DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome E4F1 3'UTR 09c4c73ccb BA032982 NM_004424 chr16:2225575-2225744:+ E4F1 3'UTR af69a3d109 BA032983 NM_004424 chr16:2225237-2225785:+ E4F1 3'UTR 2c56f1d585 NM_004424 chr16:2225575-2225785:+ E4F1 3'UTR f89741d26c NM_004424 chr16:2225575-2225785:+ E4F1 3'UTR 81791e4422 NM_004424 chr16:2220220-2225785:+ E4F1 3'UTR 26a4cdb7c9 NM_004424 chr16:2224763-2225785:+ E4F1 3'UTR 6bd197b26e NM_004424 chr16:2223344-2225785:+ E4F1 3'UTR 5907e07a0c NM_004424 chr16:2220220-2225743:+ E4F1 3'UTR 1a0a6c601f NM_004424 chr16:2223276-2225743:+ E4F1 3'UTR 2400ff39fb NM_004424 chr16:2220220-2224390:+ E4F1 3'UTR 0bae00017b NM_004424 chr16:2224763-2225785:+ E4F1 3'UTR 63b59439cf NM_004424 chr16:2220220-2222366:+ E4F1 3'UTR 6bb2eae80b NM_004424 chr16:2225112-2225369:+ E4F1 5'UTR 09c4c73ccb CA051905 NM_004424 chr16:2213568-2213615:+ E4F1 5'UTR af69a3d109 CA051906 NM_004424 chr16:2213568-2213615:+

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand hsa_circ_0037499 chr16 2283882 2284389 + hsa_circ_0037501 chr16 2285081 2285144 + hsa_circ_0037500 chr16 2283882 2284782 +

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-E4F1-antisense.1 NM_001288778Tchr16:2283078-2283944 expressed E4F1 1877 protein-coding - not_available hsa-circ-E4F1-overlap.3 NM_004424Tchr16:2279570-2285695 expressed E4F1 1877 protein-coding + not_available hsa-circ-E4F1-overlap.5 NM_001288778Tchr16:2282849-2283136 expressed E4F1 1877 protein-coding + not_available hsa-circ-E4F1.1 NM_001288776Tchr16:2283882-2284389 none E4F1 1877 protein-coding + hsa_circ_0037499 hsa-circ-E4F1.10 NM_001288778Tchr16:2278372-2285144 expressed E4F1 1877 protein-coding x chr16:2278372-2285144_HeLa_S3_poly(A)- hsa-circ-E4F1.3 NM_001288776Tchr16:2285081-2285144 none E4F1 1877 protein-coding + hsa_circ_0037501 hsa-circ-E4F1.7 NM_001288776Tchr16:2283882-2284782 none E4F1 1877 protein-coding + hsa_circ_0037500 hsa-circ-E4F1.8 NM_004424Tchr16:2278372-2285144 expressed E4F1 1877 protein-coding x chr16:2278372-2285144_HeLa_S3_poly(A)- hsa-circ-E4F1.9 NM_001288776Tchr16:2278372-2285144 expressed E4F1 1877 protein-coding x chr16:2278372-2285144_HeLa_S3_poly(A)-

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT048699 hsa-miR-99a-5p Homo sapiens E4F1 1877 Homo sapiens CLASH Functional MTI (Weak) 23622248 MIRT049823 hsa-miR-92a-3p Homo sapiens E4F1 1877 Homo sapiens CLASH Functional MTI (Weak) 23622248

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0002891 hsa-miR-18a* 1877 E4F1 gguCUUCCUCGU-GA-AUCC-CGUCa |:|||: || || ||| |||| gccGGAGGGCCAGCUGGAGGUGCAGa 2 21 299 324 [hg19:16:2285534-2285559:+] 0.7176 122 0 -28.93 -0.2333 MIMAT0004610 hsa-miR-150* 1877 E4F1 gacaggggGUCCG--GACA-UGGUc ||||| |||| |||| gcacugaaCAGGCCACUGUGACCAu 2 15 217 241 [hg19:16:2285452-2285476:+] 0.7306 121 0 -20.47 -0.3537 MIMAT0004694 hsa-miR-342-5p 1877 E4F1 aguUAGUGUCUAUC-GUGGGGa ||||| || | |||||| accAUCAC-CAUCGCCACCCCc 2 19 111 131 [hg19:16:2285346-2285366:+] 0.7436 124 6 -17.65 -0.5491 MIMAT0002174 hsa-miR-484 1877 E4F1 uagcccuccccugaCUCGGACu ||||||| aucgccacccccgaGAGCCUGa 2 9 120 141 [hg19:16:2285355-2285376:+] 0.7436 140 7 -17.33 -0.5697 MIMAT0004775 hsa-miR-502-3p 1877 E4F1 acuuaGGAACGGGU-CCAC-GUAa |: || ||| |||| ||| ggccaCUGUGACCAUGGUGUCAUc 2 18 227 250 [hg19:16:2285462-2285485:+] 0.7306 120 0 -15.11 -0.6102 MIMAT0003255 hsa-miR-588 1877 E4F1 caaGAUUGGGU--AACACCGGUu ||:|| | ||||||| agcCUGACAGAGCAGGUGGCCAu 2 19 135 157 [hg19:16:2285370-2285392:+] 0.7436 141 7 -19.28 -0.2727 MIMAT0003276 hsa-miR-608 1877 E4F1 ugccucgacAG-GGUUGUGGUGGGGa || ||| |:||||||| ccgacaccaUCACCAUCGCCACCCCc 2 17 106 131 [hg19:16:2285341-2285366:+] 0.7436 159 7 -26.80 -0.4056 MIMAT0003280 hsa-miR-612 1877 E4F1 uuCCUCGAGUCUUC-GGGACG-GGUCg | :|: ||| || :| ||| |||| agGUGGUGCAGCAGAUCGUGCACCAGg 2 24 1 27 [hg19:16:2285236-2285262:+] 0.7184 126 0 -23.01 -0.1160 MIMAT0004811 hsa-miR-33b* 1877 E4F1 ccCGACGUGACGGCUCC-GUGAc |: |||||| ||| |||| aaGUGGCACUGAACAGGCCACUg 2 21 212 234 [hg19:16:2285447-2285469:+] 0.7306 128 0 -23.65 -0.4591 MIMAT0003335 hsa-miR-657 1877 E4F1 ggaucucucccACUCUUGGACGg ||||||||||| acaauaaaacaUGAGAACCUGC- 2 13 148 169 [hg19:16:2285721-2285742:+] 0.4815 160 7 -20.66 -0.9183 MIMAT0003335 hsa-miR-657 1877 E4F1 ggaucucucccACUCUUGGACGg ||||||||||| acaauaaaacaUGAGAACCUGC- 2 13 486 507 [hg19:16:2285721-2285742:+] 0.4815 160 7 -20.66 -0.8491 MIMAT0003888 hsa-miR-766 1877 E4F1 cgacuCCGACACCC---CGACCUCa | | | ||| ||||||| gccucGCCGGAGGGCCAGCUGGAGg 2 18 294 318 [hg19:16:2285529-2285553:+] 0.7176 144 7 -19.23 -0.3341 MIMAT0004908 hsa-miR-220b 1877 E4F1 uucacagucugugCCACCACc ||||||| ------------aGGUGGUGc 2 9 1 9 [hg19:16:2285236-2285244:+] 0.7184 140 7 -13.69 -0.1873 MIMAT0004985 hsa-miR-942 1877 E4F1 guGUACCGGUUUUGUCUCUUCu | ||||| :::||||||| ugCCUGGCC-UGGUAGAGAAGa 2 21 68 88 [hg19:16:2285641-2285661:+] 0.3954 158 7 -24.54 -0.1950 MIMAT0004985 hsa-miR-942 1877 E4F1 guGUACCGGUUUUGUCUCUUCu | ||||| :::||||||| ugCCUGGCC-UGGUAGAGAAGa 2 21 406 426 [hg19:16:2285641-2285661:+] 0.3954 158 7 -24.54 -0.1608 MIMAT0005580 hsa-miR-1227 1877 E4F1 gacCCCUUUUCCCACCGUGc |||| || ||||||| gcaGGGACAA--GUGGCACu 2 18 204 221 [hg19:16:2285439-2285456:+] 0.7436 154 7 -17.03 -0.2738 MIMAT0005872 hsa-miR-1207-3p 1877 E4F1 cuuuaCUCCCGGUCGACu |||||||||||| cgccgGAGGGCCAGCUGg 2 14 298 315 [hg19:16:2285533-2285550:+] 0.7176 165 7 -29.67 -0.1049 MIMAT0005939 hsa-miR-1281 1877 E4F1 cccUCUCCU-CCUCCGCu | |||| ||||||| ggcACAGGAUGGAGGCGc 2 15 90 107 [hg19:16:2285663-2285680:+] 0.3954 153 7 -21.82 -0.1332 MIMAT0005939 hsa-miR-1281 1877 E4F1 cccUCUCCU-CCUCCGCu | |||| ||||||| ggcACAGGAUGGAGGCGc 2 15 428 445 [hg19:16:2285663-2285680:+] 0.3954 153 7 -21.82 -0.1088 MIMAT0005954 hsa-miR-720 1877 E4F1 accuCCGG-GGUCGCUCu |||| :||||||| ccucGGCCAUCAGCGAGg 2 14 166 183 [hg19:16:2285401-2285418:+] 0.7436 152 7 -23.66 -0.3614 MIMAT0007889 hsa-miR-1914 1877 E4F1 gucuucacccggcCCGUGUCCc |||||||| ugguagagaagauGGCACAGGa 2 10 77 98 [hg19:16:2285650-2285671:+] 0.3954 145 7 -19.28 -0.2708 MIMAT0007889 hsa-miR-1914 1877 E4F1 gucuucacccggcCCGUGUCCc |||||||| ugguagagaagauGGCACAGGa 2 10 415 436 [hg19:16:2285650-2285671:+] 0.3954 145 7 -19.28 -0.2259 MIMAT0007889 hsa-miR-1914 1877 E4F1 guCUUCACCCGGCCCGU-GUCCc | || | :|| ||| |||| guGCAGCAGAUCGUGCACCAGGc 2 21 6 28 [hg19:16:2285241-2285263:+] 0.7184 120 0 -18.23 -0.1703 MIMAT0014994 hsa-miR-3130-3p 1877 E4F1 aaugGGUCAGAGGCCACGUCg |||| : ||||||| agggCCAGCUGGAGGUGCAGa 2 18 304 324 [hg19:16:2285539-2285559:+] 0.7176 149 7 -22.34 -0.4369 MIMAT0014994 hsa-miR-3130-3p 1877 E4F1 aaugggucagagGCCACGUCg :||||||| ---------aggUGGUGCAGc 2 10 1 12 [hg19:16:2285236-2285247:+] 0.7184 141 7 -17.55 -0.2516 MIMAT0015018 hsa-miR-3146 1877 E4F1 gguaagaaAGAUAG--GAUCGUAc || ||| ||||||| gcagacggUC-AUCGUCUAGCAUg 2 15 320 342 [hg19:16:2285555-2285577:+] 0.7176 143 7 -18.27 -0.4343 MIMAT0015029 hsa-miR-3155 1877 E4F1 ucaAG-GGUGACG--UCUCGGACc || |||| | |||||||| ccaUCGCCACCCCCGAGAGCCUGa 2 19 118 141 [hg19:16:2285353-2285376:+] 0.7436 152 7 -21.08 -0.5481 MIMAT0015066 hsa-miR-3065-5p 1877 E4F1 aggucGUAGUCACUAA-AACAACu ||| || | || |||||| guguaCAUAAGAGUUUCUUGUUGc 2 19 121 144 [hg19:16:2285694-2285717:+] 0.4365 130 6 -8.77 -0.9619 MIMAT0015066 hsa-miR-3065-5p 1877 E4F1 aggucGUAGUCACUAA-AACAACu ||| || | || |||||| guguaCAUAAGAGUUUCUUGUUGc 2 19 459 482 [hg19:16:2285694-2285717:+] 0.4365 130 6 -8.77 -0.8959 MIMAT0016860 hsa-miR-4307 1877 E4F1 ccuuUGUCCUUUUUUGUAa ||| | ||||||| cuuuACA--AUAAAACAUg 2 16 144 160 [hg19:16:2285717-2285733:+] 0.4815 144 7 -4.97 -0.5177 MIMAT0016860 hsa-miR-4307 1877 E4F1 ccuuUGUCCUUUUUUGUAa ||| | ||||||| cuuuACA--AUAAAACAUg 2 16 482 498 [hg19:16:2285717-2285733:+] 0.4815 144 7 -4.97 -0.4486 MIMAT0016887 hsa-miR-4325 1877 E4F1 agUGACUCUGUUCA-CGUu :| |:||||||| ||| ggGCAGGGACAAGUGGCAc 2 17 202 220 [hg19:16:2285437-2285455:+] 0.7436 128 0 -16.18 -0.2846 MIMAT0016893 hsa-miR-4267 1877 E4F1 caCGGUGGCUCGACCu || : |||||||| auGCAGGCGAGCUGGu 2 15 274 289 [hg19:16:2285509-2285524:+] 0.7176 150 7 -20.99 -0.1446 MIMAT0016909 hsa-miR-4279 1877 E4F1 cuucggccCUCCUCUc ||||||| ccauggacGAGGAGAc 2 9 64 79 [hg19:16:2285299-2285314:+] 0.7184 140 7 -13.79 -0.1224 MIMAT0016921 hsa-miR-4290 1877 E4F1 cuCCCU-UCUUUCCUCC-CGu || | ||:| ||||| || auGGCACAGGAUGGAGGCGCc 2 18 88 108 [hg19:16:2285661-2285681:+] 0.3954 120 0 -15.23 -0.1233 MIMAT0016921 hsa-miR-4290 1877 E4F1 cuCCCU-UCUUUCCUCC-CGu || | ||:| ||||| || auGGCACAGGAUGGAGGCGCc 2 18 426 446 [hg19:16:2285661-2285681:+] 0.3954 120 0 -15.23 -0.1006 MIMAT0000084 hsa-miR-27a 1877 E4F1 cgcCUUGAAUCGGUGACACUu |||| :|||||||||| acuGAAC-AGGCCACUGUGAc 2 19 219 238 [hg19:16:2285454-2285473:+] 0.7306 164 7 -22.70 -0.1529 MIMAT0000244 hsa-miR-30c 1877 E4F1 cgACUCUCACA-UCCUAC-AAAUGu | ||||| | | || ||||| caUAAGAGUUUCUUGUUGCUUUACa 2 22 126 150 [hg19:16:2285699-2285723:+] 0.4775 120 0 -10.51 -1.1460 MIMAT0000244 hsa-miR-30c 1877 E4F1 cgACUCUCACA-UCCUAC-AAAUGu | ||||| | | || ||||| caUAAGAGUUUCUUGUUGCUUUACa 2 22 464 488 [hg19:16:2285699-2285723:+] 0.4775 120 0 -10.51 -1.1017 MIMAT0000419 hsa-miR-27b 1877 E4F1 cguCUUGAAUCGGUGACACUu |||| :|||||||||| acuGAAC-AGGCCACUGUGAc 2 19 219 238 [hg19:16:2285454-2285473:+] 0.7306 164 7 -23.77 -0.1529 MIMAT0000424 hsa-miR-128 1877 E4F1 uuucuCUGGCCAAGUGACACu || | | ||||||| gcacuGAACAGGCCACUGUGa 2 17 217 237 [hg19:16:2285452-2285472:+] 0.7306 148 7 -15.89 -0.4227 MIMAT0004602 hsa-miR-125a-3p 1877 E4F1 ccgaggguUCUUGGAGUGG-ACa ||||| ||||| || caucgugcAGAACGUCACCAUGg 2 15 47 69 [hg19:16:2285282-2285304:+] 0.7184 126 0 -17.96 -0.4287 MIMAT0000773 hsa-miR-346 1877 E4F1 ucUCCGUCCGUACGCC-CGUCUGu :||| || | || |||||| gaGGGCCAGCUGGAGGUGCAGACg 2 22 303 326 [hg19:16:2285538-2285561:+] 0.7176 125 6 -25.64 -0.1509 MIMAT0003393 hsa-miR-425 1877 E4F1 aguUGCCCUCACUAGCACAGUAa || | : || ||||||| gccACUGUGACCAUGGUGUCAUc 2 21 228 250 [hg19:16:2285463-2285485:+] 0.7306 148 7 -12.80 -0.5017 MIMAT0003164 hsa-miR-544 1877 E4F1 cuUGAACGAUUUUUACGUCUUa || | | | :||||||| ccACCAGAUCAUCGUGCAGAAc 2 21 38 59 [hg19:16:2285273-2285294:+] 0.7184 148 7 -8.79 -0.3913

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G031919 E4F1 Homo sapiens 1877

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End E4F1; E4F 1 168 100 96.131 + chr16 2285573 2285741 E4F1; E4F 169 170 5.212 96.131 + chr16 2285741 2285743

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile E4F1 ebv-miR-BART12 beg:83 end:99 pic:3' TTGGTGTGGTTTGTGGTGTCCT 5'& |.|.. ||||||| &5' ---------AGATGGCACAGGA 3' E4F1 hsa-miR-1914 beg:80 end:98 pic:3' GTCTTCACCCGGCCCGTGTCCC 5'& ||||| |||||||| &5' -AGAAGAT-----GGCACAGG- 3' E4F1 hsa-miR-1208 beg:102 end:124 pic:3' AGGCGGACAGA--CTTGTCACT 5'& |||| |.|||||| &5' --CGCCCCAAGACGGACAGTG- 3' E4F1 hsa-miR-1208 beg:64 end:85 pic:3' AGGCGGACA-GACT-TGTCACT 5'& |.||||| |||. | || &5' -CTGCCTGGCCTGGTAGAG--- 3' E4F1 hsa-miR-1231 beg:8 end:30 pic:3' CGTCGACAGG-CGGGTCTGTG 5'& ||.| |||| | ||.|.|| &5' GCGGG-GTCCTGGCCGGGCA- 3' E4F1 hsa-miR-1233 beg:19 end:40 pic:3' GAC-GCCC--TCCTGTCCCGAGT 5'& | |||| .||||||||| &5' --GCCGGGCAGGGACAGGGC--- 3' E4F1 hsa-miR-1236 beg:23 end:45 pic:3' GACC-TCTCTGTTCCCCTTCTCC 5'& || ||.||||.|| ||||| &5' --GGCAGGGACAGGGC--AGAGG 3' E4F1 hsa-miR-1274a beg:12 end:35 pic:3' ACCG----CGGACTTGTCCCTG 5'& ||. ||| |..||||||| &5' -GGTCCTGGCC-GGGCAGGGAC 3' E4F1 hsa-miR-1274b beg:12 end:34 pic:3' ACCG---CGGGCTTGTCCCT 5'& ||. | |||..|||||| &5' -GGTCCTGGCCGGGCAGGGA 3' E4F1 hsa-miR-1282 beg:22 end:46 pic:3' TTCGTCTTT-TTCCGTTTGCT 5'& ..|||| | |.||||.| || &5' GGGCAGGGACAGGGCAGAGGA 3' E4F1 hsa-miR-1308 beg:45 end:67 pic:3' GGTGACTT----GGTGGGTACG 5'& | ||||. |||||||||| &5' -CTCTGAGCGCCCCACCCATGC 3' E4F1 hsa-miR-136 beg:93 end:104 pic:3' AGGTAGTAGTTTTGTTTACCTCA 5'& ..|||||| &5' --------------GGATGGAG- 3' E4F1 hsa-miR-18astar beg:22 end:42 pic:3' GGTCT-TCCTCGTGAATCCCGTCA 5'& ||.|. ||| | ||||||| &5' CCGGGCAGGGAC----AGGGCAG- 3' E4F1 hsa-miR-1910 beg:18 end:40 pic:3' TCCG--CCGTCCGTGTCCTGACC 5'& ||| |||||| |||||.| &5' -GGCCGGGCAGGGACAGGGC--- 3' E4F1 hsa-miR-1913 beg:18 end:43 pic:3' ACCG--TCGTCGCCTCCCCCGTCT 5'& ||| .|||| ||| ||||||| &5' -GGCCGGGCAG-GGACAGGGCAGA 3' E4F1 hsa-miR-1915star beg:12 end:39 pic:3' CCGGGCCCG--TCGTTCC-GTTCCA 5'& ||.|| ||| .|||.|| ||.|| &5' GGTCCTGGCCGGGCAGGGACAGGG- 3' E4F1 hsa-miR-196a beg:146 end:168 pic:3' GGGTTGT--TGTACTTTGATGGAT 5'& |||.| ||||||.| ||||. &5' --CAATAAAACATGAGA--ACCTG 3' E4F1 hsa-miR-196astar beg:129 end:146 pic:3' GAGTCCGTCAAAGAACAACGGC 5'& |||||||||||||. &5' -------AGTTTCTTGTTGCT- 3' E4F1 hsa-miR-1972 beg:58 end:80 pic:3' ACTCGGTGAC-ACGGACCGGACT 5'& |||. |||||||||||. &5' ----CCATGCCTGCCTGGCCTGG 3' E4F1 hsa-miR-1976 beg:23 end:45 pic:3' TGTCGTTCCT--CCCGTCCTCC 5'& .|||.||| ||||| |||| &5' --GGCAGGGACAGGGCA-GAGG 3' E4F1 hsa-miR-202star beg:77 end:99 pic:3' GTTTCTTCATATACGTATCCTT 5'& .|.||||| ||. ||| |||| &5' TAGAGAAG-ATG-GCACAGGA- 3' E4F1 hsa-miR-2113 beg:76 end:98 pic:3' CACTGTCTCGGT--TCGTGTTTA 5'& || |||| .|||||.. &5' -TGGTAGAGAAGATGGCACAGG- 3' E4F1 hsa-miR-28-5p beg:128 end:138 pic:3' GAGTTATCTGACACTCGAGGAA 5'& |||.|.||| &5' -------------GAGTTTCTT 3' E4F1 hsa-miR-296-5p beg:90 end:110 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||||||| |||| |||| &5' ACAGGATGGAGGC---GCCC- 3' E4F1 hsa-miR-3115 beg:48 end:65 pic:3' TGGTTGATCATTTGGGTATA 5'& |.| ||||||. &5' ---AGCGCCCC-ACCCATG- 3' E4F1 hsa-miR-3151 beg:41 end:62 pic:3' TGGACT-AGGGTAACGGGGTGG 5'& || ||. | |||||||| &5' ----GACTCTGAGCGCCCCACC 3' E4F1 hsa-miR-3176 beg:9 end:27 pic:3' GGCCATCAGGGTCCGGTCA 5'& ||| .||||. ||||.| &5' -CGG-GGTCCT-GGCCGG- 3' E4F1 hsa-miR-3181 beg:57 end:81 pic:3' GGCCGCGGCTC--CCGGGCTA 5'& || .||| ||||.|.| &5' CCCATGCCTGCCTGGCCTGGT 3' E4F1 hsa-miR-331-5p beg:47 end:69 pic:3' CCTA--GGGACCCTGGTATGGATC 5'& || ||| ||||.|||. &5' -GAGCGCCCCAC--CCATGCCTG- 3' E4F1 hsa-miR-339-5p beg:8 end:34 pic:3' GCACTCGAGGACCT-CCTGTCCCT 5'& | |.| |||||| ||.|||||| &5' -GCGGGGTCCTGGCCGGGCAGGGA 3' E4F1 hsa-miR-375 beg:101 end:122 pic:3' AGTGCGCTCGGC-TTGCTTGTTT 5'& ||| || .|||.|||. &5' ----GCGCCCCAAGACGGACAG- 3' E4F1 hsa-miR-4253 beg:51 end:69 pic:3' TGGGGGACCTGTACGGGA 5'& .|||| ||||||. &5' GCCCCACC--CATGCCT- 3' E4F1 hsa-miR-4260 beg:93 end:114 pic:3' ACCCTGAGGTA-CGGGGTTC 5'& |||. . |||||||| &5' --GGATGGAGGCGCCCCAAG 3' E4F1 hsa-miR-4312 beg:18 end:40 pic:3' ACC--CCTGTCCTTGTTCCGG 5'& || ||.||||.|||.||| &5' -GGCCGGGCAGGGACAGGGC- 3' E4F1 hsa-miR-493star beg:108 end:128 pic:3' TTACTTTC-GGATGGTACATGTT 5'& ||| | || .|||||| &5' -----AAGACGGACAGTGTACA- 3' E4F1 hsa-miR-502-5p beg:15 end:34 pic:3' ATCGTGGGTCTA-TCGTTCCTA 5'& |. || | .|||.||| &5' --GT-CCTGGCCGGGCAGGGA- 3' E4F1 hsa-miR-564 beg:62 end:81 pic:3' CGGAC-GACTGTGGCACGGA 5'& ||||| |||.| |.| |. &5' GCCTGCCTGGC-CTG-GT-- 3' E4F1 hsa-miR-581 beg:114 end:133 pic:3' TGACTAGATCTCTTGTGTTCT 5'& || | || | |||.|||| &5' ---GA-C-AGTGTACATAAGA 3' E4F1 hsa-miR-597 beg:74 end:96 pic:3' TGTCACCAGTAGCTC----ACTGTGT 5'& |||| ||| ||.|||| &5' ----TGGTA---GAGAAGATGGCACA 3' E4F1 hsa-miR-599 beg:79 end:97 pic:3' CAAACTATTTGACTGTGTTG 5'& || ||.||||. &5' ----GAGAAGATGGCACAG- 3' E4F1 hsa-miR-802 beg:128 end:146 pic:3' TGTTCCTACTTAGA-AACAATGAC 5'& ||.|.| |||||.|| &5' --------GAGTTTCTTGTTGCT- 3' E4F1 hsa-miR-92a-2star beg:41 end:63 pic:3' CATTACGTTGT--TTA--GGGGTGGG 5'& .|| .| |||||||| &5' -------GACTCTGAGCGCCCCACCC 3' E4F1 hsa-miR-942 beg:66 end:89 pic:3' GTGTACCGGTTTTGTCTCTTCT 5'& .| ||||| .|||||||| &5' -GCCTGGCCTGG-TAGAGAAGA 3' E4F1 hsv1-miR-H14-3p beg:76 end:98 pic:3' CAGCGTG-CGCGGGCCGTGTCT 5'& |.| | .|||||||. &5' ---GTAGAGAAGATGGCACAGG 3' E4F1 hsv1-miR-H5-3p beg:32 end:52 pic:3' GGCCTCCCAAA-CCTAGAGACTG 5'& |||| ||| |||||| &5' ----AGGGCAGAGGA-CTCTGA- 3' E4F1 hsv2-miR-H10 beg:50 end:67 pic:3' GGC-GGGTGGGGGCGTGGG 5'& || ||||||| .|| |. &5' -CGCCCCACCCATGC-CT- 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 E4F1; E4F hsa-miR-566 102 109 CAAC-------------------------CCUAGUGUCCGCGGG |||| : |||||||| CUGCCUGGCCUGGUAGAGAAGAUGGCACAGGAUGG-AGGCGCCCC E4F1; E4F hsa-let-7b 53 79 UUGGUGUGU---UGGAUGA--UGGAGU :|| ||| :|||:| :||| CGCCCCACCCAUGCCUGCCUGGCCUG- E4F1; E4F hsa-miR-100 2 17 GUGUUCAAGC-CUAGAUGCCCAA :| |:|||:|||| -------AUGAGGUCUGCGGGG- E4F1; E4F hsa-miR-10a 2 19 GUGUUUAAGC-CUAGAUGUCCCAU :| |:|||:|:|||| -------AUGAGGUCUGCGGGGUC E4F1; E4F hsa-miR-10b 5 19 UGUUUAAGCCAAGAUGUCCCAU || |||:|:|||| -------AGG-UCUGCGGGGUC E4F1; E4F hsa-miR-124a 36 74 ACCGUAA----------GUGG--------CGCACGGAAUU |||| |:|| || ||||| GGGCAGAGGACUCUGAGCGCCCCACCCAUGCCUGCCUG-- E4F1; E4F hsa-miR-125b 1 35 AGUGUUCAA----UCCCAGA--------GUCCCU- ||::|| :||||| |||||| -CAUGAGGUCUGCGGGGUCCUGGCCGGGCAGGGAC E4F1; E4F hsa-miR-127 20 53 -UCGGUUCGAGUCUG-CCU--------AGGCU- :|||::|| :||| ||: ||:|| UGGCCGGGCAGGGACAGGGCAGAGGACUCUGAG E4F1; E4F hsa-miR-147 37 66 -CGUCU--------UCGUAAAGGUGUGUG- ||||| |||: |||| ||: GGCAGAGGACUCUGAGCGCC-CCACCCAUG E4F1; E4F hsa-miR-18a* 12 32 UCUUCCUCGUGAAU--CCCGUCA ||:|: || |||||| ---CGGGGUCCUGGCCGGGCAGG E4F1; E4F hsa-miR-193a 2 28 GAC-CCUGAAA---CAU--CCGGUCAA || || || || ||||:| AUGAGGUCUGCGGGGUCCUGGCCGGG- E4F1; E4F hsa-miR-193b 24 46 UUUCG-CCCUGAAACUCCCGG--UCAA ::|| ||||| ||||| :| CGGGCAGGGAC----AGGGCAGAGGA- E4F1; E4F hsa-miR-205 72 106 GUCUGAGGCCA---------------CCUUACUUCCU |:| |:||| || |||:||| -UGGC-CUGGUAGAGAAGAUGGCACAGG-AUGGAGGC E4F1; E4F hsa-miR-214 63 82 GACGGACAGACACGGACGACA |||||| ||| ||||| | AUGCCUGCCUG-GCCUGGUA- E4F1; E4F hsa-miR-28 38 60 GAGUUAUCUGACACUCGA--GGAA ||: :|||| ||||| || -GCAGAGGACUCUGAGCGCCCCA- E4F1; E4F hsa-miR-296 92 111 -UGUCCUAACUCCCCCCCGGGA ||||||| |||| |||| CACAGGAUGGAGGC---GCCCC E4F1; E4F hsa-miR-299-3p 49 66 -UUCGCCAAAUGGUAGGGUGUAU :|||| ||| ||||: UGAGCGCC---CCA-CCCAUG-- E4F1; E4F hsa-miR-324-3p 7 34 -GGUCGUCGU-GGAC---CCCGUCACC- :| ||:| : |||| |||||| || GUCUGCGGGGUCCUGGCCGGGCAG-GGA E4F1; E4F hsa-miR-326 18 46 -GACC--UCCUUCCC-GG---GUCUCC- |||| :|| |||| | |||||| CCUGGCCGGGCAGGGACAGGGCAGAGGA E4F1; E4F hsa-miR-328 10 46 -UGCCUU--------CCCGUCUCU--CCCGG--UC- :|||:: ||||||:|| |||| :| UGCGGGGUCCUGGCCGGGCAGGGACAGGGCAGAGGA E4F1; E4F hsa-miR-331 7 41 AAGA--UCCUAU--CCGGGUC--------CCCG- ||| :||:| |||| :| |||| GUCUGCGGGGUCCUGGCCGGGCAGGGACAGGGCA E4F1; E4F hsa-miR-340 89 120 -CCGA----UAUUUCAUUGAC--UCUGCCU- ||| ||::|| :| ||||||| UGGCACAGGAUGGAGGCGCCCCAAGACGGAC E4F1; E4F hsa-miR-346 24 46 UCUCCGUCCGUACGCCCGUCUGU- :|||||| | ||||||| : -CGGGCAGGGACA-GGGCAGAGGA E4F1; E4F hsa-miR-370 11 33 GGUCCAAGGUG-GGGUCGUCCG |:|| ||| || :||||| GCGGGGUCCUGGCCGGGCAGGG E4F1; E4F hsa-miR-371 90 109 -UGUGAGUUUUCUACCGCCGUG- :||| |:||||| |||:| GGCAC----AGGAUGGAGGCGCC E4F1; E4F hsa-miR-378 10 34 UGUGUCCU-GGACC--UCAGUCCUC :|:||: ||||| :| ||||: -UGCGGGGUCCUGGCCGGGCAGGGA E4F1; E4F hsa-miR-423 8 30 -GACUCCCCGGAGUCUGGCUCGA ||| ||||:| | |:|||:|| UCUGCGGGGUC-CUGGCCGGGCA E4F1; E4F hsa-miR-454-5p 26 46 -CGUCUCUGUUAUAACUAUCCCA ||||:||||: ||| GGCAGGGACAGGGCAG--AGGA- E4F1; E4F hsa-miR-455 86 109 GCUACA---UCAGGUUUCCGUGUAU |||| || ::||||:| AGAUGGCACAGGAUGGAGGCGCC-- E4F1; E4F hsa-miR-484 23 53 UAGCCCUCCCCUGACUCG--------GACU- |||| ||||| |:|| |||| -CCGGGCAGGGACAGGGCAGAGGACUCUGAG E4F1; E4F hsa-miR-486 11 40 GAGCCCCG---UCGA---GUCA-UGUCCU- |||||: :|| ||| |||||: -GCGGGGUCCUGGCCGGGCAGGGACAGGGC E4F1; E4F hsa-miR-490 5 29 GUCGUA--CCUCAGGA--GGUCCAAC :|: ||:||||| ||:|| AGGUCUGCGGGGUCCUGGCCGGGC-- E4F1; E4F hsa-miR-491 22 62 AGGA--GUACCU-UCCC----------AA----GGGGUGA || || ||| |||| | |||||| GCCGGGCAGGGACAGGGCAGAGGACUCUGAGCGCCCCACC E4F1; E4F hsa-miR-492 3 33 -UUCUUAGAA----CAGGG------CGUCCAGGA :|| :||| ||||: ||||| UGAG-GUCUGCGGGGUCCUGGCCGGGCAGGG--- E4F1; E4F hsa-miR-500 11 42 -GUCUUAGGAACGG---GUCCA-----CGUA |:| |||| ||| |||| ||| GCGGGGUCCUGGCCGGGCAGGGACAGGGCAG E4F1; E4F hsa-miR-501 18 47 AGAGUGG---GUCCCUGU-----UUCCUAA || :|| |||||||| :|||| CCUGGCCGGGCAGGGACAGGGCAGAGGAC- E4F1; E4F hsa-miR-502 13 35 AUCGUGGGUCUA-UCGUUCCUA :| ||::| :|||:||| GGGGUCCUGGCCGGGCAGGGAC E4F1; E4F hsa-miR-504 12 41 UAUCUCA---------CGUCUG-GUCCCAGA :|:|| ||||: ||||| | -CGGGGUCCUGGCCGGGCAGGGACAGGG-CA E4F1; E4F hsa-miR-515-3p 103 128 -UGCGAGGUUU--UCU-UC-CGUGAG :||| ||||: :|| || |:|| GGCGCCCCAAGACGGACAGUGUACA- E4F1; E4F hsa-miR-518a 75 109 AGGUCGUUUC---------------CCUUCGCGAAA |::|:|:|| |||:|||| CCUGGUAGAGAAGAUGGCACAGGAUGGAGGCGCC-- E4F1; E4F hsa-miR-518e 90 109 -UGUGAGACUUCCCUUCGCGAAA :||| |:| |||:|||| GGCACA--GGAUGGAGGCGCC-- E4F1; E4F hsa-miR-524 38 58 UGAGGUUUCCC----UUCGCGGAAG ||:||| :|||||| ---GCAGAGGACUCUGAGCGCCC-- E4F1; E4F hsa-miR-525* 90 110 -CGAGAUUUCCCUUCGCGGAAG || | ::| |||:||||| GGCACAGGAUGGAGGCGCCC-- E4F1; E4F hsa-miR-526b 92 116 UUGUCUUUCA--CGAAGGGAGUUCUC ||||:| | || ||| ||||| CACAGGAUGGAGGCG-CCC-CAAGAC E4F1; E4F hsa-miR-554 18 41 UGACCGACUCAGUCCUGA--UCG- ||||| |:| ||||: :|| CCUGGCCGGG-CAGGGACAGGGCA E4F1; E4F hsa-miR-564 64 82 -CGGACG-ACUGUGGCACGGA |||||| ||:| |:| |: UGCCUGCCUGGC-CUG-GUA- E4F1; E4F hsa-miR-566 95 111 CAACCCUAGUGUCCGCGGG- |||| : |||||||| ---AGGAUGG-AGGCGCCCC E4F1; E4F hsa-miR-572 13 36 ACCCGGUGGCGGCUCG--CCUG- |||:| : ||||:|| |||| GGGGUCCUGGCCGGGCAGGGACA E4F1; E4F hsa-miR-574 29 56 CACCCACACACGU--------ACUCGCAC ||| ||| |||||| -AGGGACAGGGCAGAGGACUCUGAGCGC- E4F1; E4F hsa-miR-581 75 100 UGACUAGAUCUCU-----UGUGUUCU- |||:| ||||| :||||:|| CCUGGU--AGAGAAGAUGGCACAGGAU E4F1; E4F hsa-miR-585 88 111 -AUCGUA---UGUCUAUGCGGGU |:||| |::|| :||||| AUGGCACAGGAUGGAGGCGCCCC E4F1; E4F hsa-miR-593 47 79 CGACUCGU--------UACGGACCGACCACGGA- ||||||: ||||||| ||| |||| UCUGAGCGCCCCACCCAUGCCUGCCUG--GCCUG E4F1; E4F hsa-miR-596 11 33 GGGCUCC----UCGGCCCGUCCGAA ||:|| :|||||||||| -GCGGGGUCCUGGCCGGGCAGGG-- E4F1; E4F hsa-miR-608 49 74 UGCCUCGACAGGGU---UGUGGUGGGGA |||| |||| |::|| ||: --UGAGCGC-CCCACCCAUGCCUGCCUG E4F1; E4F hsa-miR-611 7 25 CAGUCUGGGGCUCCCCAGGAGCG- :|:| |||||||| || ------GUCUGCGGGGUCCUGGCC E4F1; E4F hsa-miR-612 40 77 -UUCCUCGAGUCUU-CGGG----------ACGGGUCG- :|||| ||| ||: |||| ||||::|| AGAGGA-CUCUGAGCGCCCCACCCAUGCCUGCCUGGCC E4F1; E4F hsa-miR-615 12 35 UCUCCCU---CUGGGUCCGAGCCU- :||| |: ||:||| ||| -CGGGGUCCUGG-CCGGGCAGGGAC E4F1; E4F hsa-miR-621 4 26 -UCCAUUCGCGACAACGAUCGG- |||| ||| || ||:||| GAGGUCUGCGGGGUC-CUGGCCG E4F1; E4F hsa-miR-631 2 30 CGACUCCAGAC---------CCGGUCCAGA ||||||||| ||||:|| | -AUGAGGUCUGCGGGGUCCUGGCCGGG-CA E4F1; E4F hsa-miR-636 8 37 -GACGCCCGC---CCUGCUCGUUCGUGU- ||||||| || ||:|||:| ||| UCUGCGGGGUCCUGGCCGGGCAGGGACAG E4F1; E4F hsa-miR-637 37 60 UGCGUCUC---GGGCUUUCGGGGGUCA |||||| :|:|| ||||| -GGCAGAGGACUCUGAGCGCCCCA--- E4F1; E4F hsa-miR-639 10 35 -UGUCGCGAGCGUUGG--CGUCGCUA :|:| |: | :::|| |||| || UGCGGGGUCC-UGGCCGGGCAGGGAC E4F1; E4F hsa-miR-644 45 62 CGAGAUUCUUUCGGUGUGA ||||:|| ||| ||| ACUCUGAGC--GCCCCACC E4F1; E4F hsa-miR-650 45 74 CAGGACUCUCGCG--------ACGGA-GGA- || |||||| ||||| ||| --ACUCUGAGCGCCCCACCCAUGCCUGCCUG E4F1; E4F hsa-miR-661 21 42 UGCGCGUCCGGUCUCUGGGUCCGU- || |:|| |||:||| :|||| -GGC-CGGG-CAGGGACA-GGGCAG E4F1; E4F hsa-miR-663 5 26 CGCCAGGGCGCCGCGGGG-CGGA ||| |:|||| |:||: ||| -AGGU-CUGCGGGGUCCUGGCCG E4F1; E4F hsa-miR-668 13 37 CAUCACCC-GGCUCGGCUCA---CUGU- ||| || :||||:| |||| ----GGGGUCCUGGCCGGGCAGGGACAG E4F1; E4F hsa-miR-766 2 28 CGACUCC-GACACCCCG--ACC--UCA ||||| ||| ||||: ||| :| -AUGAGGUCUGCGGGGUCCUGGCCGGG E4F1; E4F hsa-miR-767-3p 3 33 UCUUUGGUA-CCCCAUA-----CUCGUCU- || :| ||||| |:||||: UGAGGUCUGCGGGGUCCUGGCCGGGCAGGG E4F1; E4F hsa-miR-769-5p 25 50 -UCGAGUCUUGG---GUCUCCAGAGU :|| :|:|| |||||| ||| GGGCA-GGGACAGGGCAGAGGACUCU E4F1; E4F hsa-miR-770-5p 14 40 ACCGGGACUGUGCA----CCAUGACCU- ||:||||:| || || || ||: GGGUCCUGGC-CGGGCAGGG-ACAGGGC E4F1; E4F hsa-miR-92 23 43 -GUCCGGCCCUGUUCACGUUAU |:||| ||||||:| |||: CCGGGCAGGGACAGG-GCAGA- E4F1; E4F hsa-miR-99a 1 29 GUGUUCUAG----CCUAGAU---GCCCAA ||::||:|| ||:|| |||| CAUGAGGUCUGCGGGGUCCUGGCCGGGC- E4F1; E4F hsa-miR-99b 10 34 GCGUUCCAG--CCAAGAUG-CCCAC ||::|||| || :| ||| UGCGGGGUCCUGGCCGGGCAGGGA- E4F1; E4F hsa-let-7b 55 74 uuGGUGUGUUGGAUGAUGGAgu |||| || | ||:||| ccCCACCCATGC--CTGCCTgg E4F1; E4F hsa-miR-100 1 17 guguucaagcCUAGAUGCCCaa |:|||:|||| -----catgaGGTCTGCGGGgt E4F1; E4F hsa-miR-10a 1 18 guguuuaagcCUAGAUGUCCCAu |:|||:|:|||| -----catgaGGTCTGCGGGGTc E4F1; E4F hsa-miR-10b 1 18 uguuUAAGCCAAGAUGUCCCAu || || |||:|:|||| ---cATGAGG-TCTGCGGGGTc E4F1; E4F hsa-miR-124a 51 75 accguaaGUGG---CGCACGGAauu |||| || ||||| agcgcccCACCCATGCCTGCCTggc E4F1; E4F hsa-miR-127 1 21 ucgguUCGAGUCUGCCUAGGcu || || | ||:||| -catgAGGTCTGCGGGGTCCtg E4F1; E4F hsa-miR-147 38 64 CGUCUUCGUAAA-------GGUGUGUg |||||:| | | |||| || GCAGAGGACTCTGAGCGCCCCACCCAt E4F1; E4F hsa-miR-18a* 26 42 uCUUCCUCGUGAAUCCCGUCa | ||| | || ||||||| gGCAGG-G-AC--AGGGCAGa E4F1; E4F hsa-miR-193a 12 28 GACCCUGAAACAUCCGGUCaa | ||| | | ||||:| CGGGGTCCT----GGCCGGgc E4F1; E4F hsa-miR-193b 8 28 uuuCGCCCUGAAACUCCCGGUCaa |||||:: | ||||:| tctGCGGGGTCCT---GGCCGGgc E4F1; E4F hsa-miR-205 88 105 guCUGAGGCCACCUUACUUCCu |:| | || |||:||| atGGCACAGG----ATGGAGGc E4F1; E4F hsa-miR-214 63 82 gACGGACAGACACGGACGAca |||||| ||| ||||| | aTGCCTGCCTG-GCCTGGTag E4F1; E4F hsa-miR-28 37 58 gaGUUAUCUGACACUCGAGGaa ||: :|||| ||||| || ggCAGAGGACTCTGAGCGCCcc E4F1; E4F hsa-miR-296 93 110 UGUCCUAACUCCCCCCCGGGa ||||||| || || |||| ACAGGAT---GGAGGCGCCCc E4F1; E4F hsa-miR-299-3p 39 63 uUCGCC--A-AAUGGUAGGGUGuau || || | | | |: ||||| cAGAGGACTCTGAGCGCCCCACcca E4F1; E4F hsa-miR-324-3p 23 44 GG-UCGUCGUGGACCCCGUCACC || :|||| : | |||||| || CCGGGCAGGGAC-AGGGCAGAGG E4F1; E4F hsa-miR-326 34 53 GACCUCCUUCCCGGGUCUCc | ||: :||| |:| ||| CAGGGCAGAGGACTCTGAGc E4F1; E4F hsa-miR-328 19 42 ugCCUUCCCGUCUC--UCCCGguc || ||||||:| ||||| ctGGCCGGGCAGGGACAGGGCaga E4F1; E4F hsa-miR-331 20 40 aagauCCUAUCCGGGUCCCcg ||: ||| ||||| tggccGGGCAGGGACAGGGca E4F1; E4F hsa-miR-339 12 39 aCUCGAGGACC-------UCCUGUCCCu |:| |||||| :|||||||| cGGGGTCCTGGCCGGGCAGGGACAGGGc E4F1; E4F hsa-miR-340 96 118 ccgauauuucauugacUCUGCCU ||||||| ggatggaggcgccccaAGACGGA E4F1; E4F hsa-miR-346 18 44 ucuCC-GUCCGUAC--G-CCCGUCUgu || |:|||| | | ||||||| cctGGCCGGGCAGGGACAGGGCAGAgg E4F1; E4F hsa-miR-371 87 107 ugugaGUUUUCUACCGCCGUG || |:||||| |||:| gatggCACAGGATGGAGGCGC E4F1; E4F hsa-miR-378 9 33 uguGUCCU-GGACC--UCAGUCCuc |:||: ||||| :| |||| ctgCGGGGTCCTGGCCGGGCAGGga E4F1; E4F hsa-miR-423 9 29 GACUCCCCGGAGUCUGGCUCGa ||| ||||:| | |:|||:|| CTGCGGGGTC-CTGGCCGGGCa E4F1; E4F hsa-miR-454-5p 22 39 CGUCUCUGUUAUAACUAUCCCa || | |:||: || |||| GCCG-GGCAG---GGACAGGGc E4F1; E4F hsa-miR-455 75 97 gcuaCAUCAGGUUU-CCGUGUau |||| |:| |||||| cctgGTAGAGAAGATGGCACAgg E4F1; E4F hsa-miR-484 33 57 uagCCC-UCCCCU--GACUCGgacu ||| || ||| |||||| acaGGGCAGAGGACTCTGAGCgccc E4F1; E4F hsa-miR-486 21 38 gaGCCCCGUCGAGUCAUGUCCu | |||||| | ||||| ggCCGGGCAG----GGACAGGg E4F1; E4F hsa-miR-490 9 30 GUCGUACCUCAGGA--GGUCCaac | || ||:||||| ||:|| CTGC--GGGGTCCTGGCCGGGcag E4F1; E4F hsa-miR-491 44 61 agGAGUACCUUCCCAAGGGGUGa ||| || || | |||||| gaCTC-TG--AGCG--CCCCACc E4F1; E4F hsa-miR-492 1 20 uucuuagaaCAGGGCG-UCCAGGA | :|:|| :|||||| ----catgaGGTCTGCGGGGTCCT E4F1; E4F hsa-miR-500 12 41 GUCUUAGGAACGG---------GUCCACGUa |:|::|||| ||| |||| ||| CGGGGTCCTGGCCGGGCAGGGACAGG-GCAg E4F1; E4F hsa-miR-501 18 47 aGAGUGG---GUCCCU-----GUUUCCUaa || :|| |||||| ||:|||| cCTGGCCGGGCAGGGACAGGGCAGAGGAct E4F1; E4F hsa-miR-502 17 34 aucgugGGUCUAUCGUUCCUa ||:| |||:||| tcctggCCGG---GCAGGGAc E4F1; E4F hsa-miR-504 1 19 uauCUCACGUCUGGUCCCAGa ||| | | |:||||| catGAGGTCTG--CGGGGTCc E4F1; E4F hsa-miR-515-3p 89 109 ugCGAGGUUUUCUUCCGUGag || | ::| |:||||:| tgGCACAGGATGGAGGCGCcc E4F1; E4F hsa-miR-518a 87 110 agguCGUUUC---CCUUCGCGaaa ||| || |||:|||| gatgGCACAGGATGGAGGCGCccc E4F1; E4F hsa-miR-518e 89 110 uguGAGACUUCCCUUCGCGaaa | | |:| |||:|||| tggCACAGGATGGAGGCGCccc E4F1; E4F hsa-miR-524 35 59 ugagGUUUCC----CUUCGCGGaag ||:||| :|||||| agggCAGAGGACTCTGAGCGCCcca E4F1; E4F hsa-miR-525* 91 111 CGAGAUUUCCCUUCGCGGaag || | ::| |||:||||| GCACAGGATGGAGGCGCCcca E4F1; E4F hsa-miR-564 44 68 CGGACGACU------GU-GGCACGGA | || |||| || || ||||| GACT-CTGAGCGCCCCACCCATGCCT E4F1; E4F hsa-miR-566 92 109 caacCCUAGUGUCCGCGGG |||| : |||||||| cacaGGAT-GGAGGCGCCC E4F1; E4F hsa-miR-574 28 56 caCCCACACACGU--------ACUCGCac ||| | ||| |||||| caGGGACAGGGCAGAGGACTCTGAGCGcc E4F1; E4F hsa-miR-585 89 110 AUCGU---AUGUCUAUGCGGGu |:||| |::|| :||||| TGGCACAGGATGGAGGCGCCCc E4F1; E4F hsa-miR-596 10 34 ggGCUCC----UCGGCCCGUCCgaa ||:|| :|||||||||| tgCGGGGTCCTGGCCGGGCAGGgac E4F1; E4F hsa-miR-608 33 64 UGCCUCGAC-----AGGGUUGU--GGUGGGga || |:|| | ||: |:|: |||||| ACAGGGCAGAGGACTCTGAGCGCCCCACCCat E4F1; E4F hsa-miR-611 2 23 cAGUCUGGGGCUCCCCAGGAGCG | ||: :|:| |||||||| || aTGAGG-TCTGCGGGGTCCTGGC E4F1; E4F hsa-miR-612 41 75 uUCCUCGAGUCUU-CG----------GGACGGGUCG |||| ||| ||: || ||||||::|| gAGGA-CTCTGAGCGCCCCACCCATGCCTGCCTGGC E4F1; E4F hsa-miR-615 3 27 uCUCC-----CUCUGGGUCCGAGCCu |||| |:|::|| ||| ||| tGAGGTCTGCGGGGTCCTGGC-CGGg E4F1; E4F hsa-miR-621 5 24 UCCAUUCGCGACAACGAUCGG |||| ||| | | ||:||| AGGTCTGCG-GGGTCCTGGCC E4F1; E4F hsa-miR-631 1 19 cgACUCCAGACCCGGUCCAGa |||||||| || :|||| caTGAGGTCT--GCGGGGTCc E4F1; E4F hsa-miR-631 18 40 cGACU--CCAGACCCGGUCCAGA |||: || | ||| |||| | cCTGGCCGGGCAGGGACAGGGCA E4F1; E4F hsa-miR-636 9 35 GACGCCC---GCCCUGCUCGUUCGUGU ||||||| | || ||:|||:| ||| CTGCGGGGTCCTGGCCGGGCAGGGACA E4F1; E4F hsa-miR-637 36 61 ugCGUCUC--GGGCUUUCG-GGGGUca |||||| |:| :||| ||||| ggGCAGAGGACTC-TGAGCGCCCCAcc E4F1; E4F hsa-miR-639 8 34 uGUCG--CGAGCGUUGG--CGUCGCUa | || | || :::|| |||| || tCTGCGGGGTCCTGGCCGGGCAGGGAc E4F1; E4F hsa-miR-650 44 72 CAG-GACUCUCGCG------ACGGA-GGA | | ||||| || | ||||| ||| GACTCTGAGCGCCCCACCCATGCCTGCCT E4F1; E4F hsa-miR-652 90 111 aCGUGUUGGGAUCACCGCGGuaa |||||: |:| |||||| gGCACAG-GATGGAGGCGCCcca E4F1; E4F hsa-miR-661 33 67 UG-CGCG--UCC--GGUCUC------UGGGUCCGu || | || ||| :| ||| ||||| || ACAGGGCAGAGGACTCTGAGCGCCCCACCCATGCc E4F1; E4F hsa-miR-661 9 29 ugCGCGUCCGGUCUCUGGGUCCGU ||| :| || | | ||:|||| ctGCGGGGTCCTG-G--CCGGGCA E4F1; E4F hsa-miR-663 4 25 CGCCAGGGCGCCGC-GGGGCGGa | ||| |:|||| | ||: ||| GAGGT-CTGCGGGGTCCTGGCCg E4F1; E4F hsa-miR-668 27 47 CAUCACCCGGCUCGGCUCACUGu | || || | |:|| ||| ||| GCAG-GGACAGGGCAGAG-GACt E4F1; E4F hsa-miR-766 1 25 cgACUCC-GACACCCC--GACCuca ||||| ||| |||| |||| caTGAGGTCTGCGGGGTCCTGGccg E4F1; E4F hsa-miR-767-3p 18 42 ucuuuGGUAC--CCCAUACUCGUCU ||: | ||| |:||||| cctggCCGGGCAGGGACAGGGCAGA E4F1; E4F hsa-miR-769-5p 30 49 ucgaGUCUUGGGUCUCCAGAGu |||:: |||||| ||| gggaCAGGG--CAGAGGACTCt E4F1; E4F hsa-miR-770-5p 3 23 AC-CGGGACUGUGCACCAUGACCu || | :||| || ||| |||| TGAGGTCTG---CGGGGTCCTGGc E4F1; E4F hsa-miR-92 24 43 GUCCGGCCCUGUUCACGUuau |:||| ||||| || ||| CGGGCAGGGAC-AGGGCAgag E4F1; E4F hsa-miR-99b 1 17 gcguuccagCCAAGAUGCCCac || |||:|||| ----catgaGG-TCTGCGGGgt

DNA & RNA Element - SomamiR Gene Name Mutation Mutation ID miR ID Chromosome Location Ref Alt mirsite mirseed Seed Class Sample Name Cancer Type E4F1 chr16:g.2229620C>G COSM968656 hsa-miR-4716-5p chr16 2229620 C G cccACATGGtggtgg UCCAUGUU m6b TCGA-BK-A0CC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2229620C>G COSM968656 hsa-miR-4733-3p chr16 2229620 C G cccacaTGGTGGtgg CCACCAGG m6a TCGA-BK-A0CC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2229620C>G COSM968656 hsa-miR-4764-5p chr16 2229620 C G ccCACATCgtggtgg UGGAUGUG m6c TCGA-BK-A0CC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2229620C>G COSM968656 hsa-miR-576-3p chr16 2229620 C G ccCACATCgtggtgg AAGAUGUG m6c TCGA-BK-A0CC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2229620C>G COSM968656 hsa-miR-591 chr16 2229620 C G cccaCATGGTggtgg AGACCAUG m6c TCGA-BK-A0CC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2229620C>G COSM968656 hsa-miR-6776-3p chr16 2229620 C G cccacatGGTGGTgg CAACCACC m6c TCGA-BK-A0CC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2229620C>G COSM968656 hsa-miR-7153-3p chr16 2229620 C G cccaCATGGTGgtgg CACCAUGG m7a TCGA-BK-A0CC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2229620C>G COSM968656 hsa-miR-767-5p chr16 2229620 C G cccacATGGTGgtgg UGCACCAU m6c TCGA-BK-A0CC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-1226-3p chr16 2229621 G C ccacatcCTGGTGga UCACCAGC m6b TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-1255a chr16 2229621 G C ccaCATCCTggtgga AGGAUGAG m6a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-1265 chr16 2229621 G C ccACATCCTGgtgga CAGGAUGU m8a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-1911-3p chr16 2229621 G C ccacatCCTGGTGga CACCAGGC m7a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-197-3p chr16 2229621 G C ccacatcGTGGTGga UUCACCAC m6c TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-2392 chr16 2229621 G C ccaCATCCTggtgga UAGGAUGG m6b TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-3605-5p chr16 2229621 G C ccaCATCCTggtgga UGAGGAUG m6c TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-4459 chr16 2229621 G C ccacaTCCTGGtgga CCAGGAGG m6a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-4645-5p chr16 2229621 G C ccacatCCTGGTgga ACCAGGCA m6a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-4661-3p chr16 2229621 G C ccacATCCTGgtgga CAGGAUCC m6a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-4733-3p chr16 2229621 G C ccacatCCTGGTGGa CCACCAGG m8a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-4764-5p chr16 2229621 G C cCACATCCtggtgga UGGAUGUG m7b TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-4768-3p chr16 2229621 G C ccacaTCCTGGtgga CCAGGAGA m6a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-665 chr16 2229621 G C ccacaTCCTGGTgga ACCAGGAG m7a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-6753-5p chr16 2229621 G C ccacatCCTGGTGga CACCAGGG m7a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-6837-5p chr16 2229621 G C ccacatCCTGGTgga ACCAGGGC m6a TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229621G>C COSM703015 hsa-miR-6840-3p chr16 2229621 G C ccacaTCCTGGtgga GCCCAGGA m6c TCGA-51-4080-01 [lung][NS][carcinoma][squamous_cell_carcinoma] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-3123 chr16 2229637 C T gcggccTCTCTGgca CAGAGAAU m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-3142 chr16 2229637 C T gcGGCCTTtctggca AAGGCCUU m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-3188 chr16 2229637 C T gcgGCCTCTctggca AGAGGCUU m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-3910 chr16 2229637 C T gcgGCCTTTctggca AAAGGCAU m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-3919 chr16 2229637 C T gcggccTCTCTGgca GCAGAGAA m6b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-3922-5p chr16 2229637 C T gcGGCCTTtctggca UCAAGGCC m6c TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-4257 chr16 2229637 C T gcggcctCTCTGGca CCAGAGGU m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-4484 chr16 2229637 C T gcgGCCTTTctggca AAAAGGCG m6b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-4493 chr16 2229637 C T gcGGCCTTtctggca AGAAGGCC m6c TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-4747-3p chr16 2229637 C T gcGGCCTTtctggca AAGGCCCG m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-4753-5p chr16 2229637 C T gcGGCCTTtctggca CAAGGCCA m6b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-4756-3p chr16 2229637 C T gcggccTCTCTGGca CCAGAGAU m7a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-485-5p chr16 2229637 C T gcgGCCTCTctggca AGAGGCUG m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-488-3p chr16 2229637 C T gcggCCTTTCtggca UUGAAAGG m6c TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-5008-5p chr16 2229637 C T gcGGCCTCtctggca UGAGGCCC m6b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-520a-5p chr16 2229637 C T gcggcctCTCTGGca CUCCAGAG m6c TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-525-5p chr16 2229637 C T gcggcctCTCTGGca CUCCAGAG m6c TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-548an chr16 2229637 C T gcgGCCTTTctggca AAAAGGCA m6b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-5681a chr16 2229637 C T gcggCCTTTCTggca AGAAAGGG m7a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6089 chr16 2229637 C T gCGGCCTCtctggca GGAGGCCG m7b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6501-3p chr16 2229637 C T gcggcctCTCTGGca CCAGAGCA m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6730-5p chr16 2229637 C T gcggCCTTTCTggca AGAAAGGU m7a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6758-5p chr16 2229637 C T gcggCCTCTCTggca UAGAGAGG m7b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6768-3p chr16 2229637 C T gcGGCCTTTctggca CAAAGGCC m7b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6856-5p chr16 2229637 C T gcggCCTCTCTggca AAGAGAGG m7b TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6859-5p chr16 2229637 C T gcggCCTCTCtggca GAGAGGAA m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6866-5p chr16 2229637 C T gcgGCCTCTctggca UUAGAGGC m6c TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2229637C>T COSM3969455 hsa-miR-6884-5p chr16 2229637 C T gcgGCCTCTctggca AGAGGCUG m6a TCGA-DU-6400-01 [central_nervous_system][brain][glioma][NS] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-136-3p chr16 2232319 G T tgaacaATGATGgcc CAUCAUCG m6a TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-362-5p chr16 2232319 G T tgaaCAAGGATggcc AAUCCUUG m7b TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-382-3p chr16 2232319 G T tgaacAATGATggcc AAUCAUUC m6b TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-4289 chr16 2232319 G T tgaACAATGatggcc GCAUUGUG m6b TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-4312 chr16 2232319 G T tgaACAAGGatggcc GGCCUUGU m6c TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-4445-5p chr16 2232319 G T tgAACAATgatggcc AGAUUGUU m6c TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-4793-5p chr16 2232319 G T tgaacaAGGATGgcc ACAUCCUG m6b TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-500a-5p chr16 2232319 G T tgaacAAGGATggcc UAAUCCUU m6c TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-500b-5p chr16 2232319 G T tgaaCAAGGATggcc AAUCCUUG m7b TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-501-5p chr16 2232319 G T tgaacAAGGATggcc AAUCCUUU m6b TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-502-5p chr16 2232319 G T tgaaCAAGGATggcc AUCCUUGC m7a TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-5196-3p chr16 2232319 G T tgaacaAGGATGgcc UCAUCCUC m6b TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-616-3p chr16 2232319 G T tgaaCAATGAtggcc AGUCAUUG m6c TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-6739-3p chr16 2232319 G T tGAACAATgatggcc AUUGUUCU m7a TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-6780b-3p chr16 2232319 G T tgaACAAGGatggcc UCCCUUGU m6c TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232319G>T COSM968657 hsa-miR-6884-3p chr16 2232319 G T tgaacaaTGATGGcc CCCAUCAC m6b TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma] E4F1 chr16:g.2232323G>A COSM3667790 hsa-miR-1199-3p chr16 2232323 G A caaggatGGCCGCta UGCGGCCG m6b CHC1489T [liver][NS][carcinoma][hepatocellular_carcinoma] E4F1 chr16:g.2232323G>A COSM3667790 hsa-miR-15a-3p chr16 2232323 G A caaggATGGCCgcta CAGGCCAU m6c CHC1489T [liver][NS][carcinoma][hepatocellular_carcinoma] E4F1 chr16:g.2232323G>A COSM3667790 hsa-miR-3187-3p chr16 2232323 G A caaggATGGCCgcta UUGGCCAU m6c CHC1489T [liver][NS][carcinoma][hepatocellular_carcinoma] E4F1 chr16:g.2232323G>A COSM3667790 hsa-miR-4529-5p chr16 2232323 G A caagGATGGCCgcta AGGCCAUC m7b CHC1489T [liver][NS][carcinoma][hepatocellular_carcinoma] E4F1 chr16:g.2232323G>A COSM3667790 hsa-miR-4793-5p chr16 2232323 G A caAGGATGgccgcta ACAUCCUG m6b CHC1489T [liver][NS][carcinoma][hepatocellular_carcinoma] E4F1 chr16:g.2232323G>A COSM3667790 hsa-miR-5196-3p chr16 2232323 G A caAGGATGgccgcta UCAUCCUC m6b CHC1489T [liver][NS][carcinoma][hepatocellular_carcinoma] E4F1 chr16:g.2232323G>A COSM3667790 hsa-miR-6508-3p chr16 2232323 G A caaggATGGCCgcta UGGGCCAU m6c CHC1489T [liver][NS][carcinoma][hepatocellular_carcinoma] E4F1 chr16:g.2234731G>A COSM3690697 hsa-miR-1199-3p chr16 2234731 G A aagtgCGGCCGtggc UGCGGCCG m6c TCGA-AY-6197-01 [large_intestine][caecum][carcinoma][adenocarcinoma] E4F1 chr16:g.2234731G>A COSM3690697 hsa-miR-1908-3p chr16 2234731 G A aagtGCGGCCGtggc CCGGCCGC m7b TCGA-AY-6197-01 [large_intestine][caecum][carcinoma][adenocarcinoma] E4F1 chr16:g.2234731G>A COSM3690697 hsa-miR-3177-3p chr16 2234731 G A aagtgcgGCCGTGgc UGCACGGC m6c TCGA-AY-6197-01 [large_intestine][caecum][carcinoma][adenocarcinoma] E4F1 chr16:g.2234731G>A COSM3690697 hsa-miR-4445-3p chr16 2234731 G A aagtgcgGCCGTGgc CACGGCAA m6a TCGA-AY-6197-01 [large_intestine][caecum][carcinoma][adenocarcinoma] E4F1 chr16:g.2234731G>A COSM3690697 hsa-miR-4485-3p chr16 2234731 G A aagtgcGGCCGTggc UAACGGCC m6c TCGA-AY-6197-01 [large_intestine][caecum][carcinoma][adenocarcinoma] E4F1 chr16:g.2234731G>A COSM3690697 hsa-miR-4665-3p chr16 2234731 G A aagtgCGGCCGtggc CUCGGCCG m6c TCGA-AY-6197-01 [large_intestine][caecum][carcinoma][adenocarcinoma] E4F1 chr16:g.2234731G>A COSM3690697 hsa-miR-6075 chr16 2234731 G A aagtgcGGCCGTggc ACGGCCCA m6a TCGA-AY-6197-01 [large_intestine][caecum][carcinoma][adenocarcinoma] E4F1 chr16:g.2234731G>A COSM3690697 hsa-miR-6850-3p chr16 2234731 G A aagtgCGGCCGtggc CCCGGCCG m6c TCGA-AY-6197-01 [large_intestine][caecum][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-1199-3p chr16 2234733 C A gtgCGGCCGtggctt UGCGGCCG m6c LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-1273g-3p chr16 2234733 C A gtgcgGCAGTGGctt ACCACUGC m7b LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-181a-2-3p chr16 2234733 C A gtgcggCAGTGGctt ACCACUGA m6b LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-18a-3p chr16 2234733 C A gtgcGGCAGTggctt ACUGCCCU m6a LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-1908-3p chr16 2234733 C A gtGCGGCCGtggctt CCGGCCGC m7b LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-3177-3p chr16 2234733 C A gtgcgGCCGTGgctt UGCACGGC m6c LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-324-3p chr16 2234733 C A gtgcGGCAGTggctt ACUGCCCC m6a LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-4252 chr16 2234733 C A gtgcggCAGTGGCtt GGCCACUG m7b LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-4418 chr16 2234733 C A gtgcgGCAGTGgctt CACUGCAG m6a LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-4445-3p chr16 2234733 C A gtgcgGCCGTGgctt CACGGCAA m6a LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-4485-3p chr16 2234733 C A gtgcGGCCGTggctt UAACGGCC m6c LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-4632-3p chr16 2234733 C A gtGCGGCAgtggctt UGCCGCCC m6a LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-4665-3p chr16 2234733 C A gtgCGGCCGtggctt CUCGGCCG m6c LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-5002-3p chr16 2234733 C A gtgcGGCAGTggctt UGACUGCC m6c LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-6075 chr16 2234733 C A gtgcGGCCGTggctt ACGGCCCA m6a LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-6509-3p chr16 2234733 C A gtgcggCAGTGGctt UUCCACUG m6c LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-6807-3p chr16 2234733 C A gtgcgGCAGTGgctt CACUGCAU m6a LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-6850-3p chr16 2234733 C A gtgCGGCCGtggctt CCCGGCCG m6c LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma] E4F1 chr16:g.2234733C>A COSM4639407 hsa-miR-6890-3p chr16 2234733 C A gtgcGGCAGTGGctt CCACUGCC m8a LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma]

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region E4F1 High_conserved miR-503 chr16:2281119 7-mer-A1 13 ncRNA E4F1 High_conserved miR-503 chr16:2283541 7-mer-m8 4 CDS, ncRNA E4F1 High_conserved miR-9/9ab chr16:2284783 7-mer-m8 49 ncRNA E4F1 High_conserved miR-9/9ab chr16:2284860 7-mer-m8 49 CDS, ncRNA E4F1 High_conserved miR-141/200a chr16:2284954 7-mer-m8 7 CDS, ncRNA E4F1 High_conserved miR-145 chr16:2283630 7-mer-A1 9 CDS, ncRNA E4F1 High_conserved miR-146ac/146b-5p chr16:2284966 7-mer-m8 58 CDS, ncRNA E4F1 High_conserved miR-148ab-3p/152 chr16:2282816 8-mer 31 CDS, ncRNA E4F1 High_conserved miR-148ab-3p/152 chr16:2284568 7-mer-A1 24 ncRNA E4F1 High_conserved miR-148ab-3p/152 chr16:2285458 7-mer-A1 24 3pUTR, CDS, ncRNA E4F1 High_conserved miR-150/5127 chr16:2282223 7-mer-A1 4 CDS, ncRNA E4F1 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr16:2280139 7-mer-m8 11 ncRNA E4F1 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr16:2281119 7-mer-A1 13 ncRNA E4F1 High_conserved miR-193/193b/193a-3p chr16:2281086 7-mer-m8 16 ncRNA E4F1 High_conserved miR-193/193b/193a-3p chr16:2283322 7-mer-m8 9 ncRNA E4F1 High_conserved miR-199ab-5p chr16:2280199 7-mer-m8 7 ncRNA E4F1 High_conserved miR-19ab chr16:2281574 8-mer 38 ncRNA E4F1 High_conserved miR-19ab chr16:2283353 8-mer 11 ncRNA E4F1 High_conserved miR-205/205ab chr16:2285239 7-mer-m8 62 3pUTR, CDS, ncRNA E4F1 High_conserved miR-210 chr16:2281769 7-mer-m8 4 ncRNA E4F1 High_conserved miR-210 chr16:2284592 7-mer-m8 11 CDS, ncRNA E4F1 High_conserved miR-214/761/3619-5p chr16:2278355 8-mer 18 CDS E4F1 High_conserved miR-214/761/3619-5p chr16:2279749 7-mer-m8 0 ncRNA E4F1 High_conserved miR-214/761/3619-5p chr16:2280524 7-mer-m8 20 ncRNA E4F1 High_conserved miR-214/761/3619-5p chr16:2281168 7-mer-m8 13 ncRNA E4F1 High_conserved miR-214/761/3619-5p chr16:2281720 7-mer-m8 7 ncRNA E4F1 High_conserved miR-214/761/3619-5p chr16:2282208 7-mer-A1 31 CDS, ncRNA E4F1 High_conserved miR-214/761/3619-5p chr16:2283496 7-mer-m8 44 CDS, ncRNA E4F1 High_conserved miR-214/761/3619-5p chr16:2283575 7-mer-m8 13 CDS, ncRNA E4F1 High_conserved miR-214/761/3619-5p chr16:2284874 7-mer-m8 38 CDS, ncRNA E4F1 High_conserved miR-218/218a chr16:2278445 7-mer-A1 60 CDS, ncRNA E4F1 High_conserved miR-22/22-3p chr16:2280558 7-mer-m8 24 ncRNA E4F1 High_conserved miR-223 chr16:2284570 7-mer-A1 18 ncRNA E4F1 High_conserved miR-24/24ab/24-3p chr16:2283278 8-mer 0 ncRNA E4F1 High_conserved miR-24/24ab/24-3p chr16:2285205 7-mer-m8 18 ncRNA E4F1 High_conserved miR-25/32/92abc/363/363-3p/367 chr16:2280228 7-mer-m8 11 ncRNA E4F1 High_conserved miR-27abc/27a-3p chr16:2285473 7-mer-m8 38 3pUTR, CDS, ncRNA E4F1 High_conserved miR-30abcdef/30abe-5p/384-5p chr16:2281559 8-mer 40 ncRNA E4F1 High_conserved miR-30abcdef/30abe-5p/384-5p chr16:2283769 7-mer-m8 20 ncRNA E4F1 High_conserved miR-103a/107/107ab chr16:2281721 7-mer-A1 4 ncRNA E4F1 High_conserved miR-103a/107/107ab chr16:2283497 7-mer-A1 40 CDS, ncRNA E4F1 High_conserved miR-338/338-3p chr16:2280525 7-mer-A1 11 ncRNA E4F1 High_conserved miR-338/338-3p chr16:2283394 7-mer-A1 7 ncRNA E4F1 High_conserved miR-338/338-3p chr16:2283861 7-mer-A1 27 ncRNA E4F1 High_conserved miR-338/338-3p chr16:2284875 7-mer-A1 44 CDS, ncRNA E4F1 High_conserved miR-33a-3p/365/365-3p chr16:2280357 7-mer-m8 2 ncRNA E4F1 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr16:2283835 7-mer-A1 13 ncRNA E4F1 High_conserved miR-425/425-5p/489 chr16:2285485 7-mer-m8 33 3pUTR, CDS, ncRNA E4F1 High_conserved miR-10abc/10a-5p chr16:2280094 7-mer-m8 4 ncRNA E4F1 High_conserved miR-455-5p chr16:2282185 7-mer-m8 33 CDS, ncRNA E4F1 High_conserved miR-128/128ab chr16:2279613 7-mer-m8 31 CDS, ncRNA E4F1 High_conserved miR-128/128ab chr16:2285427 7-mer-m8 33 3pUTR, CDS, ncRNA E4F1 High_conserved miR-128/128ab chr16:2285472 8-mer 38 3pUTR, CDS, ncRNA E4F1 Medium_conserved miR-543 chr16:2280800 7-mer-m8 11 ncRNA E4F1 Medium_conserved miR-544/544ab/544-3p chr16:2281541 7-mer-A1 36 ncRNA E4F1 Medium_conserved miR-544/544ab/544-3p chr16:2283513 7-mer-m8 51 CDS, ncRNA E4F1 Medium_conserved miR-544/544ab/544-3p chr16:2285294 7-mer-m8 56 3pUTR, CDS, ncRNA E4F1 Medium_conserved miR-615-3p chr16:2280129 8-mer 11 ncRNA E4F1 Medium_conserved miR-615-3p chr16:2280794 7-mer-A1 11 ncRNA E4F1 Medium_conserved miR-615-3p chr16:2281391 7-mer-m8 9 ncRNA E4F1 Medium_conserved miR-615-3p chr16:2282033 7-mer-A1 0 ncRNA E4F1 Medium_conserved miR-873 chr16:2280006 7-mer-m8 22 ncRNA E4F1 Medium_conserved miR-874 chr16:2280719 7-mer-m8 7 ncRNA E4F1 Medium_conserved miR-874 chr16:2283841 7-mer-m8 9 ncRNA E4F1 Medium_conserved miR-874 chr16:2285614 7-mer-m8 13 3pUTR, ncRNA E4F1 Medium_conserved miR-149 chr16:2278311 7-mer-A1 13 CDS E4F1 Medium_conserved miR-149 chr16:2282110 7-mer-m8 7 ncRNA E4F1 Medium_conserved miR-149 chr16:2283280 7-mer-m8 0 ncRNA E4F1 Medium_conserved miR-149 chr16:2283566 7-mer-m8 24 CDS, ncRNA E4F1 Medium_conserved miR-149 chr16:2284094 7-mer-m8 7 ncRNA E4F1 Medium_conserved miR-185/882/3473/4306/4644 chr16:2279768 7-mer-m8 16 ncRNA E4F1 Medium_conserved miR-185/882/3473/4306/4644 chr16:2279930 7-mer-m8 11 ncRNA E4F1 Medium_conserved miR-185/882/3473/4306/4644 chr16:2280275 7-mer-m8 2 ncRNA E4F1 Medium_conserved miR-185/882/3473/4306/4644 chr16:2280702 7-mer-A1 11 ncRNA E4F1 Medium_conserved miR-185/882/3473/4306/4644 chr16:2281983 8-mer 9 ncRNA E4F1 Medium_conserved miR-197 chr16:2280187 7-mer-m8 11 ncRNA E4F1 Medium_conserved miR-197 chr16:2282316 7-mer-A1 47 3pUTR, CDS, ncRNA E4F1 Medium_conserved miR-224 chr16:2283750 7-mer-m8 27 ncRNA E4F1 Medium_conserved miR-28-5p/708/1407/1653/3139 chr16:2283571 7-mer-m8 4 CDS, ncRNA E4F1 Medium_conserved miR-299/299-3p/3563-3p chr16:2279621 7-mer-m8 51 CDS, ncRNA E4F1 Medium_conserved miR-299/299-3p/3563-3p chr16:2282480 7-mer-m8 60 3pUTR, CDS, ncRNA E4F1 Medium_conserved miR-320abcd/4429 chr16:2279940 7-mer-m8 9 ncRNA E4F1 Medium_conserved miR-326/330/330-5p chr16:2279598 7-mer-m8 22 CDS, ncRNA E4F1 Medium_conserved miR-326/330/330-5p chr16:2283185 7-mer-m8 36 ncRNA E4F1 Medium_conserved miR-326/330/330-5p chr16:2283439 7-mer-m8 36 CDS E4F1 Medium_conserved miR-326/330/330-5p chr16:2285331 7-mer-m8 20 3pUTR, CDS, ncRNA E4F1 Medium_conserved miR-328a/328b-3p chr16:2283320 7-mer-m8 9 ncRNA E4F1 Medium_conserved miR-328a/328b-3p chr16:2285546 7-mer-m8 51 3pUTR, CDS, ncRNA E4F1 Medium_conserved miR-329/329ab/362-3p chr16:2284013 7-mer-m8 13 ncRNA E4F1 Medium_conserved miR-335/335-5p chr16:2285198 7-mer-m8 2 ncRNA E4F1 Medium_conserved miR-339b/339-5p/3586-5p chr16:2282135 7-mer-m8 4 ncRNA E4F1 Medium_conserved miR-339b/339-5p/3586-5p chr16:2283308 7-mer-A1 7 ncRNA E4F1 Medium_conserved miR-339b/339-5p/3586-5p chr16:2285612 7-mer-m8 13 3pUTR, ncRNA E4F1 Medium_conserved miR-342-3p chr16:2282872 7-mer-m8 11 CDS, ncRNA E4F1 Medium_conserved miR-346 chr16:2279652 7-mer-A1 38 CDS, ncRNA E4F1 Medium_conserved miR-370 chr16:2278363 7-mer-m8 16 CDS E4F1 Medium_conserved miR-370 chr16:2280628 8-mer 9 ncRNA E4F1 Medium_conserved miR-370 chr16:2281093 7-mer-m8 13 ncRNA E4F1 Medium_conserved miR-370 chr16:2281819 7-mer-A1 9 ncRNA E4F1 Medium_conserved miR-370 chr16:2282091 7-mer-m8 11 ncRNA E4F1 Medium_conserved miR-370 chr16:2282265 7-mer-m8 11 CDS, ncRNA E4F1 Medium_conserved miR-370 chr16:2283887 7-mer-m8 42 ncRNA E4F1 Medium_conserved miR-370 chr16:2284087 7-mer-m8 7 ncRNA E4F1 Medium_conserved miR-370 chr16:2284597 7-mer-m8 51 CDS, ncRNA E4F1 Medium_conserved miR-378/422a/378bcdefhi chr16:2281112 7-mer-m8 11 ncRNA E4F1 Medium_conserved miR-378/422a/378bcdefhi chr16:2283143 7-mer-A1 51 CDS, ncRNA E4F1 Medium_conserved miR-125a-3p/1554 chr16:2280868 7-mer-m8 7 ncRNA E4F1 Medium_conserved miR-125a-3p/1554 chr16:2283098 7-mer-m8 44 CDS, ncRNA E4F1 Medium_conserved miR-431 chr16:2280768 7-mer-A1 11 ncRNA E4F1 Medium_conserved miR-433 chr16:2285236 8-mer 73 3pUTR, CDS, ncRNA E4F1 Medium_conserved miR-485-5p/1698/1703/1962 chr16:2278335 7-mer-m8 13 CDS E4F1 Medium_conserved miR-485-5p/1698/1703/1962 chr16:2280960 7-mer-m8 0 ncRNA E4F1 Medium_conserved miR-485-5p/1698/1703/1962 chr16:2283418 7-mer-m8 16 ncRNA E4F1 Medium_conserved miR-486-5p/3107 chr16:2280092 7-mer-m8 4 ncRNA E4F1 Medium_conserved miR-491-5p chr16:2279982 7-mer-m8 20 ncRNA E4F1 Medium_conserved miR-491-5p chr16:2283709 7-mer-m8 4 ncRNA E4F1 Medium_conserved miR-491-5p chr16:2284854 7-mer-m8 11 ncRNA E4F1 Medium_conserved miR-494 chr16:2281442 7-mer-A1 16 ncRNA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score E4F1 RAID00255376 hsa-miR-942-5p miRNA MIMAT0004985 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID00282553 hsa-miR-544a miRNA MIMAT0003164 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID00489465 hsa-miR-30c-5p miRNA MIMAT0000244 E4F1 mRNA 1877 CLIP-seq//Prediction 0.6308 E4F1 RAID00871644 hsa-miR-425-5p miRNA MIMAT0003393 E4F1 mRNA 1877 CLIP-seq//Prediction 0.6308 E4F1 RAID01713799 hsa-miR-1281 miRNA MIMAT0005939 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID01717632 hsa-miR-125a-3p miRNA MIMAT0004602 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID01915237 hsa-miR-92a-3p miRNA MIMAT0000092 E4F1 mRNA 1877 CLASH 0.5483 E4F1 RAID01937706 hsa-miR-597-3p miRNA MIMAT0026619 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID02115620 hsa-miR-28-5p miRNA MIMAT0000085 E4F1 mRNA 1877 CLIP-seq 0.5483 E4F1 RAID02237734 hsa-miR-4307 miRNA MIMAT0016860 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID02559273 hsa-miR-99a-5p miRNA MIMAT0000097 E4F1 mRNA 1877 CLASH 0.5483 E4F1 RAID02619357 hsa-miR-205-5p miRNA MIMAT0000266 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID03070701 hsa-miR-4456 miRNA MIMAT0018978 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID03531624 hsa-miR-346 miRNA MIMAT0000773 E4F1 mRNA 1877 Prediction 0.1828 E4F1 RAID03548461 hsa-miR-128-3p miRNA MIMAT0000424 E4F1 mRNA 1877 CLIP-seq//Prediction 0.6308 E4F1 RAID03782206 hsa-miR-27b-3p miRNA MIMAT0000419 E4F1 mRNA 1877 CLIP-seq//Prediction 0.6308 E4F1 RAID03834138 hsa-miR-27a-3p miRNA MIMAT0000084 E4F1 mRNA 1877 CLIP-seq//Prediction 0.6308 E4F1 RAID04893265 TUG1 lncRNA 55000 E4F1 protein 1877 Microarray//RNA-seq 0.6606 E4F1 RAID04937846 FENDRR lncRNA 400550 E4F1 protein 1877 Microarray//RNA-seq 0.6606