTCA 5'& ||| |.||||| &5' -------TGC----AGTGCAG- 3' RNF43 hsa-miR-2113 beg:44 end:66 pic:3' CACTGTCTCGGT-----TCGTGTTTA 5'& |.||| .|||||.| &5' ------GGGCCCTACCTGGCACAGA- 3' RNF43 hsa-miR-2117 beg:647 end:667 pic:3' GACAGGA-ACCGTTT-CTCTTGT 5'& ||| ||| .. |||||.| &5' ----CCTCTGGGGGTTGAGAATA 3' RNF43 hsa-miR-218 beg:965 end:986 pic:3' TGTACCAATCTAGT-TCGTGTT 5'& | |.|||.| ||||||| &5' ----GAGTGGATTAGAGCACAA 3' RNF43 hsa-miR-222 beg:312 end:337 pic:3' TGGG--TCATCGGTCTACATCGA 5'& .|. .||||||||.||| | &5' GCTATGGGTAGCCAGGTGTTAC- 3' RNF43 hsa-miR-2278 beg:236 end:256 pic:3' GGTCCGTTGTGTGTGACGAGAG 5'& ||||||||| || .||||| &5' CCAGGCAAC-CA-GCTGCT--- 3' RNF43 hsa-miR-23astar beg:1119 end:1139 pic:3' TTTAGGGTAGGGGTCCTTGGGG 5'& ||| || ||||||.. &5' ----CCCCA-CCTGGGAACCTT 3' RNF43 hsa-miR-23astar beg:940 end:962 pic:3' TTTAGGGTA-GG--GGTCCTTGGGG 5'& |||| | |||||.|||| &5' -----CCATACAGGCCAGGGACCC- 3' RNF43 hsa-miR-23bstar beg:945 end:963 pic:3' TTTAGTCGTACGGTCCTTGGGT 5'& ||| ||||||.||||| &5' ----CAG---GCCAGGGACCCA 3' RNF43 hsa-miR-24-2star beg:1095 end:1117 pic:3' GACACAAAGTCGAGTCATCCGT 5'& |||| ..|| |||.|||| &5' -TGTGG--TGGCAAAGTGGGCA 3' RNF43 hsa-miR-26a-1star beg:654 end:674 pic:3' GCACGTTCATTGGTTCTTATCC 5'& || ..|| .|||||||| &5' -GT-TGAGAA--TAAGAATAG- 3' RNF43 hsa-miR-26bstar beg:850 end:873 pic:3' CTCGGTTCATTACCTCTTGTCC 5'& ||| |||| .||||| ||..|| &5' GAG-CAAG-GATGGAAAATGGG 3' RNF43 hsa-miR-27astar beg:545 end:566 pic:3' ACGAGTGTTCGTCGATTCGGGA 5'& |. .|| .|| |.|||||| &5' -GTA-GCA--TAGGTGAGCCCT 3' RNF43 hsa-miR-2909 beg:573 end:591 pic:3' GGTTCTCTACAACC-GGGATTG 5'& |.|||. || ||||.| &5' --AGGAGG----GGTCCCTGA- 3' RNF43 hsa-miR-2909 beg:549 end:568 pic:3' GGTTCTCTACAACCGGGATTG 5'& || ||.|| |||||.| &5' -CAT-AGGTGA--GCCCTGA- 3' RNF43 hsa-miR-29b-1star beg:1154 end:1166 pic:3' AGATTTGGTGGTATACTTTGGTCG 5'& ||.||.||| &5' ---------------GAGACTAGC 3' RNF43 hsa-miR-3065-3p beg:337 end:347 pic:3' GAGGTTGTTATAGGACCACGACT 5'& ||||||| &5' ---------------GGTGCTG- 3' RNF43 hsa-miR-3115 beg:212 end:235 pic:3' TGGT-TGATCATTTGGGTATA 5'& .| .| || |||.||||.| &5' GCAGTGC-AGCAAATCCATGT 3' RNF43 hsa-miR-3125 beg:637 end:654 pic:3' AGAGAGGTGTCGAAGGAGAT 5'& || | |||||||. &5' -----CCTT-GGTTCCTCTG 3' RNF43 hsa-miR-3126-5p beg:1126 end:1148 pic:3' ACGAAGACCGT---AGACAGGGAGT 5'& |||| | |.| ||||||| &5' -----CTGGGAACCTTTTTCCCTCA 3' RNF43 hsa-miR-3126-5p beg:363 end:379 pic:3' ACGAAGACCGTAGACAGGGAGT 5'& .|||. ||||||| &5' -----TTGGTT----TCCCTCA 3' RNF43 hsa-miR-3127 beg:576 end:591 pic:3' GAAGGGTAAGGTGTTC-GGGACTA 5'& | ..| |||||| &5' -----------AGGGGTCCCTGA- 3' RNF43 hsa-miR-3136 beg:1129 end:1153 pic:3' TTAC-TGGGAT--GGATAAGTCAGTC 5'& | |||.| || |||||.|| &5' ---GAACCTTTTTCCC--TCAGTTAG 3' RNF43 hsa-miR-3138 beg:368 end:399 pic:3' TGAGGGAGA------TGGAGTGACAGGTGT 5'& .|||||| .||||| |||.||.| &5' -TTCCCTCACCCCAAGCCTCA-TGTTCATA 3' RNF43 hsa-miR-3140 beg:994 end:1014 pic:3' TGATGGACTTAAGGGTTTTCGA 5'& ||||.| |||.|||| &5' -----CTGAGTGGACAAGAGCT 3' RNF43 hsa-miR-3140 beg:109 end:132 pic:3' TGATGGACTTAAGGGTTTTCGA 5'& .|.|| ||||.|.|||| &5' -TTGCCGTACTTCCTAGAAGC- 3' RNF43 hsa-miR-3143 beg:1210 end:1231 pic:3' GCTTTCTTCGCGAAATGTTACAATA 5'& ||| |.|| || |||||| &5' -GAATCAGGCACT-----ATGTTA- 3' RNF43 hsa-miR-3144-5p beg:639 end:651 pic:3' GATATATAGAGAAACCAGGGGA 5'& |||||.||. &5' ------------TTGGTTCCT- 3' RNF43 hsa-miR-3147 beg:909 end:931 pic:3' AGTGTGGGAGGAGTGACGGGTTGG 5'& ||| || | . |||||.|. &5' --ACAGCC-CA--GAGGCCCAGCT 3' RNF43 hsa-miR-3150 beg:914 end:937 pic:3' GGTTGGAGCTCCTA---GAGGGGTC 5'& .|| |||| |||||||| &5' ---GCCCAGAGGCCCAGCTCCCCAG 3' RNF43 hsa-miR-3152 beg:45 end:64 pic:3' AATAACGGGGATAAGATTGTGT 5'& | ||||| ||..|||| &5' -----GGCCCTAC-CTGGCACA 3' RNF43 hsa-miR-3153 beg:1124 end:1146 pic:3' TTTACAGGGA---TGAGCGAAAGGGG 5'& ||. || | .||||||. &5' ------CCTGGGAAC-CTTTTTCCCT 3' RNF43 hsa-miR-3172 beg:1109 end:1127 pic:3' ATTCCTGACGTTTTGGGGT 5'& ||.| | |..|||||| &5' ---GGGCAG-AGGACCCCA 3' RNF43 hsa-miR-3172 beg:671 end:692 pic:3' ATTCCTGACGTTTTGGGGT 5'& |..||| | |||||.|| &5' TGGGGAGGGAAAAACTCC- 3' RNF43 hsa-miR-3173 beg:510 end:535 pic:3' ACCG-GACGGATAAAGGAGGAAA 5'& ||| || | ||||||..||| &5' -GGCTCTATCATTTTCCTTTTTT 3' RNF43 hsa-miR-3182 beg:947 end:969 pic:3' CTGA--TGTGA-TGTCTTCG 5'& |.| . || ||||.|| &5' GGCCAGGGACCCACAGGAG- 3' RNF43 hsa-miR-3184 beg:362 end:379 pic:3' TTTTCGAGCCAGACTCCGGGGAGT 5'& ||.|||. .|||||| &5' -----CTTGGTT-----TCCCTCA 3' RNF43 hsa-miR-3190-5p beg:740 end:765 pic:3' AGA-GACCGGCAGATGGAAGGTGT 5'& ||| |||| |.||.|| .|| &5' TCTGCTGGAC-TTTATCTGG-GCA 3' RNF43 hsa-miR-3191 beg:603 end:624 pic:3' GACAGACCGGTCGATGCAGGGGT 5'& || ||| ||.| .|||||. &5' --GTGTGG--AGTTCTGTCCCT- 3' RNF43 hsa-miR-31star beg:257 end:278 pic:3' TACCGTTATACAACCGTATCGT 5'& .|||| .|.||| ||| |.| &5' GTGGC-GTGTGTGGGC-TGG-- 3' RNF43 hsa-miR-320a beg:450 end:473 pic:3' AGCGGGAGAGTTG-GGTCGAAAA 5'& .| |||| ||| |||||||| &5' -TGAGCTCTGAACACCAGCTTT- 3' RNF43 hsa-miR-320b beg:449 end:473 pic:3' AACGGGAGAGTTG-GGTCGAAAA 5'& || |||| ||| |||||||| &5' -TGAGCTCTGAACACCAGCTTT- 3' RNF43 hsa-miR-320c beg:453 end:473 pic:3' TGGGAGAGTTG-GGTCGAAAA 5'& |||| ||| |||||||| &5' ---CTCTGAACACCAGCTTT- 3' RNF43 hsa-miR-320d beg:453 end:473 pic:3' AGGAGAGTTG-GGTCGAAAA 5'& |||| ||| |||||||| &5' --CTCTGAACACCAGCTTT- 3' RNF43 hsa-miR-320d beg:369 end:387 pic:3' AGGAGAGTTGGG-TCGAAAA 5'& ||| |||| ||| ||| &5' TCC-CTCACCCCAAGC---- 3' RNF43 hsa-miR-320e beg:346 end:368 pic:3' GGAAGA-GTTGGGTC-GAAA 5'& |||||| |||||| ||| &5' CCTTCTCCAACCCCTACTT- 3' RNF43 hsa-miR-326 beg:902 end:924 pic:3' GACCT--CCTTCCCGGGTCTCC 5'& || ||| ||||||||| &5' --GGTTTGGACA-GCCCAGAGG 3' RNF43 hsa-miR-330-5p beg:903 end:924 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& |..| .|||| ||||||||. &5' GTTT-GGACA---GCCCAGAGG 3' RNF43 hsa-miR-330-5p beg:702 end:726 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& |||. || || |||||||| &5' -CCTGTCTCAGAGTCCCAGAGA 3' RNF43 hsa-miR-330-5p beg:939 end:959 pic:3' CGGATTCTGTGTCCGGGTCTCT 5'& ||| |.||||| ||||.|| &5' GCC----ATACAGG-CCAGGGA 3' RNF43 hsa-miR-335star beg:850 end:869 pic:3' CCAGTCCTCGTTATTACTTTTT 5'& |||||| .|||.|||| &5' ------GAGCAAGGATGGAAAA 3' RNF43 hsa-miR-338-3p beg:734 end:752 pic:3' GTTGTTTTAGTGACTACGACCT 5'& ..|||. ||||||| &5' ----GGAATTTC---TGCTGGA 3' RNF43 hsa-miR-33b beg:212 end:237 pic:3' CGTTACGTTGTC--GTTACGTG 5'& |||.||||.|| | ||| | &5' GCAGTGCAGCAAATCCATGTCC 3' RNF43 hsa-miR-33bstar beg:1206 end:1225 pic:3' CCCGACGTGACGGC-TCCGTGAC 5'& || .|| ||||||| &5' -----GC-TTGAATCAGGCACT- 3' RNF43 hsa-miR-33bstar beg:1062 end:1079 pic:3' CCCGACGTGACGGC---TCCGTGAC 5'& ||| |||||.| &5' ----------GCCCCTCAGGCATT- 3' RNF43 hsa-miR-34bstar beg:241 end:261 pic:3' GTTAGTCGATTACTGTGACGGAT 5'& ||| ||||| .||||||. &5' CAACCAGCT------GCTGCCTG 3' RNF43 hsa-miR-34c-5p beg:240 end:262 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& |||| ||||| .||.| |||. &5' GCAACCAGCT-GCTGC-CTGT-- 3' RNF43 hsa-miR-361-3p beg:639 end:658 pic:3' TTTAGTCTTAGTGTGGACCCCCT 5'& | | || | .||||||| &5' ---TTGGT-TC-C-TCTGGGGG- 3' RNF43 hsa-miR-362-5p beg:841 end:863 pic:3' TGAGTGTGGATCCAAGGTTCCTAA 5'& .| . |.||| ||||||| &5' -TTTGT-CTTAGAG--CAAGGAT- 3' RNF43 hsa-miR-365star beg:703 end:721 pic:3' TGTCGACGGGGACTTTCAGGGA 5'& |||.|.| |.|||||| &5' ----CTGTCTC--AGAGTCCC- 3' RNF43 hsa-miR-365star beg:269 end:292 pic:3' TGTCGAC---GGGGACTTTCAGGGA 5'& .|||| |||.||||.| |. &5' --GGCTGGATCCCTTGAAGG-CT-- 3' RNF43 hsa-miR-377 beg:252 end:272 pic:3' TGTTTTCAACGGAA-----ACACACTA 5'& ||||| ||||||. &5' --------TGCCTGTGGCGTGTGTGG- 3' RNF43 hsa-miR-379 beg:506 end:523 pic:3' GGATGCAAGGTATC-AGATGGT 5'& || |.| ||||.|| &5' --------CCCTGGCTCTATCA 3' RNF43 hsa-miR-384 beg:829 end:840 pic:3' ATACTTGTTAAAGATCCTTA 5'& |||.|||| &5' -----------TCTGGGAA- 3' RNF43 hsa-miR-412 beg:138 end:159 pic:3' TGCC-GATCACCTGGTCCACTTCA 5'& || ||.||| ||||.|| &5' --GGACTGGTGAT---GGTGGAG- 3' RNF43 hsa-miR-423-5p beg:1125 end:1148 pic:3' TTTCAGAGCGA--GAGACGGGGAGT 5'& || | ||.| .|||||| &5' -----CTGGGAACCTTTTTCCCTCA 3' RNF43 hsa-miR-4254 beg:146 end:170 pic:3' CTCTACCACCTCATCGAGG-TCCG 5'& |||||||||| .|. .||. &5' --GATGGTGGAG-GGTGAGAGGGT 3' RNF43 hsa-miR-4254 beg:768 end:795 pic:3' CTCTACC--ACC-TCATCGAGGTCCG 5'& .||||| || .|||| |||| &5' -GGATGGAATGAAGGTAGAAA-AGGC 3' RNF43 hsa-miR-4255 beg:561 end:573 pic:3' AGGTAGAGACTTGTGAC 5'& ||||.|||| &5' -------CTGAGCACT- 3' RNF43 hsa-miR-4255 beg:1184 end:1201 pic:3' AGGTAGAGACTTGTGAC 5'& |..|| ||||||| | &5' TTTATATCTGAAC-C-- 3' RNF43 hsa-miR-4256 beg:1206 end:1223 pic:3' TGGAAGTAGTCCAGTCTA 5'& .|.| |||||| || &5' GCTTGAATCAGG-CA--- 3' RNF43 hsa-miR-4259 beg:912 end:931 pic:3' AGGACTGGGGATCTGGGTTGAC 5'& .||| ||.||||.|| &5' -----GCCCAGAGGCCCAGCT- 3' RNF43 hsa-miR-4260 beg:164 end:187 pic:3' ACCCT-----GAGGTACGGGGTTC 5'& ||| .||| |||.|||. &5' -GGGTGCCGTTTCC-TGCTCCAG- 3' RNF43 hsa-miR-4260 beg:340 end:359 pic:3' ACCCTGAGGTACGGGGTTC 5'& || .|||| |.|||| &5' TGCTGCTCCTT-CTCCAA- 3' RNF43 hsa-miR-4264 beg:274 end:296 pic:3' TTACTGGTA-----CTGACTCA 5'& ||.| |.|||||| &5' ---GATCCCTTGAAGGCTGAGT 3' RNF43 hsa-miR-4265 beg:1038 end:1054 pic:3' GGGTCTCGACTCGGGTGTC 5'& |||||.|| ||||. &5' CCCAGGGC--AGCCT---- 3' RNF43 hsa-miR-4265 beg:913 end:937 pic:3' GGGTCT-CGACTCG-GGTGTC 5'& |||||| || ||| || ||| &5' CCCAGAGGCCCAGCTCCCCAG 3' RNF43 hsa-miR-4270 beg:578 end:591 pic:3' CGGGAGGGGACTGAGGGACT 5'& |. ||||||| &5' ----------GGGTCCCTGA 3' RNF43 hsa-miR-4273 beg:194 end:213 pic:3' GACAGGTAGTCTCTTGTG 5'& ||||.. |||| ||||. &5' -TGTCTG-CAGAAAACAT 3' RNF43 hsa-miR-4276 beg:977 end:1002 pic:3' CGTGT----ACTC-AGTGACTC 5'& ||||| ||. |||||||| &5' GCACAAGTCTGGCCTCACTGAG 3' RNF43 hsa-miR-4276 beg:56 end:72 pic:3' CGTGTACTCAGTGACTC 5'& ||||| ||||| ||| &5' GCACA-GAGTC-CTG-- 3' RNF43 hsa-miR-4277 beg:993 end:1015 pic:3' CACATGACACGAG---TCTTGACG 5'& |||| |. |||.||| &5' ----ACTGAGTGGACAAGAGCTG- 3' RNF43 hsa-miR-4277 beg:127 end:147 pic:3' CACATGACACGAGTCTTGACG 5'& | |||| | ||.|||| &5' --GCACTG-GAAGAGGACTG- 3' RNF43 hsa-miR-4278 beg:497 end:515 pic:3' GTTCCCGTTTGGGGGATC 5'& ||.|||||| ||||.| &5' CAGGGGCAA---CCCTGG 3' RNF43 hsa-miR-4283 beg:793 end:811 pic:3' TTTGAG--CGACTCGGGGT 5'& .||.| ||||||| &5' GAATTACAGCTGAGC---- 3' RNF43 hsa-miR-4289 beg:447 end:470 pic:3' ACTA-TCGGGACGTGTTA-CG 5'& |.| |||.||| ||| || &5' -GGTGAGCTCTGAACACCAGC 3' RNF43 hsa-miR-4290 beg:143 end:162 pic:3' CTCC-CTTCTTTCCTCCCGT 5'& || || |. ||||||. &5' --GGTGATGGT-GGAGGGT- 3' RNF43 hsa-miR-4290 beg:719 end:739 pic:3' CTC-CCTTCTTTCCTCCCGT 5'& ||| || |||||||||| &5' GAGAGGTAGAAAGGAGG--- 3' RNF43 hsa-miR-4290 beg:757 end:777 pic:3' CTCCC--TTCTTTCCTCCCGT 5'& ||| .||.||||| || &5' --GGGCAGAGGAAGGATGG-- 3' RNF43 hsa-miR-4291 beg:738 end:752 pic:3' TCGACAAGGACGACTT 5'& ||.||||||.| &5' -----TTTCTGCTGGA 3' RNF43 hsa-miR-4296 beg:947 end:965 pic:3' ACTCGGACTC-GGGTGTA 5'& .||| |.| |||||| &5' --GGCCAGGGACCCACA- 3' RNF43 hsa-miR-4296 beg:555 end:574 pic:3' ACTC-GGACTCG-GGTGTA 5'& |||| ||||||| |.| &5' TGAGCCCTGAGCACTA--- 3' RNF43 hsa-miR-4296 beg:1046 end:1060 pic:3' AC-TCGGACTCGGGTGTA 5'& | ||||||| |||| &5' -GCAGCCTGA--CCAC-- 3' RNF43 hsa-miR-4301 beg:665 end:677 pic:3' AGTGTTCACTTCATCACCCT 5'& ||| ||||||| &5' --------GAA-TAGTGGG- 3' RNF43 hsa-miR-4303 beg:985 end:1002 pic:3' GACAGGAGTCGAGTCTT 5'& ||| ||||| || || &5' CTGGCCTCA-CTGAG-- 3' RNF43 hsa-miR-4306 beg:339 end:358 pic:3' ATGACGGAAAGAGAGGT 5'& |.||||. .|||||| &5' TGCTGCTCC-TTCTCCA 3' RNF43 hsa-miR-4307 beg:764 end:786 pic:3' CCTTTGT-CCTTTTTTGTAA 5'& ||||. | |||| .|| .| &5' GGAAGGATGGAATGAAGGT- 3' RNF43 hsa-miR-4307 beg:74 end:92 pic:3' CCTTTGTCCTTTTTTGTAA 5'& ||.|| ||||||..|| &5' GGGAA-AGGAAAGGAC--- 3' RNF43 hsa-miR-4308 beg:950 end:959 pic:3' TTCTTCTTTGAGGTCCCT 5'& ||||||| &5' -----------CCAGGGA 3' RNF43 hsa-miR-4310 beg:326 end:348 pic:3' CCC----TGTACTTACGACG 5'& || ||| ..|||||| &5' -GGTGTTACAAAGGTGCTGC 3' RNF43 hsa-miR-4311 beg:97 end:114 pic:3' GTGTGAGTCGAGAGAAAG 5'& |||| || .|||.||| &5' -ACAC-CA-TTCTTTTT- 3' RNF43 hsa-miR-4314 beg:703 end:725 pic:3' GACAGGGTAA-AGGGTCTC 5'& |||||.|| |||||||| &5' CTGTCTCAGAGTCCCAGAG 3' RNF43 hsa-miR-4316 beg:374 end:392 pic:3' GTGGTCGATCGGAGTGG 5'& |||| | |||||||. &5' CACCC-CAAGCCTCAT- 3' RNF43 hsa-miR-4316 beg:978 end:999 pic:3' GTGGTC-GATCGGAGTGG 5'& ||| || ||.|||||||. &5' CACAAGTCTGGCCTCACT 3' RNF43 hsa-miR-4316 beg:460 end:482 pic:3' GTGGTCGA--TCGGAGTGG 5'& |||||||| .||| | || &5' CACCAGCTTTGGCCCCTCC 3' RNF43 hsa-miR-4318 beg:22 end:39 pic:3' TCGTACATGGGTGTCAC 5'& || .|||.|.| ||| &5' AGAGTGTGCTC-CAG-- 3' RNF43 hsa-miR-4320 beg:55 end:71 pic:3' TCCTTCGATGTCTTAGGG 5'& .|| |||||.|||. &5' ----GGC-ACAGAGTCCT 3' RNF43 hsa-miR-4320 beg:705 end:721 pic:3' TCCTTCGATGTCTTAGGG 5'& |. ||||.|||| &5' -----GTCTCAGAGTCCC 3' RNF43 hsa-miR-4320 beg:764 end:780 pic:3' TCCTTCGATGTCTTAGGG 5'& |||||| |..|||| &5' AGGAAGG-ATGGAAT--- 3' RNF43 hsa-miR-4323 beg:255 end:277 pic:3' AGACTCCG-ACAC-CCCGAC 5'& ||| ||| |||| |||||| &5' -CTGTGGCGTGTGTGGGCTG 3' RNF43 hsa-miR-4327 beg:922 end:945 pic:3' GGTCAGGGGGTAC-GTTCGG 5'& |||| ||||| .||||| &5' CCAGCTCCCCAGTATAAGCC 3' RNF43 hsa-miR-449cstar beg:1147 end:1167 pic:3' TGTCTCTCCTCACGTTGATCGTT 5'& .|| |.|||| ||||||| &5' -TAGTGGGGAG----ACTAGCA- 3' RNF43 hsa-miR-484 beg:1042 end:1056 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& ||.| ||||||| &5' ---------GGGC--AGCCTGA 3' RNF43 hsa-miR-486-3p beg:165 end:185 pic:3' TAGGACATGACTC--GACGGGGC 5'& ||.| | ||||.|| &5' -----GTGCCGTTTCCTGCTCC- 3' RNF43 hsa-miR-486-3p beg:53 end:76 pic:3' TAGGACA-TGACTC--GACGGGGC 5'& |||| || ||| ||||.|| &5' --CCTGGCACAGAGTCCTGCTCC- 3' RNF43 hsa-miR-486-3p beg:338 end:351 pic:3' TAGGACATGACTCGACGGGGC 5'& | |||||.|| &5' ----------GTGCTGCTCC- 3' RNF43 hsa-miR-488star beg:742 end:763 pic:3' AACTCTCACGGT----AATAGACCC 5'& |||. ||||||||| &5' -------TGCTGGACTTTATCTGGG 3' RNF43 hsa-miR-490-5p beg:48 end:70 pic:3' TGGGTGGACC---TCT-AGGTACC 5'& ||.|||||| ||| ||| &5' -CCTACCTGGCACAGAGTCC---- 3' RNF43 hsa-miR-497 beg:330 end:349 pic:3' TGTTTGGTGTCA-CACGACGAC 5'& ..||| |||||||| &5' -----TTACAAAGGTGCTGCT- 3' RNF43 hsa-miR-501-5p beg:753 end:775 pic:3' AGAGTGGGTCC--CTGTTTCCTAA 5'& |.|.| || || .|||||| &5' --TTATCTGGGCAGAGGAAGGAT- 3' RNF43 hsa-miR-505star beg:633 end:651 pic:3' TGTAGTTATGAAGG-ACCGAGGG 5'& .| || |||.|||. &5' --------GCAGCCTTGGTTCCT 3' RNF43 hsa-miR-505star beg:494 end:519 pic:3' TGTAGTTA-TGAA-GGACCGAGGG 5'& ||||||. .| ||||||||. &5' ACATCAGGGGCAACCCTGGCTCT- 3' RNF43 hsa-miR-513c beg:645 end:665 pic:3' TATTTGCTGTGGAGG-----AACTCTT 5'& ||||. ||||||| &5' ----------CCTCTGGGGGTTGAGAA 3' RNF43 hsa-miR-514b-5p beg:643 end:665 pic:3' TACTAACGGAGGGAG--AACTCTT 5'& |.|| ||||. ||||||| &5' --GGTT-CCTCTGGGGGTTGAGAA 3' RNF43 hsa-miR-515-3p beg:1203 end:1225 pic:3' TTGCGAGGTTTTCTTCCGTGAG 5'& .|||||. || ||||||| &5' GACGCTTGAATC--AGGCACT- 3' RNF43 hsa-miR-519e beg:1203 end:1225 pic:3' TTGTGAGATTTTCCTCCGTGAA 5'& .||.|| |.|| ||||||| &5' GACGCT-TGAATC-AGGCACT- 3' RNF43 hsa-miR-520a-5p beg:643 end:657 pic:3' TCTTTCATGAAGGGAGACCTC 5'& |.|||||||.| &5' ----------TTCCTCTGGGG 3' RNF43 hsa-miR-520f beg:1203 end:1225 pic:3' TTGGGAGATTTTCCTTCGTGAA 5'& .|| || |.|| |.||||| &5' GACGCT-TGAATC-AGGCACT- 3' RNF43 hsa-miR-525-5p beg:636 end:657 pic:3' TCTTTCACG----TAGGGAGACCTC 5'& || .|.|||||||.| &5' -------GCCTTGGTTCCTCTGGGG 3' RNF43 hsa-miR-542-5p beg:575 end:591 pic:3' AGAGCACTGTACTA-CTAGGGGCT 5'& || |.||||.|| &5' -----------GAGGGGTCCCTGA 3' RNF43 hsa-miR-542-5p beg:608 end:626 pic:3' AGAGCACTGTACTAC---TAGGGGCT 5'& || .||||.|| &5' -----------GAGTTCTGTCCCTGA 3' RNF43 hsa-miR-544 beg:291 end:310 pic:3' CTTGAACGATT-TTTACGTCTTA 5'& |.| .|. |||||| &5' ------GTTTTTGAGGGCAGAA- 3' RNF43 hsa-miR-550 beg:1056 end:1079 pic:3' CCCGAGAATGAGGGAGTCCGTGA 5'& |||||. ||||||||||.| &5' ---CTCTTGGCCCCTCAGGCATT 3' RNF43 hsa-miR-550star beg:471 end:492 pic:3' TACACGGACTCCC-TCATTCTGT 5'& ||| ||||||.| &5' ----GCCCCTCCACAGTAAGGC- 3' RNF43 hsa-miR-551bstar beg:351 end:374 pic:3' CCAGAG--TGGGTGCGAACTAAAG 5'& |||| |||| ||||.|||| &5' --TCTCCAACCCCTACTTGGTTTC 3' RNF43 hsa-miR-554 beg:129 end:149 pic:3' TGACCGACTCAGTCCTGATCG 5'& ||||| || ||||||.|. &5' ACTGGA--AG--AGGACTGGT 3' RNF43 hsa-miR-561 beg:578 end:597 pic:3' TGAAGTTCCTAGAA--TTTGAAAC 5'& |.||.|| ||.|||| &5' -----AGGGGTCCCTGAAGCTTT- 3' RNF43 hsa-miR-567 beg:610 end:635 pic:3' CAAGACAGGACCTTCTTGTATGA 5'& ||||||||| ||.| . .||| &5' GTTCTGTCCCTGAGGTGGGTAC- 3' RNF43 hsa-miR-571 beg:180 end:190 pic:3' GAGTGAGTCTACCGGTTGAGT 5'& |||.||| &5' -------------CCAGCTC- 3' RNF43 hsa-miR-571 beg:912 end:932 pic:3' GAGTGAGTCTACC-GGTTGAGT 5'& .| |||| || |||.||| &5' ---GCCCAGA-GGCCCAGCTC- 3' RNF43 hsa-miR-578 beg:972 end:987 pic:3' TGTTAGGATCTCGTGTTCTTC 5'& .||||||||||| &5' ------TTAGAGCACAAG--- 3' RNF43 hsa-miR-578 beg:989 end:1012 pic:3' TGTTAGGAT---CTCG--TGTTCTTC 5'& ||| |||. ||||||. &5' -----CCTCACTGAGTGGACAAGAG- 3' RNF43 hsa-miR-581 beg:970 end:987 pic:3' TGACTAGATCTCTTGTGTTCT 5'& |||. |||.|||||| &5' ---GATT---AGAGCACAAG- 3' RNF43 hsa-miR-583 beg:519 end:534 pic:3' CATTACCCTGGAAGGAGAAAC 5'& |..|||||.||| &5' --------ATTTTCCTTTTT- 3' RNF43 hsa-miR-584 beg:929 end:948 pic:3' GAGTCAGGGTCC-GTTTGGTATT 5'& ||||| .||.||||| &5' ------CCCAGTATAAGCCATA- 3' RNF43 hsa-miR-587 beg:846 end:868 pic:3' CACTGAGTAGTGGA--TACCTTT 5'& | ||.| .| ||||||| &5' --GTCTTAGAGCAAGGATGGAAA 3' RNF43 hsa-miR-597 beg:1015 end:1037 pic:3' TGTCACC--AGTAG-CTCACTGTGT 5'& || ||||| |.||||||. &5' -----GGCCTCATCAGGGTGACAT- 3' RNF43 hsa-miR-597 beg:43 end:64 pic:3' TGTCACCAGTAGCTCACTGTGT 5'& ||| ||.|||| &5' ----TGGGCCCTACCTGGCACA 3' RNF43 hsa-miR-599 beg:53 end:65 pic:3' CAAACTATTTGACTGTGTTG 5'& |||.||||. &5' ----------CTGGCACAG- 3' RNF43 hsa-miR-615-5p beg:261 end:283 pic:3' CTAGGCTCGTGGCC--CCTGGGGG 5'& || | . || |||.|||. &5' ----CGTGTGTGGGCTGGATCCCT 3' RNF43 hsa-miR-616star beg:286 end:303 pic:3' TTCAGTGACTTCCCAAAACTCA 5'& .||||. ||||||| &5' -----GCTGAGT--TTTTGAG- 3' RNF43 hsa-miR-620 beg:341 end:358 pic:3' TAAAGATATAGATAGAGGTA 5'& ||. || |||||| &5' ----CTGC-TCCTTCTCCA- 3' RNF43 hsa-miR-625 beg:359 end:378 pic:3' CCTGATATCTTGAAAGGGGGA 5'& ||| . ||||||.| &5' ---CTACTT-GGTTTCCCTC- 3' RNF43 hsa-miR-625 beg:1125 end:1147 pic:3' CCTGATATCTTG---AAAGGGGGA 5'& ||. .|||| ||||||.| &5' ---CTG-GGAACCTTTTTCCCTC- 3' RNF43 hsa-miR-628-5p beg:402 end:418 pic:3' GGAGATCATTTATACAGTCGTA 5'& |||...| |||||| &5' -----AGTGGGT---TCAGCA- 3' RNF43 hsa-miR-629 beg:554 end:565 pic:3' TCAAGAGGGTTGCATTTGGGT 5'& ||.|.||| &5' ------------GTGAGCCC- 3' RNF43 hsa-miR-632 beg:476 end:498 pic:3' AGGGTGTCC-TTCGTCTGTG 5'& .|||||| |.|| | .|| &5' -TCCACAGTAAGGCTGCTAC 3' RNF43 hsa-miR-632 beg:956 end:976 pic:3' AGGGTGTCCT-TCGTCTGTG 5'& ||||||||| || ||. &5' -CCCACAGGAGAGTGGAT-- 3' RNF43 hsa-miR-642 beg:662 end:684 pic:3' GTTCTGTGTAAACCTCTCCCTG 5'& .|||| |||.|||||| &5' TAAGAATAG--TGGGGAGGGA- 3' RNF43 hsa-miR-644 beg:483 end:500 pic:3' CGAGATTCTTTCGGTGTGA 5'& ||||. ||.|||. &5' ----TAAGGCTGCTACAT- 3' RNF43 hsa-miR-644 beg:932 end:949 pic:3' CGAGATTCT--TTCGGTGTGA 5'& || ||||||.|| &5' ------AGTATAAGCCATAC- 3' RNF43 hsa-miR-646 beg:235 end:256 pic:3' CGGAGTCTCCG----TCGACGAA 5'& ||| |||| ||||||| &5' GCC----AGGCAACCAGCTGCT- 3' RNF43 hsa-miR-646 beg:477 end:496 pic:3' CGGAGTCTCCGTCGACGAA 5'& || ||| .|||||| &5' -CCACAGTAA-GGCTGCT- 3' RNF43 hsa-miR-647 beg:230 end:241 pic:3' CTTCCTTCACTCACGTCGGTG 5'& || |||||| &5' -----------GTCCAGCCA- 3' RNF43 hsa-miR-648 beg:1039 end:1061 pic:3' TGGTCACG--GGACGTGTGAA 5'& |||| || |||| |||| &5' -CCAGGGCAGCCTGACCACT- 3' RNF43 hsa-miR-652 beg:162 end:173 pic:3' GTGTTGGGATCACCGCGGTAA 5'& || ||.|||.| &5' ---------AG-GGTGCCGT- 3' RNF43 hsa-miR-657 beg:148 end:173 pic:3' GGATC-TCTCCCACTCTTGGACGG 5'& |.| .||||||||||. |||| &5' --TGGTGGAGGGTGAGAGGGTGCC 3' RNF43 hsa-miR-660 beg:312 end:325 pic:3' GTTGAGGCTATACGTTACCCAT 5'& || ||||||| &5' ------------GCTATGGGTA 3' RNF43 hsa-miR-660 beg:611 end:634 pic:3' GTTGAGGCTAT-ACGTTACCCAT 5'& .||.| || .|||||| &5' ---TTCTGTCCCTGAGGTGGGTA 3' RNF43 hsa-miR-660 beg:1168 end:1187 pic:3' GTTGAGGCTATACGT-TACCCAT 5'& |.|| || ||||||| &5' -------GGTACCCACATGGGTA 3' RNF43 hsa-miR-664star beg:320 end:330 pic:3' TAGGTTAGTAAAAGGGATCGGTCA 5'& ||||||| &5' ----------------TAGCCAG- 3' RNF43 hsa-miR-665 beg:1041 end:1066 pic:3' TCCC--CGGAGTCG-GAGGACCA 5'& |||| |||| | | |||.||| &5' AGGGCAGCCTGACCACTCTTGG- 3' RNF43 hsa-miR-668 beg:1013 end:1036 pic:3' CATCACCCGGCTCGG-CTCACTGT 5'& |||||| |.|||||| &5' ----TGGGCCTCATCAGGGTGACA 3' RNF43 hsa-miR-671-3p beg:574 end:595 pic:3' CCACCTC-GGGACTCTTGGCCT 5'& || ||.| |||||| |.|. &5' GGAGGGGTCCCTGA-AGCT--- 3' RNF43 hsa-miR-711 beg:400 end:414 pic:3' GAATGCAGAGAGGG-ACCCAGGG 5'& || |||||.| &5' -----------CCAGTGGGTTC- 3' RNF43 hsa-miR-760 beg:47 end:69 pic:3' AGGGGTGT-CTGGGTCTCGGC 5'& |||.|| |.| |||||.| &5' -CCCTACCTGGCACAGAGTC- 3' RNF43 hsa-miR-767-3p beg:1097 end:1119 pic:3' TCTTTGGTACC-CCA---TACTCGTCT 5'& .||| || .||.||||| &5' -------GTGGTGGCAAAGTGGGCAGA 3' RNF43 hsa-miR-873 beg:1152 end:1177 pic:3' TCCTCTGA--GTG--TTCAAGGACG 5'& .||||||| ||| |.|| || &5' GGGAGACTAGCACCTAGGTACC--- 3' RNF43 hsa-miR-877 beg:633 end:654 pic:3' GGGACG-CGGTA--GAGGAGATG 5'& || ||| .||||||. &5' ----GCAGCCTTGGTTCCTCTG- 3' RNF43 hsa-miR-921 beg:984 end:1000 pic:3' CTTAGGACCAAGACAGGGAGTGATC 5'& |||| |||||||. &5' ----------TCTGG-CCTCACTG- 3' RNF43 hsa-miR-922 beg:738 end:750 pic:3' CTGCATCAGGATAAGAGACGACG 5'& |.||||||| &5' -------------TTTCTGCTG- 3' RNF43 hsa-miR-92bstar beg:603 end:624 pic:3' GTGACGTGGCGCAGGGCAGGGA 5'& | . | ||.|.|||||| &5' ----GTGTGGAGTTCTGTCCCT 3' RNF43 hsa-miR-934 beg:986 end:1008 pic:3' GGTCACA-GAGGTCATCATCTGT 5'& || ||| |||.|||| &5' ----TGGCCTCACTGAGTGGACA 3' RNF43 hsa-miR-939 beg:913 end:936 pic:3' GTGGGGGTCT-CGGAGTCGAGGGGT 5'& |||||| ||| |||||||||| &5' ----CCCAGAGGCC-CAGCTCCCCA 3' RNF43 hsa-miR-93star beg:402 end:419 pic:3' GCCCTTCACGATCGAGTCGTCA 5'& |||| .|.||||||| &5' -----AGTG--GGTTCAGCAG- 3' RNF43 hsv1-miR-H17 beg:168 end:191 pic:3' GGCGGAGCGCGGGGTCGCGGT 5'& |||..|| .||.||||| ||| &5' CCGTTTCCTGCTCCAGCTCCA 3' RNF43 hsv1-miR-H2star beg:249 end:271 pic:3' TCAGAC-ACGG-C-CCGCGCACGCT 5'& ||| |||| | ||||.|||.| &5' ---CTGCTGCCTGTGGCGTGTGTG- 3' RNF43 hsv1-miR-H3 beg:700 end:723 pic:3' CAGGGTTGGCGTGTCAGGGTC 5'& |.|| .| || |||||||| &5' -TTCCTGTCTCAGAGTCCCAG 3' RNF43 hsv1-miR-H5-3p beg:442 end:462 pic:3' GGCCTCCCAAACCTAGAGACTG 5'& || |||| || |||||| &5' CCTT-GGGT---GAGCTCTGA- 3' RNF43 hsv1-miR-H8 beg:500 end:521 pic:3' CTTGG-GGGACTGGGATATAT 5'& |..| |||||.|.|||| &5' GGGCAACCCTGGCTCTAT--- 3' RNF43 hsv2-miR-H20 beg:1190 end:1204 pic:3' TCTTTCCCCAGGCATTGGTTT 5'& ||.| |||||.| &5' ---------TCTG-AACCAGA 3' RNF43 hsv2-miR-H22 beg:174 end:198 pic:3' CGGGTG-GGTGCAGGTCTGGGGA 5'& || | ||| ||||||||.. &5' -CCTGCTCCAGCTCCAGACCTT- 3' RNF43 jcv-miR-J1-5p beg:699 end:717 pic:3' TACGAAAAGGGTCCAGAGTCTT 5'& |||||. ||||||||. &5' -----TTTCCT--GTCTCAGAG 3' RNF43 kshv-miR-K12-10astar beg:364 end:388 pic:3' TCACCACCAT-AGCGGGGTTCGG 5'& |||| || ||||||||| &5' --TGGTTTCCCTCACCCCAAGCC 3' RNF43 kshv-miR-K12-1star beg:326 end:348 pic:3' CCAACGTCCTT--TG--TCCACGACG 5'& |||| || ||||||||| &5' -----CAGGTGTTACAAAGGTGCTGC 3' RNF43 kshv-miR-K12-7star beg:251 end:267 pic:3' GTATTTAGGGGCAGGCCACCGCGA 5'& |.| || ||||||. &5' ---------CTG-CCTGTGGCGT- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region RNF43 High_conserved miR-503 chr17:56431808 7-mer-A1 18 3pUTR RNF43 High_conserved miR-503 chr17:56435004 7-mer-A1 36 CDS RNF43 High_conserved miR-7/7ab chr17:56435711 7-mer-A1 22 CDS RNF43 High_conserved miR-9/9ab chr17:56493219 7-mer-A1 49 5pUTR RNF43 High_conserved miR-96/507/1271 chr17:56431764 7-mer-A1 11 3pUTR RNF43 High_conserved miR-99ab/100 chr17:56437601 7-mer-m8 31 CDS RNF43 High_conserved miR-135ab/135a-5p chr17:56431357 8-mer 47 3pUTR RNF43 High_conserved miR-137/137ab chr17:56430883 7-mer-A1 13 3pUTR RNF43 High_conserved miR-138/138ab chr17:56429862 7-mer-m8 4 3pUTR RNF43 High_conserved miR-138/138ab chr17:56431834 7-mer-m8 29 3pUTR RNF43 High_conserved miR-138/138ab chr17:56435225 7-mer-A1 11 CDS RNF43 High_conserved miR-138/138ab chr17:56492919 7-mer-m8 69 CDS RNF43 High_conserved miR-140/140-5p/876-3p/1244 chr17:56435464 7-mer-A1 60 CDS RNF43 High_conserved miR-142-3p chr17:56435462 7-mer-A1 47 CDS RNF43 High_conserved miR-143/1721/4770 chr17:56430974 7-mer-m8 16 3pUTR RNF43 High_conserved miR-144 chr17:56430781 7-mer-m8 13 3pUTR RNF43 High_conserved miR-145 chr17:56432166 7-mer-A1 29 3pUTR RNF43 High_conserved miR-146ac/146b-5p chr17:56438153 7-mer-m8 44 CDS RNF43 High_conserved miR-150/5127 chr17:56493178 7-mer-A1 62 5pUTR RNF43 High_conserved miR-153 chr17:56435897 7-mer-m8 18 CDS RNF43 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr17:56431808 7-mer-A1 18 3pUTR RNF43 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr17:56431955 7-mer-m8 53 3pUTR RNF43 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr17:56435004 7-mer-A1 36 CDS RNF43 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr17:56435846 7-mer-m8 13 CDS RNF43 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr17:56440892 7-mer-m8 47 CDS RNF43 High_conserved miR-181abcd/4262 chr17:56431203 7-mer-m8 49 3pUTR RNF43 High_conserved miR-182 chr17:56431764 8-mer 11 3pUTR RNF43 High_conserved miR-183 chr17:56438171 7-mer-m8 60 CDS RNF43 High_conserved miR-18ab/4735-3p chr17:56431870 7-mer-A1 13 3pUTR RNF43 High_conserved miR-193/193b/193a-3p chr17:56440735 7-mer-m8 49 CDS RNF43 High_conserved miR-194 chr17:56431967 7-mer-A1 20 3pUTR RNF43 High_conserved miR-194 chr17:56434979 7-mer-m8 38 CDS RNF43 High_conserved miR-199ab-5p chr17:56432167 7-mer-A1 29 3pUTR RNF43 High_conserved miR-19ab chr17:56435781 7-mer-A1 7 CDS RNF43 High_conserved miR-204/204b/211 chr17:56430239 8-mer 7 3pUTR RNF43 High_conserved miR-205/205ab chr17:56431519 7-mer-m8 36 3pUTR RNF43 High_conserved miR-205/205ab chr17:56440649 7-mer-A1 60 CDS RNF43 High_conserved miR-210 chr17:56492854 7-mer-m8 38 CDS RNF43 High_conserved miR-214/761/3619-5p chr17:56435848 7-mer-m8 13 CDS RNF43 High_conserved miR-214/761/3619-5p chr17:56436070 7-mer-m8 29 CDS RNF43 High_conserved miR-214/761/3619-5p chr17:56440891 7-mer-A1 56 CDS RNF43 High_conserved miR-214/761/3619-5p chr17:56492887 7-mer-A1 76 CDS RNF43 High_conserved miR-217 chr17:56448393 7-mer-m8 62 CDS RNF43 High_conserved miR-218/218a chr17:56431319 7-mer-A1 9 3pUTR RNF43 High_conserved miR-219-5p/508/508-3p/4782-3p chr17:56429978 7-mer-m8 4 3pUTR RNF43 High_conserved miR-219-5p/508/508-3p/4782-3p chr17:56448351 7-mer-m8 38 CDS RNF43 High_conserved miR-23abc/23b-3p chr17:56431207 8-mer 58 3pUTR RNF43 High_conserved miR-24/24ab/24-3p chr17:56435271 8-mer 11 CDS RNF43 High_conserved miR-24/24ab/24-3p chr17:56435878 8-mer 29 CDS RNF43 High_conserved miR-25/32/92abc/363/363-3p/367 chr17:56448370 7-mer-m8 38 CDS RNF43 High_conserved miR-29abcd chr17:56430397 7-mer-m8 29 3pUTR RNF43 High_conserved miR-31 chr17:56435101 7-mer-A1 36 CDS RNF43 High_conserved miR-103a/107/107ab chr17:56492948 7-mer-A1 60 5pUTR RNF43 High_conserved miR-338/338-3p chr17:56431553 7-mer-A1 22 3pUTR RNF43 High_conserved miR-33a-3p/365/365-3p chr17:56431225 7-mer-A1 36 3pUTR RNF43 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr17:56429952 7-mer-m8 7 3pUTR RNF43 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr17:56434849 8-mer 58 CDS RNF43 High_conserved miR-383 chr17:56435350 7-mer-A1 24 CDS RNF43 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr17:56430836 7-mer-A1 22 3pUTR RNF43 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr17:56430989 7-mer-m8 27 3pUTR RNF43 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr17:56435729 7-mer-m8 18 CDS RNF43 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr17:56438203 8-mer 16 CDS RNF43 High_conserved miR-10abc/10a-5p chr17:56430988 7-mer-A1 33 3pUTR RNF43 High_conserved miR-129-5p/129ab-5p chr17:56429917 7-mer-A1 2 3pUTR RNF43 High_conserved miR-129-5p/129ab-5p chr17:56435204 7-mer-m8 11 CDS RNF43 High_conserved miR-490-3p chr17:56435504 7-mer-m8 27 CDS RNF43 Medium_conserved miR-542-3p chr17:56430593 8-mer 13 3pUTR RNF43 Medium_conserved miR-542-3p chr17:56430995 7-mer-m8 38 3pUTR RNF43 Medium_conserved miR-542-3p chr17:56448282 7-mer-m8 42 CDS RNF43 Medium_conserved miR-544/544ab/544-3p chr17:56431994 7-mer-A1 16 3pUTR RNF43 Medium_conserved miR-544/544ab/544-3p chr17:56432096 8-mer 36 3pUTR RNF43 Medium_conserved miR-590-3p chr17:56492693 7-mer-A1 44 CDS RNF43 Medium_conserved miR-592/599 chr17:56430450 7-mer-A1 31 3pUTR RNF43 Medium_conserved miR-615-3p chr17:56436032 7-mer-m8 18 CDS RNF43 Medium_conserved miR-615-3p chr17:56440955 8-mer 7 CDS RNF43 Medium_conserved miR-653 chr17:56437515 7-mer-m8 58 CDS RNF43 Medium_conserved miR-134/3118 chr17:56493192 7-mer-A1 13 5pUTR RNF43 Medium_conserved miR-874 chr17:56431254 7-mer-m8 33 3pUTR RNF43 Medium_conserved miR-876-5p/3167 chr17:56432073 7-mer-A1 11 3pUTR RNF43 Medium_conserved miR-876-5p/3167 chr17:56435201 7-mer-A1 42 CDS RNF43 Medium_conserved miR-136 chr17:56434893 7-mer-m8 38 CDS RNF43 Medium_conserved miR-149 chr17:56435269 7-mer-m8 38 CDS RNF43 Medium_conserved miR-149 chr17:56435368 7-mer-A1 24 CDS RNF43 Medium_conserved miR-149 chr17:56435992 7-mer-m8 38 CDS RNF43 Medium_conserved miR-149 chr17:56440932 7-mer-m8 42 CDS RNF43 Medium_conserved miR-186 chr17:56432192 7-mer-m8 11 3pUTR RNF43 Medium_conserved miR-197 chr17:56493208 7-mer-m8 27 5pUTR RNF43 Medium_conserved miR-224 chr17:56435622 7-mer-m8 44 CDS RNF43 Medium_conserved miR-28-5p/708/1407/1653/3139 chr17:56430465 7-mer-m8 13 3pUTR RNF43 Medium_conserved miR-296-3p chr17:56430051 7-mer-A1 22 3pUTR RNF43 Medium_conserved miR-296-3p chr17:56431791 7-mer-m8 20 3pUTR RNF43 Medium_conserved miR-299/299-3p/3563-3p chr17:56431122 7-mer-m8 47 3pUTR RNF43 Medium_conserved miR-320abcd/4429 chr17:56431831 7-mer-m8 27 3pUTR RNF43 Medium_conserved miR-324-5p chr17:56435121 7-mer-A1 11 CDS RNF43 Medium_conserved miR-326/330/330-5p chr17:56431381 7-mer-m8 24 3pUTR RNF43 Medium_conserved miR-326/330/330-5p chr17:56431579 8-mer 0 3pUTR RNF43 Medium_conserved miR-326/330/330-5p chr17:56435051 7-mer-m8 51 CDS RNF43 Medium_conserved miR-326/330/330-5p chr17:56435959 7-mer-m8 31 CDS RNF43 Medium_conserved miR-328a/328b-3p chr17:56429867 7-mer-m8 7 3pUTR RNF43 Medium_conserved miR-328a/328b-3p chr17:56430371 7-mer-m8 16 3pUTR RNF43 Medium_conserved miR-328a/328b-3p chr17:56493073 8-mer 33 5pUTR RNF43 Medium_conserved miR-329/329ab/362-3p chr17:56492733 7-mer-m8 49 CDS RNF43 Medium_conserved miR-342-3p chr17:56432302 8-mer 58 3pUTR RNF43 Medium_conserved miR-370 chr17:56439907 7-mer-m8 33 CDS RNF43 Medium_conserved miR-370 chr17:56494443 7-mer-A1 62 5pUTR RNF43 Medium_conserved miR-374ab chr17:56430785 7-mer-m8 9 3pUTR RNF43 Medium_conserved miR-377 chr17:56432303 7-mer-m8 42 3pUTR RNF43 Medium_conserved miR-377 chr17:56432316 8-mer 56 CDS RNF43 Medium_conserved miR-378/422a/378bcdefhi chr17:56435400 7-mer-m8 29 CDS RNF43 Medium_conserved miR-433 chr17:56430915 7-mer-A1 2 3pUTR RNF43 Medium_conserved miR-127/127-3p chr17:56438299 7-mer-m8 7 CDS RNF43 Medium_conserved miR-485-5p/1698/1703/1962 chr17:56431914 7-mer-A1 11 3pUTR RNF43 Medium_conserved miR-485-5p/1698/1703/1962 chr17:56435195 7-mer-m8 27 CDS RNF43 Medium_conserved miR-491-5p chr17:56492765 7-mer-A1 51 CDS RNF43 Medium_conserved miR-494 chr17:56494414 7-mer-A1 60 5pUTR RNF43 Medium_conserved miR-496 chr17:56430730 7-mer-m8 13 3pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score RNF43 RAID00053892 hsa-miR-519e-3p miRNA MIMAT0002829 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00154349 hsa-miR-299-3p miRNA MIMAT0000687 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID00255627 hsa-miR-423-5p miRNA MIMAT0004748 RNF43 mRNA 54894 Prediction 0.2202 RNF43 RAID00345568 hsa-miR-335-5p miRNA MIMAT0000765 RNF43 mRNA 54894 Microarray 0.5483 RNF43 RAID00347853 hsa-miR-23c miRNA MIMAT0018000 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID00409763 hsa-miR-550a-3-5p miRNA MIMAT0020925 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00446626 hsa-miR-4530 miRNA MIMAT0019069 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00457271 hsa-miR-3065-3p miRNA MIMAT0015378 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00493737 hsa-miR-3173-3p miRNA MIMAT0015048 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00502493 hsa-miR-135a-5p miRNA MIMAT0000428 RNF43 mRNA 54894 Prediction 0.2202 RNF43 RAID00541325 hsa-miR-18a-5p miRNA MIMAT0000072 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID00561480 hsa-miR-411-5p miRNA MIMAT0003329 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00595075 hsa-miR-3184-5p miRNA MIMAT0015064 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00649099 hsa-miR-1277-5p miRNA MIMAT0022724 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00664065 hsa-miR-497-5p miRNA MIMAT0002820 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID00692052 hsa-miR-6812-5p miRNA MIMAT0027524 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00712509 hsa-miR-6852-3p miRNA MIMAT0027605 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00760695 hsa-miR-578 miRNA MIMAT0003243 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00830791 hsa-miR-181c-5p miRNA MIMAT0000258 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID00892055 hsa-miR-18b-5p miRNA MIMAT0001412 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID00908726 hsa-miR-1271-3p miRNA MIMAT0022712 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00959462 hsa-miR-4430 miRNA MIMAT0018945 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID00977810 hsa-miR-3652 miRNA MIMAT0018072 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01141031 hsa-miR-138-5p miRNA MIMAT0000430 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID01155467 hsa-miR-3942-3p miRNA MIMAT0019230 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01182543 hsa-miR-4318 miRNA MIMAT0016869 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01196381 hsa-miR-15b-5p miRNA MIMAT0000417 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID01203703 hsa-miR-501-5p miRNA MIMAT0002872 RNF43 mRNA 54894 CLIP-seq 0.5483 RNF43 RAID01220008 hsa-miR-6845-5p miRNA MIMAT0027590 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01264490 hsa-miR-361-3p miRNA MIMAT0004682 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01314431 hsa-miR-6862-3p miRNA MIMAT0027626 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01331374 hsa-miR-205-5p miRNA MIMAT0000266 RNF43 mRNA 54894 Prediction 0.2202 RNF43 RAID01339928 hsa-miR-6784-3p miRNA MIMAT0027469 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01344510 hsa-miR-191-3p miRNA MIMAT0001618 RNF43 mRNA 54894 CLIP-seq 0.5483 RNF43 RAID01445989 hsa-miR-519c-5p miRNA MIMAT0002831 RNF43 mRNA 54894 CLIP-seq 0.5483 RNF43 RAID01476096 hsa-miR-33b-3p miRNA MIMAT0004811 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01568668 hsa-miR-16-5p miRNA MIMAT0000069 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID01588279 hsa-miR-6814-5p miRNA MIMAT0027528 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01610076 hsa-miR-149-5p miRNA MIMAT0000450 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID01626677 hsa-miR-5591-3p miRNA MIMAT0022302 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01673768 hsa-miR-4286 miRNA MIMAT0016916 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01701391 hsa-miR-181a-5p miRNA MIMAT0000256 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID01734897 hsa-miR-362-5p miRNA MIMAT0000705 RNF43 mRNA 54894 CLIP-seq 0.5483 RNF43 RAID01858532 hsa-miR-548al miRNA MIMAT0019024 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01862290 hsa-miR-517-5p miRNA MIMAT0002851 RNF43 mRNA 54894 CLIP-seq 0.5483 RNF43 RAID01896547 hsa-miR-4487 miRNA MIMAT0019021 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID01912492 hsa-miR-137 miRNA MIMAT0000429 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID01948938 hsa-miR-4522 miRNA MIMAT0019060 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02016608 hsa-miR-4752 miRNA MIMAT0019889 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02042543 hsa-miR-202-3p miRNA MIMAT0002811 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID02118061 hsa-miR-378a-3p miRNA MIMAT0000732 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02152227 hsa-miR-23b-3p miRNA MIMAT0000418 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID02252930 hsa-miR-135b-5p miRNA MIMAT0000758 RNF43 mRNA 54894 Prediction 0.2381 RNF43 RAID02335291 hsa-miR-4726-3p miRNA MIMAT0019846 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02371520 hsa-miR-1273h-3p miRNA MIMAT0030416 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02374685 hsa-miR-370-3p miRNA MIMAT0000722 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID02375942 hsa-miR-424-5p miRNA MIMAT0001341 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID02384552 hsa-miR-186-5p miRNA MIMAT0000456 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02455384 hsa-miR-195-5p miRNA MIMAT0000461 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID02460007 hsa-miR-23a-3p miRNA MIMAT0000078 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID02502878 hsa-miR-873-5p miRNA MIMAT0004953 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02519739 hsa-miR-376c-5p miRNA MIMAT0022861 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02541536 hsa-miR-3120-5p miRNA MIMAT0019198 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02573608 hsa-miR-550a-5p miRNA MIMAT0004800 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02595306 hsa-miR-6838-5p miRNA MIMAT0027578 RNF43 mRNA 54894 Prediction 0.2202 RNF43 RAID02608601 hsa-miR-130a-5p miRNA MIMAT0004593 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02620213 hsa-miR-515-3p miRNA MIMAT0002827 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02662515 hsa-miR-6759-5p miRNA MIMAT0027418 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02683448 hsa-miR-182-5p miRNA MIMAT0000259 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID02693169 hsa-miR-376b-5p miRNA MIMAT0022923 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02704192 hsa-miR-127-3p miRNA MIMAT0000446 RNF43 mRNA 54894 CLIP-seq 0.5483 RNF43 RAID02711918 hsa-miR-4419a miRNA MIMAT0018931 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID02816413 hsa-miR-4262 miRNA MIMAT0016894 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID03040687 hsa-miR-4445-3p miRNA MIMAT0018964 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03074499 hsa-miR-6889-3p miRNA MIMAT0027679 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03143357 hsa-miR-181d-5p miRNA MIMAT0002821 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID03203161 hsa-miR-6504-5p miRNA MIMAT0025464 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03255972 hsa-miR-6762-5p miRNA MIMAT0027424 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03297482 hsa-miR-181b-5p miRNA MIMAT0000257 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6308 RNF43 RAID03364280 hsa-miR-326 miRNA MIMAT0000756 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03384248 hsa-miR-4779 miRNA MIMAT0019938 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03402173 hsa-miR-6891-5p miRNA MIMAT0027682 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03417278 hsa-miR-6842-3p miRNA MIMAT0027587 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03625393 hsa-miR-422a miRNA MIMAT0001339 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03637975 hsa-miR-525-5p miRNA MIMAT0002838 RNF43 mRNA 54894 CLIP-seq 0.5483 RNF43 RAID03749351 hsa-miR-877-3p miRNA MIMAT0004950 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03757695 hsa-miR-15a-5p miRNA MIMAT0000068 RNF43 mRNA 54894 CLIP-seq//Prediction 0.6478 RNF43 RAID03759910 hsa-miR-330-5p miRNA MIMAT0004693 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03770737 hsa-miR-3064-5p miRNA MIMAT0019864 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03802291 hsa-miR-544a miRNA MIMAT0003164 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03859548 hsa-miR-6737-5p miRNA MIMAT0027375 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03864383 hsa-miR-124-3p miRNA MIMAT0000422 RNF43 mRNA 54894 CLIP-seq 0.5483 RNF43 RAID03876996 hsa-miR-874-3p miRNA MIMAT0004911 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03885021 hsa-miR-6819-5p miRNA MIMAT0027538 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03889894 hsa-miR-4516 miRNA MIMAT0019053 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID03927915 hsa-miR-210-5p miRNA MIMAT0026475 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID04022248 hsa-miR-1261 miRNA MIMAT0005913 RNF43 mRNA 54894 Prediction 0.1828 RNF43 RAID04577941 BANCR lncRNA 100885775 RNF43 protein 54894 Microarray//RNA-seq 0.6606