PTM - CPLM Gene Name UniProt ID Type Position Code BAP1; KIAA0272; hucep-6 Q92560 Ubiquitination 139 K BAP1; KIAA0272; hucep-6 Q92560 Ubiquitination 630 K BAP1; KIAA0272; hucep-6 Q92560 Ubiquitination 127 K BAP1; KIAA0272; hucep-6 Q92560 Ubiquitination 155 K BAP1; KIAA0272; hucep-6 Q92560 Ubiquitination 275 K

PTM - dbPAF Gene Name UniProt ID Position Type Species BAP1; KIAA0272; hucep-6 Q92560 123 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 223 Y Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 241 Y Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 273 T Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 276 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 287 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 289 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 292 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 319 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 325 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 327 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 369 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 384 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 394 Y Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 395 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 401 Y Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 460 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 464 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 485 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 487 T Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 489 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 493 T Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 505 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 509 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 513 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 517 T Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 520 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 521 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 524 T Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 525 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 528 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 537 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 571 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 582 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 583 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 585 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 592 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 595 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 596 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 597 S Homo sapiens(Human) BAP1; KIAA0272; hucep-6 Q92560 609 S Homo sapiens(Human)

PTM - PhosphositePlus UniProt ID MOD_RSD Type SITE_+/-7_AA Q92560 K155-ac Acetylation EPRHLPEkQNGLSAV Q92560 K656-m1 Methylation CLKEEVEkRkkFKID Q92560 K658-m1 Methylation KEEVEkRkkFKIDDQ Q92560 K659-m1 Methylation EEVEkRkkFKIDDQR Q92560 S123-p Phosphorylation KDFTKGFsPESkGYA Q92560 Y223-p Phosphorylation LATAGEPyHDIRFNL Q92560 Y241-p Phosphorylation VPDRRIKyEARLHVL Q92560 T273-p Phosphorylation TQPELIQtHKsQESQ Q92560 S276-p Phosphorylation ELIQtHKsQESQLPE Q92560 S287-p Phosphorylation QLPEESKsAsNKsPL Q92560 S289-p Phosphorylation PEESKsAsNKsPLVL Q92560 S292-p Phosphorylation SKsAsNKsPLVLEAN Q92560 S325-p Phosphorylation GSCAQAPsHsPPNKP Q92560 S327-p Phosphorylation CAQAPsHsPPNKPKL Q92560 S369-p Phosphorylation DNHNYAKsPMQEEED Q92560 S384-p Phosphorylation LAAGVGRsRVPVRPP Q92560 Y394-p Phosphorylation PVRPPQQysDDEDDy Q92560 S395-p Phosphorylation VRPPQQysDDEDDyE Q92560 Y401-p Phosphorylation ysDDEDDyEDDEEDD Q92560 S460-p Phosphorylation KESQKDLsIPLsIKT Q92560 S464-p Phosphorylation KDLsIPLsIKTSSGA Q92560 S485-p Phosphorylation VPTHSQPsPtPsNES Q92560 T487-p Phosphorylation THSQPsPtPsNEStD Q92560 S489-p Phosphorylation SQPsPtPsNEStDTA Q92560 T493-p Phosphorylation PtPsNEStDTASEIG Q92560 S505-p Phosphorylation EIGSAFNsPLRsPIR Q92560 S509-p Phosphorylation AFNsPLRsPIRsANP Q92560 S513-p Phosphorylation PLRsPIRsANPtRPs Q92560 T517-p Phosphorylation PIRsANPtRPssPVt Q92560 S520-p Phosphorylation sANPtRPssPVtsHI Q92560 S521-p Phosphorylation ANPtRPssPVtsHIS Q92560 T524-p Phosphorylation tRPssPVtsHISKVL Q92560 S525-p Phosphorylation RPssPVtsHISKVLF Q92560 S537-p Phosphorylation VLFGEDDsLLRVDCI Q92560 S571-p Phosphorylation LAEDGVLsPLALTEG Q92560 S582-p Phosphorylation LTEGGKGssPsIRPI Q92560 S583-p Phosphorylation TEGGKGssPsIRPIQ Q92560 S585-p Phosphorylation GGKGssPsIRPIQGs Q92560 S592-p Phosphorylation sIRPIQGsQGsssPV Q92560 S595-p Phosphorylation PIQGsQGsssPVEKE Q92560 S596-p Phosphorylation IQGsQGsssPVEKEV Q92560 S597-p Phosphorylation QGsQGsssPVEKEVV Q92560 S609-p Phosphorylation EVVEATDsREKTGMV Q92560 S705-p Phosphorylation VRRRQGVsIGRLHKQ Q92560 K127-ub Ubiquitination KGFsPESkGYAIGNA Q92560 K139-ub Ubiquitination GNAPELAkAHNSHAR Q92560 K630-ub Ubiquitination SGEKYSPkELLALLK

PTM - dbPTM UniProt ID Position Code Type Resources References Q92560 327 S Phosphorylation Swiss-Prot 1010711 19413330 Q92560 395 S Phosphorylation Swiss-Prot 1010711 18220336 Q92560 487 T Phosphorylation Swiss-Prot 1010711 15302935 Q92560 489 S Phosphorylation Swiss-Prot 1010711 15302935 Q92560 582 S Phosphorylation Swiss-Prot 1010711 19413330 Q92560 583 S Phosphorylation Swiss-Prot 1010711 17525332 Q92560 592 S Phosphorylation Swiss-Prot 1010711 17525332 Q92560 597 S Phosphorylation Swiss-Prot 1010711 17525332;19413330 Q92560 384 S Phosphorylation PhosphoELM.10011 18669648;17081983 Q92560 395 S Phosphorylation PhosphoELM.10011 18669648;18220336 Q92560 489 S Phosphorylation PhosphoELM.10011 15302935 Q92560 582 S Phosphorylation PhosphoELM.10011 18669648 Q92560 583 S Phosphorylation PhosphoELM.10011 17525332 Q92560 585 S Phosphorylation PhosphoELM.10011 18669648 Q92560 592 S Phosphorylation PhosphoELM.10011 17525332 Q92560 595 S Phosphorylation PhosphoELM.10011 18669648 Q92560 596 S Phosphorylation PhosphoELM.10011 18669648 Q92560 597 S Phosphorylation PhosphoELM.10011 18669648;17525332 Q92560 487 T Phosphorylation PhosphoELM.10011 15302935 Q92560 139 K Ubiquitylation Phosphositeplus.1010730 21890473 Q92560 630 K Ubiquitylation Phosphositeplus.1010730 21890473 Q92560 287 S Phosphorylation Phosphositeplus.1010730 19276368 Q92560 289 S Phosphorylation Phosphositeplus.1010730 19276368 Q92560 292 S Phosphorylation Phosphositeplus.1010730 19276368;19664994;21406692 Q92560 384 S Phosphorylation Phosphositeplus.1010730 18669648 Q92560 395 S Phosphorylation Phosphositeplus.1010730 18220336;19276368;21659604 Q92560 464 S Phosphorylation Phosphositeplus.1010730 20068231 Q92560 489 S Phosphorylation Phosphositeplus.1010730 15302935 Q92560 583 S Phosphorylation Phosphositeplus.1010730 17525332;19276368 Q92560 592 S Phosphorylation Phosphositeplus.1010730 17525332;18077418 Q92560 595 S Phosphorylation Phosphositeplus.1010730 18077418;19276368 Q92560 596 S Phosphorylation Phosphositeplus.1010730 18077418;19276368 Q92560 597 S Phosphorylation Phosphositeplus.1010730 17525332;19276368;22115753 Q92560 487 T Phosphorylation Phosphositeplus.1010730 15302935 Q92560 394 Y Phosphorylation Phosphositeplus.1010730 19690332;21394647 Q92560 401 Y Phosphorylation Phosphositeplus.1010730 21394647 Q92560 292 S Phosphorylation HPRD 9.0 19664994 Q92560 327 S Phosphorylation HPRD 9.0 19413330 Q92560 369 S Phosphorylation HPRD 9.0 18452278 Q92560 384 S Phosphorylation HPRD 9.0 17081983,18669648 Q92560 395 S Phosphorylation HPRD 9.0 18669648,18452278 Q92560 464 S Phosphorylation HPRD 9.0 20068231 Q92560 489 S Phosphorylation HPRD 9.0 15302935 Q92560 521 S Phosphorylation HPRD 9.0 19651622 Q92560 582 S Phosphorylation HPRD 9.0 18669648,19413330 Q92560 583 S Phosphorylation HPRD 9.0 17525332,18077418 Q92560 585 S Phosphorylation HPRD 9.0 18669648 Q92560 592 S Phosphorylation HPRD 9.0 17525332,18077418 Q92560 595 S Phosphorylation HPRD 9.0 18669648 Q92560 596 S Phosphorylation HPRD 9.0 18669648,18077418 Q92560 597 S Phosphorylation HPRD 9.0 17525332,18669648,19413330,18077418 Q92560 487 T Phosphorylation HPRD 9.0 15302935 Q92560 394 Y Phosphorylation HPRD 9.0 17081983 Q92560 384 S Phosphorylation SysPTM 1.1 17081983 Q92560 394 Y Phosphorylation SysPTM 1.1 17081983

PTM - HPRD Symbol Position Code Type References BAP1 292 S Phosphorylation 19664994 BAP1 327 S Phosphorylation 19413330 BAP1 369 S Phosphorylation 18452278 BAP1 384 S Phosphorylation 17081983,18669648 BAP1 394 Y Phosphorylation 17081983 BAP1 395 S Phosphorylation 18669648,18452278 BAP1 464 S Phosphorylation 20068231 BAP1 487 T Phosphorylation 15302935 BAP1 489 S Phosphorylation 15302935 BAP1 521 S Phosphorylation 19651622 BAP1 582 S Phosphorylation 18669648,19413330 BAP1 583 S Phosphorylation 17525332,18077418 BAP1 585 S Phosphorylation 18669648 BAP1 592 S Phosphorylation 17525332,18077418 BAP1 595 S Phosphorylation 18669648 BAP1 596 S Phosphorylation 18669648,18077418 BAP1 597 S Phosphorylation 17525332,18669648,19413330,18077418

PTM - Phospho.ELM UniProt Position Code PMIDs Kinase Source Type Q92560 384 S 18669648 HTP Phosphorylation Q92560 384 S 17081983 HTP Phosphorylation Q92560 487 T 15302935 HTP Phosphorylation Q92560 582 S 18669648 HTP Phosphorylation Q92560 583 S 17525332 HTP Phosphorylation Q92560 489 S 15302935 HTP Phosphorylation Q92560 395 S 18669648 HTP Phosphorylation Q92560 395 S 18220336 HTP Phosphorylation Q92560 592 S 17525332 HTP Phosphorylation Q92560 595 S 18669648 HTP Phosphorylation Q92560 596 S 18669648 HTP Phosphorylation Q92560 597 S 18669648 HTP Phosphorylation Q92560 597 S 17525332 HTP Phosphorylation Q92560 585 S 18669648 HTP Phosphorylation

PTM - UniProt UniProt ID Position Type PMIDs Q92560 292 Phosphoserine 23186163 Q92560 369 Phosphoserine 23186163 Q92560 521 Phosphoserine 23186163 Q92560 537 Phosphoserine 23186163 Q92560 585 Phosphoserine 23186163 Q92560 597 Phosphoserine 23186163

PTM - PHOSIDA Symbol Accession Code Position Surrounding Sequence Type BAP1 IPI00465087 S 384 AAGVGRpSRVPVRP phosphorylation BAP1 IPI00465087 S 528 PVTSHIpSKVLFGE phosphorylation

PTM - BioGRID Entrez Gene BioGRID ID Position Code Type PMIDs 8314 113911 - K Ubiquitination 22118674 8314 113911 - K Ubiquitination 21139048 8314 113911 - K Ubiquitination 21890473 8314 113911 - K Ubiquitination 24703950 8314 113911 - K Ubiquitination 24816145