DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome TRAIP 3'UTR 822b54c1da BA113251 NM_005879 chr3:49841032-49868889:- TRAIP 3'UTR 1bdb12f501 BA113252 NM_005879 chr3:49841032-49868889:- TRAIP 3'UTR d01f256be8 BA113253 NM_005879 chr3:49841032-49868889:- TRAIP 3'UTR 555a275717 BA113254 NM_005879 chr3:49841032-49868889:- TRAIP 5'UTR 822b54c1da CA177828 NM_005879 chr3:49841541-49868996:- TRAIP 5'UTR 1bdb12f501 CA177829 NM_005879 chr3:49841541-49869001:- TRAIP 5'UTR d01f256be8 CA177830 NM_005879 chr3:49841541-49869004:- TRAIP 5'UTR 555a275717 CA177831 NM_005879 chr3:49852792-49869004:- TRAIP 5'UTR 21da64b180 NM_005879 chr3:49852159-49869004:- TRAIP 5'UTR 72851ea617 NM_005879 chr3:49841863-49869004:-

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand hsa_circ_0065755 chr3 49869348 49879372 - hsa_circ_0065758 chr3 49879258 49882013 - hsa_circ_0065760 chr3 49884957 49885633 - hsa_circ_0065756 chr3 49877204 49885633 - hsa_circ_0065757 chr3 49879258 49879372 - hsa_circ_0065759 chr3 49879885 49882013 -

DNA & RNA Element - circRNADb circRNA ID Chrom Start End Strand Samples hsa_circ_16707 chr3 49884957 49885633 - H9 hESCs

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-TRAIP-overlap.1 NM_005879Tchr3:49866530-49869501 expressed TRAIP 10293 protein-coding - not_available hsa-circ-TRAIP-overlap.2 NM_005879Tchr3:49884957-49891980 expressed TRAIP 10293 protein-coding - not_available hsa-circ-TRAIP-overlap.3 NM_005879Tchr3:49866530-49870473 expressed TRAIP 10293 protein-coding - not_available hsa-circ-TRAIP.1 NM_005879Tchr3:49877204-49885633 expressed TRAIP 10293 protein-coding - hsa_circ_0065756 hsa-circ-TRAIP.2 NM_005879Tchr3:49879258-49879372 expressed TRAIP 10293 protein-coding - hsa_circ_0065757 hsa-circ-TRAIP.3 NM_005879Tchr3:49879258-49882013 expressed TRAIP 10293 protein-coding - hsa_circ_0065758 hsa-circ-TRAIP.4 NM_005879Tchr3:49869348-49879372 expressed TRAIP 10293 protein-coding - hsa_circ_0065755 hsa-circ-TRAIP.5 NM_005879Tchr3:49879885-49882013 expressed TRAIP 10293 protein-coding - hsa_circ_0065759 hsa-circ-TRAIP.7 NM_005879Tchr3:49884958-49885633 none TRAIP 10293 protein-coding not_available not_available hsa-circ-TRAIP.8 NM_005879Tchr3:49881233-49881361 expressed TRAIP 10293 protein-coding - not_available

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT022218 hsa-miR-124-3p Homo sapiens TRAIP 10293 Homo sapiens Microarray Functional MTI (Weak) 18668037 MIRT024554 hsa-miR-215-5p Homo sapiens TRAIP 10293 Homo sapiens Microarray Functional MTI (Weak) 19074876 MIRT025570 hsa-miR-34a-5p Homo sapiens TRAIP 10293 Homo sapiens Proteomics Functional MTI (Weak) 21566225 MIRT026188 hsa-miR-192-5p Homo sapiens TRAIP 10293 Homo sapiens Microarray Functional MTI (Weak) 19074876

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0002891 hsa-miR-18a* 10293 TRAIP ggUCUUCCUCGUGAAUCCCGUCa || ||| | ||||||| ccAGCCUGAGGUGUAAGGGCAGa 2 22 99 121 [hg19:3:49866415-49866437:-] 0.5598 149 7 -23.63 -0.9632 MIMAT0004495 hsa-miR-22* 10293 TRAIP auuucgaaCGGU--GACUUCUUGa |||| ||||||||| cugaugagGCCAGCCUGAAGAACc 2 15 290 313 [hg19:3:49880885-49880908:-] 0.6650 157 7 -19.65 -0.5061 MIMAT0000079 hsa-miR-24-1* 10293 TRAIP ugacuAUAGUCGAGUCA-UCCGu || | |||||| |||| ucaacUAAGACCUCAGUGAGGCu 2 18 235 257 [hg19:3:49880941-49880963:-] 0.6128 125 0 -16.09 -0.3101 MIMAT0004497 hsa-miR-24-2* 10293 TRAIP gacacaaagUCGAGUCA-UCCGu | |||||| |||| ucaacuaagACCUCAGUGAGGCu 2 14 235 257 [hg19:3:49880941-49880963:-] 0.6128 121 0 -15.94 -0.3154 MIMAT0004512 hsa-miR-100* 10293 TRAIP guauggauaucuauGUUCGAAc ||||||| aggcagccucagccCAAGCUUc 2 9 356 377 [hg19:3:49866159-49866180:-] 0.5791 140 7 -12.92 -0.1723 MIMAT0004517 hsa-miR-106a* 10293 TRAIP caUUCUUCACGAAUGUAA-CGUc ||||| ||| |||| ||| ugAAGAA--CCUUCCAUUAGCAc 2 21 305 325 [hg19:3:49880873-49880893:-] 0.6650 125 0 -9.89 -0.4164 MIMAT0004562 hsa-miR-196a* 10293 TRAIP gaGUCCGUCA-AAGAACAACGGc ||||: | || ||||||| agCAGGUCCUGCUCCUGUUGCCa 2 21 227 249 [hg19:3:49866287-49866309:-] 0.5623 155 7 -18.51 -0.2595 MIMAT0004568 hsa-miR-221* 10293 TRAIP uuuaGAUG-UAACAUACGGUCCa ||:| ||| ||||||| ggucCUGCUCCUGU-UGCCAGGc 2 19 231 252 [hg19:3:49866284-49866305:-] 0.5623 147 7 -19.24 -0.1760 MIMAT0004569 hsa-miR-222* 10293 TRAIP ucCUAGAUGUGACCGAUGACUc |:|: |:||| ||||||| guGGUUCAUACU--CUACUGAu 2 21 275 294 [hg19:3:49880904-49880923:-] 0.6464 157 7 -15.83 -0.7044 MIMAT0004598 hsa-miR-141* 10293 TRAIP agguugugacaugACCUUCUAc |||||||| uguauggagaggaUGGAAGAUu 2 10 448 469 [hg19:3:49866067-49866088:-] 0.5585 145 7 -12.37 -1.0967 MIMAT0004603 hsa-miR-125b-2* 10293 TRAIP caGGGUUCUCGGACUGAACACu | :| :||: ||||||| gcCAUAUUGGCUAUACUUGUGg 2 21 154 175 [hg19:3:49881023-49881044:-] 0.5455 148 7 -17.49 -0.5344 MIMAT0004606 hsa-miR-136* 10293 TRAIP ucugaGUAAACUCUGCU-ACUAc ||| |||:||| |||| aggggCAUGAGAGGCGAUUGAUc 2 18 504 526 [hg19:3:49880672-49880694:-] 0.7245 129 0 -20.16 -0.5902 MIMAT0004614 hsa-miR-193a-5p 10293 TRAIP aguagagcgggcguuUCUGGGu |||||| agagugaacagccuuAGACCCa 2 8 437 458 [hg19:3:49880740-49880761:-] 0.7245 120 6 -17.77 -0.1179 MIMAT0004671 hsa-miR-194* 10293 TRAIP guCUAUUGUCGUCGGGGUGACc || | | ||| ||||||| cuGACAUGACCAG-CCCACUGa 2 21 199 219 [hg19:3:49866317-49866337:-] 0.5249 154 7 -18.67 -0.2127 MIMAT0000685 hsa-miR-34b* 10293 TRAIP guUAGUCGAUUACUGUG-ACGGAu | ::|| | ||||| ||||| ccAAUGGCCA--GACACAUGCCUg 2 22 16 37 [hg19:3:49866499-49866520:-] 0.5433 122 0 -20.78 -0.2066 MIMAT0004689 hsa-miR-377* 10293 TRAIP cuuaaguggUUCCCGUUGGAGa || |||:||| uuaaaaaaaAAAAACAAUCUCu 2 14 486 507 [hg19:3:49866029-49866050:-] 0.5432 125 0 -11.12 -0.4387 MIMAT0004702 hsa-miR-339-3p 10293 TRAIP gccGAGA-CAGCAGC---UCCG-CGAGu |||| ||| |:| :||| |||| gcaCUCUAGUCCUUGGCUGGGCUGCUCu 2 21 322 349 [hg19:3:49880849-49880876:-] 0.6948 122 0 -22.76 -0.1824 MIMAT0004703 hsa-miR-335* 10293 TRAIP ccAGUCCUCGUUA--UUACUUUUu ||| | ||| ||| |||| uuUCAUGUAAAAUAAAAUUAAAAa 2 21 469 492 [hg19:3:49866044-49866067:-] 0.5508 123 0 -3.63 -0.2436 MIMAT0001636 hsa-miR-452* 10293 TRAIP gugaaugaagaaacGUCUACUc ||||||| aacagccuuagaccCAGAUGAa 2 9 443 464 [hg19:3:49880734-49880755:-] 0.7245 140 7 -10.41 -0.8785 MIMAT0004762 hsa-miR-486-3p 10293 TRAIP uaGGACAUGACU-CGACGGGGc |||| || | ||||||| uuCCUGCCCUCACCCUGCCCCa 2 20 161 182 [hg19:3:49866354-49866375:-] 0.5302 154 7 -21.89 -0.2137 MIMAT0002812 hsa-miR-492 10293 TRAIP uucUUAGAACAGGGCGUCCAGGa :||| ||| | |||||||| acuGAUCCUGU-CAGCAGGUCCu 2 21 215 236 [hg19:3:49866300-49866321:-] 0.5623 166 7 -26.70 -0.1496 MIMAT0002812 hsa-miR-492 10293 TRAIP uucuuAGAACAGGGCGUCC-AGGa || |||: | |||| ||| ccugcUCCUGUUGC-CAGGCUCCu 2 19 234 256 [hg19:3:49866280-49866302:-] 0.5997 120 0 -18.31 -0.1618 MIMAT0002814 hsa-miR-432 10293 TRAIP ggUGGGUUACUGGAUGAGGUUCu :||: || || ||||||| gaGCCUCUUG--CU-CUCCAAGg 2 22 487 506 [hg19:3:49880692-49880711:-] 0.7245 144 7 -18.18 -0.1861 MIMAT0002815 hsa-miR-432* 10293 TRAIP ucuGUACCUCCUCGGUAGGUc ||| | | ||||||| uucCAUACUGUACCCAUCCAu 2 19 119 139 [hg19:3:49881059-49881079:-] 0.5638 150 7 -10.75 -0.5918 MIMAT0002859 hsa-miR-516b 10293 TRAIP uuUCACGAAG---AAUGGAG-GUCUa || |||| |||||| |||| caAGGCCUUCCCAGUACCUCACAGAg 2 21 202 227 [hg19:3:49880971-49880996:-] 0.5716 123 0 -19.74 -0.1298 MIMAT0002880 hsa-miR-508-3p 10293 TRAIP agaugagguuuuccgaUGUUAGu |||||| aaauuaaaaaaaaaaaACAAUCu 2 8 483 505 [hg19:3:49866031-49866053:-] 0.5508 120 6 -7.18 -0.1544 MIMAT0003253 hsa-miR-587 10293 TRAIP cacugaguaguggaUACCUUu |||||| gauguauggagaggAUGGAAg 2 8 446 466 [hg19:3:49866070-49866090:-] 0.5585 120 6 -10.90 -0.1040 MIMAT0003261 hsa-miR-593* 10293 TRAIP cgaCUCGUUACGGACCGACC-ACGGa |||||:| ||| ||||| |||| cagGAGCAGU-CCUUGCUGGAUGCCa 2 23 559 583 [hg19:3:49880615-49880639:-] 0.6894 148 0 -31.28 -0.7932 MIMAT0003275 hsa-miR-607 10293 TRAIP caauAUCUAGACCUAAACUUg |:||| ||||||| uugcUGGAU-GCCAUUUGAAa 2 18 571 590 [hg19:3:49880608-49880627:-] 0.6543 143 7 -11.38 -0.3182 MIMAT0003280 hsa-miR-612 10293 TRAIP uuccucgagUCUUCGGGAC-GGGUCg :||:|: :|| ||||| ---------GGAGGUAUUGCCCCAGa 2 17 1 17 [hg19:3:49881181-49881197:-] 0.5197 120 0 -17.83 -0.1650 MIMAT0004809 hsa-miR-628-5p 10293 TRAIP ggaGAUCAUUUAUACAGUCGUa | | |:| |||||||| agcCCACUGAUCCUGUCAGCAg 2 20 210 231 [hg19:3:49866305-49866326:-] 0.5249 151 7 -14.48 -0.1271 MIMAT0003302 hsa-miR-632 10293 TRAIP aggguguccUUCGUCUGUg ::||||||| gagguguaaGGGCAGACAa 2 11 106 124 [hg19:3:49866412-49866430:-] 0.5598 142 7 -14.54 -0.4163 MIMAT0003305 hsa-miR-635 10293 TRAIP ccuguaacaaAGUCACGGGUUCa ||| ||||||| ucaggcagccUCA--GCCCAAGc 2 14 354 374 [hg19:3:49866162-49866182:-] 0.5791 142 7 -17.56 -0.3303 MIMAT0003320 hsa-miR-650 10293 TRAIP caGGACUCUCGCGACG-GAGGa |:||: | ||||| |||| ucCUUGGCUGGGCUGCUCUCCu 2 20 331 352 [hg19:3:49880846-49880867:-] 0.6948 127 0 -25.62 -0.2250 MIMAT0003881 hsa-miR-668 10293 TRAIP caUCACCCGGCUCGGCUC-ACUGu ||| ||:| ||:||| |||| gaAGUCAGCUGUGCUGAGCUGACc 2 22 395 418 [hg19:3:49880780-49880803:-] 0.7245 137 0 -23.84 -0.3591 MIMAT0010251 hsa-miR-449c 10293 TRAIP ugucGGCGAUCGUUAUGUG-ACGGAu || |:|| | |||| ||||| cugaCCAAUGGCCAGACACAUGCCUg 2 22 12 37 [hg19:3:49866499-49866524:-] 0.5433 133 0 -22.94 -0.2047 MIMAT0010251 hsa-miR-449c 10293 TRAIP ugUCGGCGAUCGUUAUGU-GACGGAu |||| | ||| | :| |||||| ucAGCC-CAAGC-UUCUACCUGCCUu 2 24 364 387 [hg19:3:49866149-49866172:-] 0.5585 123 6 -26.34 -0.4210 MIMAT0010313 hsa-miR-762 10293 TRAIP cgagccggggccggGGUCGGGg ||||||| gggagcugacaugaCCAGCCCa 2 9 194 215 [hg19:3:49866321-49866342:-] 0.5249 140 7 -23.25 -0.6402 MIMAT0004908 hsa-miR-220b 10293 TRAIP uucacAGUCUGUGCC-ACCACc |||| | || ||||| uugcaUCAGCCUGGGUUGGUGa 2 17 467 488 [hg19:3:49880710-49880731:-] 0.7245 120 0 -14.53 -0.5198 MIMAT0004946 hsa-miR-744* 10293 TRAIP uccaACUCCA-AUCACCGU-UGUc |||||| || |||| ||| agccUGAGGUGUAAGGGCAGACAa 2 19 101 124 [hg19:3:49866412-49866435:-] 0.5598 129 0 -17.95 -0.3891 MIMAT0004979 hsa-miR-936 10293 TRAIP gaCGCUAAGGAGGGAGAUGACa |:|:||| | |||||||| aaGUGGUUCAU-ACUCUACUGa 2 21 273 293 [hg19:3:49880905-49880925:-] 0.6464 162 7 -24.19 -0.7114 MIMAT0004981 hsa-miR-938 10293 TRAIP ugacccaAGUGGAAAUUCCCGu | | | ||||||| accagccUGAGGUGUAAGGGCa 2 16 98 119 [hg19:3:49866417-49866438:-] 0.5598 143 7 -19.44 -0.3205 MIMAT0004983 hsa-miR-940 10293 TRAIP ccccucgcccccgGGACGGAa ||||||| gcccaagcuucuaCCUGCCUu 2 9 367 387 [hg19:3:49866149-49866169:-] 0.5585 140 7 -16.83 -0.6197 MIMAT0004984 hsa-miR-941 10293 TRAIP cguguACACGUGUGUCGG-CCCAc | ||||: ||||| |||| ugaauUUUGCAU-CAGCCUGGGUu 2 19 461 483 [hg19:3:49880715-49880737:-] 0.7245 128 0 -21.37 -0.3113 MIMAT0005572 hsa-miR-1225-5p 10293 TRAIP ggGGGGUGACCCGGCAUGGGUg |||: | |:||||||| ugCCCUUCCAUACUGUACCCAu 2 21 114 135 [hg19:3:49881063-49881084:-] 0.5638 152 7 -28.10 -0.7373 MIMAT0005576 hsa-miR-1226* 10293 TRAIP gggguagGUCCGGACGUACGGGAGUg | | :|| | |||||||| ccagagaCUGCUCUUCCUGCCCUCAc 2 20 148 173 [hg19:3:49866363-49866388:-] 0.5450 159 7 -28.75 -0.1423 MIMAT0005580 hsa-miR-1227 10293 TRAIP gaCCCCUUUUCCCACCGUGc | ||: :|| ||||||| guGAGGGUGAGUGUGGCACc 2 19 129 148 [hg19:3:49866388-49866407:-] 0.5598 158 7 -21.00 -0.1923 MIMAT0005586 hsa-miR-1231 10293 TRAIP cgUC-GACAGG---CGGGUCUGUg || ||| || | ||||||| ugAGUCUGACCAAUGGCCAGACAc 2 19 7 30 [hg19:3:49866506-49866529:-] 0.5433 148 7 -21.95 -0.5334 MIMAT0005871 hsa-miR-1207-5p 10293 TRAIP ggGGAGGGUCGGA--GGGACGGu |:|||:: ||| ||||||| cuCUUCCUGCCCUCACCCUGCCc 2 20 158 180 [hg19:3:49866356-49866378:-] 0.5302 162 7 -30.19 -0.1448 MIMAT0005872 hsa-miR-1207-3p 10293 TRAIP cuUUACUCCCGGUC-GACu :|||| |||||| ||| cuGAUGA-GGCCAGCCUGa 2 17 290 307 [hg19:3:49880891-49880908:-] 0.6650 126 0 -21.91 -0.6941 MIMAT0005873 hsa-miR-1208 10293 TRAIP aggcggacagaCUUGUCACu |||||||| -----------GAACAGUGa 2 10 1 9 [hg19:3:49866527-49866535:-] 0.5433 145 7 -13.23 -0.8182 MIMAT0005877 hsa-miR-1286 10293 TRAIP ucccgAGUAGAACCAGGACGu ||| | |||||||| uccugUCAGC-AGGUCCUGCu 2 17 220 239 [hg19:3:49866297-49866316:-] 0.5623 150 7 -17.97 -0.1127 MIMAT0005879 hsa-miR-1289 10293 TRAIP uuuuacGUCUAAGGACCUGAGGu |||| ||||||||| uugcccCAGA--ACUGGACUCCc 2 18 8 28 [hg19:3:49881170-49881190:-] 0.5197 154 7 -22.89 -0.1141 MIMAT0005884 hsa-miR-1294 10293 TRAIP ucUGUUGUUACGGU--UGGAGUGu | ::| | ||| ||||||| ucAAGGCCUUCCCAGUACCUCACa 2 21 201 224 [hg19:3:49880974-49880997:-] 0.5716 147 7 -18.41 -0.7131 MIMAT0005904 hsa-miR-1253 10293 TRAIP acgucCGACUAGAAGAA-GAGa | ||| | |||| ||| ggguuGGUGAGCCUCUUGCUCu 2 17 479 500 [hg19:3:49880698-49880719:-] 0.7245 120 0 -15.94 -0.1793 MIMAT0005905 hsa-miR-1254 10293 TRAIP ugACGUCCGAGGUC--GA-AGGUCCGa ||:||| || || || ||||||| cuUGUAGG-UCAAGGACUGUCCAGGCa 2 23 41 66 [hg19:3:49866470-49866495:-] 0.5433 162 7 -24.78 -0.5457 MIMAT0005905 hsa-miR-1254 10293 TRAIP ugacgUC-CGAGGU-CGAAG-GUCCGa || |||: | || || ||||| accagAGUGCUUGAGGCAUCUCAGGCa 2 20 334 360 [hg19:3:49866176-49866202:-] 0.5791 121 0 -23.04 -0.2287 MIMAT0005907 hsa-miR-1256 10293 TRAIP ucGAUCACUCUUCAGU-UACGGa | | ||: || || ||||| gaCCAAUGGCCAGACACAUGCCu 2 21 14 36 [hg19:3:49866500-49866522:-] 0.5433 120 0 -11.41 -0.1182 MIMAT0005910 hsa-miR-1259 10293 TRAIP uuuucgaUUC-AGUAGUAUAUa ||| |: ||||:|| aggauggAAGAUUUUCAUGUAa 2 15 457 478 [hg19:3:49866058-49866079:-] 0.5585 133 0 -7.42 -0.1301 MIMAT0005942 hsa-miR-1288 10293 TRAIP agAGGUCUAGUCC-CGUCAGGu | :||: |||| ||||||| cuUGUAGG-CAGGAGCAGUCCu 2 20 551 571 [hg19:3:49880627-49880647:-] 0.6894 156 7 -25.49 -0.6856 MIMAT0005788 hsa-miR-513b 10293 TRAIP uaUUUACUGUGG-AGGAACACUu ||| |: :|| ||||||||| ggAAAGGGAGCCAUCCUUGUGAa 2 21 592 614 [hg19:3:49880584-49880606:-] 0.6543 167 7 -21.82 -0.5533 MIMAT0007884 hsa-miR-1910 10293 TRAIP uccgcCGUCCGUGUCCUGACc |:|||: ||||||| aacuuGUAGGUCAAGGACUGu 2 17 39 59 [hg19:3:49866477-49866497:-] 0.5433 156 7 -20.01 -0.1078 MIMAT0007884 hsa-miR-1910 10293 TRAIP ucCGCCGUCCGUGUC-CUGACc |:|||| | ||| ||||| guGUGGCA--CCCAGAGACUGc 2 20 139 158 [hg19:3:49866378-49866397:-] 0.5450 124 0 -19.53 -0.1086 MIMAT0009451 hsa-miR-1976 10293 TRAIP ugUCGUUCCUCCCGUCCUCc :|| | |||||||| cuGGCCUUGUAGGCAGGAGc 2 19 546 565 [hg19:3:49880633-49880652:-] 0.7245 146 7 -17.18 -0.2882 MIMAT0011778 hsa-miR-2278 10293 TRAIP gguccguugugugUGACGAGAg :||||||| aguccuuggcuggGCUGCUCUc 2 10 329 350 [hg19:3:49880848-49880869:-] 0.6948 141 7 -21.41 -0.1184 MIMAT0011778 hsa-miR-2278 10293 TRAIP gguCCGU-UGUGUGUGACGAGAg |||| || | |||||||| uguGGCACCCAGAGACUGCUCUu 2 20 140 162 [hg19:3:49866374-49866396:-] 0.5450 162 7 -22.45 -0.1756 MIMAT0014978 hsa-miR-3116 10293 TRAIP ucagggaugauACAAGGUCCGu || ||||||| aggucaaggacUG-UCCAGGCa 2 12 46 66 [hg19:3:49866470-49866490:-] 0.5433 141 7 -22.44 -0.5114 MIMAT0014978 hsa-miR-3116 10293 TRAIP ucaGGGAUGA-UACAA-GGUCCGu :|||:|| |||| |||||| aggUCCUGCUCCUGUUGCCAGGCu 2 20 230 253 [hg19:3:49866283-49866306:-] 0.5623 134 6 -25.94 -0.2556 MIMAT0015377 hsa-miR-3126-3p 10293 TRAIP agacacacuGCCUACGGUCUAc | || ||||||| gcugcucucCUGA-GCCAGAUc 2 14 342 362 [hg19:3:49880836-49880856:-] 0.7245 143 7 -14.65 -0.7272 MIMAT0015377 hsa-miR-3126-3p 10293 TRAIP agacacacugccuacGGUCUAc |||||| ugaacagccuuagacCCAGAUg 2 8 441 462 [hg19:3:49880736-49880757:-] 0.7245 120 6 -13.11 -0.1219 MIMAT0015000 hsa-miR-3134 10293 TRAIP uuauacaucagaaaaUAGGUAGu ||||||| uuccauacuguacccAUCCAUCc 2 9 119 141 [hg19:3:49881057-49881079:-] 0.5638 140 7 -9.27 -0.2382 MIMAT0015023 hsa-miR-3150 10293 TRAIP gguuggagcuCCUAGAGGGGUc ||| ||||||| ccccagaacuGGA-CUCCCCAu 2 13 11 31 [hg19:3:49881167-49881187:-] 0.5197 146 7 -22.30 -0.1075 MIMAT0015024 hsa-miR-3151 10293 TRAIP ugGACUAGGGU--AACGGGGUGg ||| |:|| |||||||| ucCUGCCCUCACCCUGCCCCACu 2 20 162 184 [hg19:3:49866352-49866374:-] 0.5302 154 7 -28.18 -0.3215 MIMAT0015024 hsa-miR-3151 10293 TRAIP uggacuaggGUAACGGGGUGg || ||||||| uuuuguggaCAGAGCCCCACu 2 13 71 91 [hg19:3:49866445-49866465:-] 0.5697 144 7 -20.29 -0.5501 MIMAT0015028 hsa-miR-3154 10293 TRAIP agacgaGGGUUGAGGGG-AAGAc |: :||||||| |||| ccagaaCUGGACUCCCCAUUCUg 2 17 13 35 [hg19:3:49881163-49881185:-] 0.5197 128 0 -25.77 -0.1105 MIMAT0015044 hsa-miR-3169 10293 TRAIP gauACA-CGGUUCGUGUCAGGAu ||| | ||:| :||||||| ccuUGUAGGCAGGAGCAGUCCUu 2 20 550 572 [hg19:3:49880626-49880648:-] 0.6894 162 7 -22.17 -0.1935 MIMAT0015053 hsa-miR-3176 10293 TRAIP ggccaucagggUCCGGUCa ||||||| cucuacugaugAGGCCAGc 2 9 285 303 [hg19:3:49880895-49880913:-] 0.6464 140 7 -15.47 -0.5431 MIMAT0015063 hsa-miR-3183 10293 TRAIP aggcuCGCUGAGGCUCUCUCCg | ||: : :|||||| agcauGGGAUGUAUGGAGAGGa 2 18 439 460 [hg19:3:49866076-49866097:-] 0.5585 129 6 -18.43 -0.1495 MIMAT0015065 hsa-miR-3185 10293 TRAIP ggcgUCUGGCUGGCGGAAGAAGa ||:| |:| ||||||| auagAGGCAAAUC-ACUUCUUCc 2 20 89 110 [hg19:3:49881088-49881109:-] 0.5822 149 7 -16.88 -0.4616 MIMAT0015069 hsa-miR-3187 10293 TRAIP ggcgcGUCGGGGUACCGGUu | | || ||||||| ugaguCUGACCAAUGGCCAg 2 16 7 26 [hg19:3:49866510-49866529:-] 0.5433 151 7 -18.70 -0.5429 MIMAT0015072 hsa-miR-320e 10293 TRAIP ggaaGAGUUGGG-UCGAAa ||||:||| ||||| cagcCUCAGCCCAAGCUUc 2 15 359 377 [hg19:3:49866159-49866177:-] 0.5585 130 0 -20.39 -0.2632 MIMAT0015074 hsa-miR-3190-3p 10293 TRAIP gagagaccggcagaUGGAAGGu ||||||| ggccagccugaagaACCUUCCa 2 9 297 318 [hg19:3:49880880-49880901:-] 0.6650 140 7 -20.20 -1.0825 MIMAT0015089 hsa-miR-3202 10293 TRAIP uaauuucGAGAAGAGGGAAGGu | | |: ||||||| acuucuuCCCCUUGCCCUUCCa 2 16 102 123 [hg19:3:49881075-49881096:-] 0.5822 147 7 -20.58 -0.8325 MIMAT0016852 hsa-miR-4298 10293 TRAIP gaCGGAGGAGG-AGGACA-GGGUc ||| |:||| | |||| |||| uuGCC-CUUCCAUACUGUACCCAu 2 21 113 135 [hg19:3:49881063-49881085:-] 0.5638 129 0 -26.64 -0.5470 MIMAT0016860 hsa-miR-4307 10293 TRAIP ccuUUGUCCUUUUUUGUaa || | |||||||| auuAAAAAAAAAAAACAau 3 17 485 503 [hg19:3:49866033-49866051:-] 0.5432 136 0 -4.34 -0.1798 MIMAT0016863 hsa-miR-4311 10293 TRAIP gugugagucgAGAGAAag |||||| aaaaaaacaaUCUCUU-- 3 9 493 508 [hg19:3:49866028-49866043:-] 0.5432 120 0 -6.17 -0.3278 MIMAT0016877 hsa-miR-4256 10293 TRAIP uggaagUAGUCCAGUCUa || ||||||| gaucagAUGUGGUCAGAc 2 13 269 286 [hg19:3:49866250-49866267:-] 0.5997 144 7 -13.00 -0.5186 MIMAT0016896 hsa-miR-4268 10293 TRAIP guGUAGGACUCUCCUCCUCGg |||||| || |||||||| agCAUCCU-AG-GGAGGAGCa 2 20 367 385 [hg19:3:49880813-49880831:-] 0.7245 167 7 -30.00 -0.6476 MIMAT0016901 hsa-miR-4271 10293 TRAIP ggggUGGAAAAGAAGGGGg |:| ||||||||| gcaaAUCACUUCUUCCCCu 2 16 95 113 [hg19:3:49881085-49881103:-] 0.5822 155 7 -21.46 -0.9642 MIMAT0016906 hsa-miR-4274 10293 TRAIP gucccccUCCCUGACGAc || ||||||| ggcacccAGAGACUGCUc 2 12 143 160 [hg19:3:49866376-49866393:-] 0.5450 147 7 -11.10 -0.1673 MIMAT0016907 hsa-miR-4281 10293 TRAIP ggGGGGAG-GGGCCCUGGg |||| | ::||||||| agCCCCACUUUCGGGACCa 2 17 83 101 [hg19:3:49866435-49866453:-] 0.5780 155 7 -31.99 -0.6209 MIMAT0016908 hsa-miR-4277 10293 TRAIP caCAUGACACGAGUCUUGACg |||:|| | |||||||| agGUAUUG-CCCCAGAACUGg 2 20 3 22 [hg19:3:49881176-49881195:-] 0.5197 161 7 -20.11 -0.1042 MIMAT0016914 hsa-miR-4283 10293 TRAIP uuugagcGACUCGGGGu | ||||||| uuguggaCAGAGCCCCa 2 11 73 89 [hg19:3:49866447-49866463:-] 0.5697 142 7 -17.34 -0.3843 MIMAT0016915 hsa-miR-4284 10293 TRAIP uacCCCACUACACUCGGg |||| : ||||||| ccuGGGUUG-GUGAGCCu 2 16 476 492 [hg19:3:49880706-49880722:-] 0.7245 149 7 -20.57 -0.1724 MIMAT0016917 hsa-miR-4287 10293 TRAIP uuucacgggagUUCCCUCu ||||||| uuugaaagggaAAGGGAGc 2 9 584 602 [hg19:3:49880596-49880614:-] 0.6543 140 7 -13.49 -0.5344 MIMAT0016918 hsa-miR-4288 10293 TRAIP ccuuugagUCGUCUGUu :||||||| gguguaagGGCAGACAa 2 10 108 124 [hg19:3:49866412-49866428:-] 0.5598 141 7 -13.60 -0.4069 MIMAT0000080 hsa-miR-24 10293 TRAIP gacaagGACGACUUGACUCGGu ||||| ||||||| gcugggCUGCUCUCCUGAGCCa 2 17 337 358 [hg19:3:49880840-49880861:-] 0.6948 156 7 -27.48 -0.5286 MIMAT0000101 hsa-miR-103 10293 TRAIP agUAUCGGGACAUGU-UAC-GACGa ||:| || | ||| ||| |||| caAUGG-CCAG-ACACAUGCCUGCa 2 22 17 39 [hg19:3:49866497-49866519:-] 0.5433 120 0 -17.37 -0.2466 MIMAT0000104 hsa-miR-107 10293 TRAIP acUAUCGGGACAUGU-UAC-GACGa ||:| || | ||| ||| |||| caAUGG-CCAG-ACACAUGCCUGCa 2 22 17 39 [hg19:3:49866497-49866519:-] 0.5433 120 0 -17.17 -0.2466 MIMAT0000222 hsa-miR-192 10293 TRAIP ccGACAGUUAAGUAUCCAGUc ||| ||| |::||||||| gcCUG-CAACUUGUAGGUCAa 2 20 33 52 [hg19:3:49866484-49866503:-] 0.5433 165 7 -16.06 -0.3817 MIMAT0000250 hsa-miR-139-5p 10293 TRAIP gacCUCUGUGC--ACG-UG-ACAUCu || |||:| ||| || ||||| ccaGACACAUGCCUGCAACUUGUAGg 2 20 23 48 [hg19:3:49866488-49866513:-] 0.5433 125 0 -18.43 -0.1145 MIMAT0000255 hsa-miR-34a 10293 TRAIP ugUUGGU--CGAUUCUGUG-ACGGu :|||| | |||||| |||| cuGACCAAUGGCCAGACACAUGCCu 2 21 12 36 [hg19:3:49866500-49866524:-] 0.5433 123 0 -20.07 -0.1193 MIMAT0000261 hsa-miR-183 10293 TRAIP ucacUUAAG-AUGGUC-ACGGUAu |:| | |:|::| |||||| gagcAGUCCUUGCUGGAUGCCAUu 2 19 562 585 [hg19:3:49880613-49880636:-] 0.6894 121 6 -15.26 -0.5028 MIMAT0000265 hsa-miR-204 10293 TRAIP uccGU-AUCCUACUGUUUCCCUu || | | | |: ||||||| ugcCAUUUGAAAGGGAAAGGGAg 2 20 579 601 [hg19:3:49880597-49880619:-] 0.6543 150 7 -17.72 -0.2136 MIMAT0000266 hsa-miR-205 10293 TRAIP gucuGAGG-CCACCUUACU-UCCu |||| | || |||| ||| ugcuCUCCAAGGGGCAUGAGAGGc 2 19 495 518 [hg19:3:49880680-49880703:-] 0.7245 121 0 -18.36 -0.5197 MIMAT0000268 hsa-miR-211 10293 TRAIP uccgcuuCCUACUGUUUCCCUu | | |: ||||||| gccauuuGAAAGGGAAAGGGAg 2 16 580 601 [hg19:3:49880597-49880618:-] 0.6543 147 7 -16.50 -0.2136 MIMAT0000272 hsa-miR-215 10293 TRAIP caGACAGUUAAGUAUCCAGUa ||| ||| |::||||||| gcCUG-CAACUUGUAGGUCAa 2 20 33 52 [hg19:3:49866484-49866503:-] 0.5433 165 7 -16.30 -0.3817 MIMAT0000276 hsa-miR-219-5p 10293 TRAIP ucuuaacgcaaaccUGUUAGu |||||| auuaaaaaaaaaaaACAAUCu 2 8 485 505 [hg19:3:49866031-49866051:-] 0.5432 120 6 -5.16 -0.1583 MIMAT0000435 hsa-miR-143 10293 TRAIP cucGAUGUCACGAAGUA-GAGu | | |||| ||||| ||| uucCGAAAGUGGUUCAUACUCu 2 19 267 288 [hg19:3:49880910-49880931:-] 0.6278 130 0 -15.14 -0.5674 MIMAT0000436 hsa-miR-144 10293 TRAIP ucauguaGUAGAUAUGACAu | || ||||||| ccuugccCUUCCAUACUGUa 2 14 111 130 [hg19:3:49881068-49881087:-] 0.5638 149 7 -10.51 -0.5143 MIMAT0000436 hsa-miR-144 10293 TRAIP ucaUGUAGUAGAUAUG-ACAu |:||:: |||||| ||| gccAUAUUGGCUAUACUUGUg 2 18 154 174 [hg19:3:49881024-49881044:-] 0.5455 129 0 -13.77 -0.5021 MIMAT0004602 hsa-miR-125a-3p 10293 TRAIP ccgaGGGUUCUUGGAG-UGGACa |||||| |:|| ||||| ucagCCCAAG--CUUCUACCUGc 2 19 364 384 [hg19:3:49866152-49866172:-] 0.5585 127 0 -23.01 -0.2498 MIMAT0004602 hsa-miR-125a-3p 10293 TRAIP ccGAGGGUUCUUGGAGU-GGACa |||:: : ||||| |||| ugCUCUUCCUGCCCUCACCCUGc 2 21 156 178 [hg19:3:49866358-49866380:-] 0.5302 120 0 -21.84 -0.1547 MIMAT0000448 hsa-miR-136 10293 TRAIP aggUAGUAGUUUUGUUUACCUCa | || : :: :||||||| ccaAGCAGGGUGGGGAAUGGAGg 2 21 414 436 [hg19:3:49866100-49866122:-] 0.5585 144 7 -15.99 -0.1284 MIMAT0000450 hsa-miR-149 10293 TRAIP cccucacuucuguGCCUCGGUCu | ||||||| cugggcugcucucCUGAGCCAGa 2 11 338 360 [hg19:3:49880838-49880860:-] 0.6948 142 7 -20.70 -0.7325 MIMAT0000722 hsa-miR-370 10293 TRAIP uggucCAAGGUGGGGUCGUCCg | ||| : :||||||| ccacuGAUCC-UGUCAGCAGGu 2 18 213 233 [hg19:3:49866303-49866323:-] 0.5249 147 7 -21.20 -0.1401 MIMAT0000729 hsa-miR-376a 10293 TRAIP ugCACCUAAAAGGAGAU-ACUa |||| | | ||||| ||| aaGUGGUUCAUACUCUACUGAu 2 20 273 294 [hg19:3:49880904-49880925:-] 0.6464 127 0 -16.39 -0.5454 MIMAT0004693 hsa-miR-330-5p 10293 TRAIP cggAUUCUGUGUC-CGGGUCUCu |:|| ::::| ||||||| gggUGAG-UGUGGCACCCAGAGa 2 20 133 154 [hg19:3:49866382-49866403:-] 0.5450 144 7 -20.61 -0.2331 MIMAT0000752 hsa-miR-328 10293 TRAIP ugccuucccgUC-UCUCCCGGUc || | ||||||| ccaucccauaAGAAAAGGGCCAu 2 13 136 158 [hg19:3:49881040-49881062:-] 0.5455 143 7 -13.96 -0.7979 MIMAT0000756 hsa-miR-326 10293 TRAIP gacCUC-CUUCCCGGGUCUCc ||| | :| ||||||| gguGAGUGUGGCACCCAGAGa 2 18 134 154 [hg19:3:49866382-49866402:-] 0.5450 148 7 -19.16 -0.2310 MIMAT0000761 hsa-miR-324-5p 10293 TRAIP uguGGUUACGGG----AUCCCCUACGc |||:| ||: ||||||||| uucCCAGUACCUCACAGAGGGGAUGCu 2 21 209 235 [hg19:3:49880963-49880989:-] 0.5716 155 7 -26.10 -0.1724 MIMAT0000773 hsa-miR-346 10293 TRAIP ucuccgUCCGUACGCCCGUCUGu |||::| |||||||| agccugAGGUGUAAGGGCAGACa 2 18 101 123 [hg19:3:49866413-49866435:-] 0.5598 161 7 -25.22 -0.5712 MIMAT0001541 hsa-miR-449a 10293 TRAIP uggucgAUUGUUAUGUG-ACGGu |::| | |||| |||| gaccaaUGGCCAGACACAUGCCu 2 17 14 36 [hg19:3:49866500-49866522:-] 0.5433 120 0 -18.04 -0.1205 MIMAT0002172 hsa-miR-376b 10293 TRAIP uugUACCUAAAAGGAGAU-ACUa :||| | | ||||| ||| aaaGUGGUUCAUACUCUACUGAu 2 20 272 294 [hg19:3:49880904-49880926:-] 0.6464 123 0 -14.41 -0.5454 MIMAT0002175 hsa-miR-485-5p 10293 TRAIP cuuaaGUAGUGCCGGUCGGAGa |||| | | ||||||| ugaggCAUCUCAGGCAGCCUCa 2 18 345 366 [hg19:3:49866170-49866191:-] 0.5791 161 7 -22.18 -0.5418 MIMAT0002876 hsa-miR-505 10293 TRAIP ucCUUUGGU--C-GUUCACAACUGc ||:|||| | || ||||||| ugGAGACCACGGUCACUUGUUGACu 2 21 299 323 [hg19:3:49866213-49866237:-] 0.5997 158 7 -20.96 -0.2385 MIMAT0004801 hsa-miR-590-3p 10293 TRAIP ugaucGAAUA-UGUAUUUUAAu | |:| | |||||||| auuuuCAUGUAAAAUAAAAUUa 2 17 467 488 [hg19:3:49866048-49866069:-] 0.5508 151 7 -6.31 -1.3309 MIMAT0003327 hsa-miR-449b 10293 TRAIP cggucgAUUGUUAUGUG-ACGGa |::| | |||| |||| gaccaaUGGCCAGACACAUGCCu 2 17 14 36 [hg19:3:49866500-49866522:-] 0.5433 120 0 -19.36 -0.1205 MIMAT0004926 hsa-miR-708 10293 TRAIP gggUCGAUCUAACAU-UCG-AGGAa ||| |||| | ||| |||| cugAGCCAGAUCAAACAGCAUCCUa 2 21 351 375 [hg19:3:49880823-49880847:-] 0.7245 123 0 -15.19 -0.6984

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G003515 MO000029987 TRAIP Homo sapiens 10293 26369285 -9 27 R69742; HS$TRAIP_01; Binding factors: E2F , E2F-1 , E2F-2

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End TRAIP; RNF206; TRIP 1 502 100 5.01 - chr3 49866033 49866535 TRAIP; RNF206; TRIP 503 508 0.2 5.01 - chr3 49866027 49866033

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile TRAIP hsa-miR-1208 beg:0 end:10 pic:3' AGGCGGACAGACTTGTCACT 5'& ||||||||| &5' -----------GAACAGTGA 3' TRAIP hsa-miR-1910 beg:41 end:58 pic:3' TCCGCCGTCCGTGTCCTGACC 5'& |.|||. ||||||| &5' -----GTAGGTCAAGGACTG- 3' TRAIP hsa-miR-940 beg:369 end:388 pic:3' CCCCTCGCCCCCGGGACGGAA 5'& ||| |||||||| &5' ----AGCTTCTA-CCTGCCTT 3' TRAIP ebv-miR-BART15 beg:200 end:221 pic:3' AGTTCCTTTGTTTTGGTGACTG 5'& || .|| |. |||||||. &5' -CAT---GACCAGCCCACTGAT 3' TRAIP ebv-miR-BART19-5p beg:420 end:433 pic:3' GTACAGTACAAACGCCCCTTACA 5'& |.|||||||| &5' ------------GTGGGGAATG- 3' TRAIP ebv-miR-BART2-3p beg:145 end:163 pic:3' AAATAAAAGAGGTTTA--GCGAGGAA 5'& |||.| .||||.| &5' ----------CCAGAGACTGCTCTT- 3' TRAIP ebv-miR-BART4 beg:345 end:371 pic:3' TCGTGTGGT-CGTCGTAGTCCAG 5'& .|||. || ||||| |||| | &5' GGCATCTCAGGCAGCCTCAGCCC 3' TRAIP hsa-miR-3151 beg:165 end:184 pic:3' TGGACTAGGGTAACGGGGTGG 5'& ||| ||| ||||||||. &5' -CCTCA-CCC--TGCCCCACT 3' TRAIP hsa-miR-141star beg:455 end:469 pic:3' AGGTTGTGACATGACCTTCTAC 5'& | |||||||| &5' ---------GGA-TGGAAGAT- 3' TRAIP hsa-miR-346 beg:104 end:124 pic:3' TCTCCGTCCGTACGCCCGTCTGT 5'& ||||. |.| ||||||||| &5' -GAGGT--GTAA--GGGCAGACA 3' TRAIP hsa-miR-1286 beg:222 end:239 pic:3' TCCCGAGTAGAACCAGGACGT 5'& ||| |||||||| &5' -----TCAGCA-GGTCCTGC- 3' TRAIP hcmv-miR-UL148D beg:441 end:464 pic:3' GCCACTTCTT-CCCCTCCTGCT 5'& || || | || |||||.|. &5' -GG-GATGTATGGAGAGGATGG 3' TRAIP hcmv-miR-US25-2-5p beg:142 end:160 pic:3' AGTAGGTGGACTTGTCTGGCGA 5'& |||| | ||||.||| &5' -----CACCC--AGAGACTGCT 3' TRAIP hsa-let-7f beg:370 end:388 pic:3' TTGATATGTTAGAT-GATGGAGT 5'& .| |||| ||.|||. &5' ------GCT-TCTACCTGCCTT- 3' TRAIP hsa-miR-1207-5p beg:155 end:180 pic:3' GGGGAGGGTCGGA---GGGACGGT 5'& |.||.|| ||| ||||||| &5' -CTCTTCCTGCCCTCACCCTGCC- 3' TRAIP hsa-miR-1227 beg:127 end:148 pic:3' GAC-CCCTTTTCCCACCGTGC 5'& || ||| .|| ||||||| &5' -TGAGGGT-GAGTGTGGCAC- 3' TRAIP hsa-miR-1227 beg:422 end:445 pic:3' GACCCCTTTTC-CCAC-CGTGC 5'& ||||||| .| || |||.| &5' -TGGGGAATGGAGGATAGCATG 3' TRAIP hsa-miR-1229 beg:407 end:429 pic:3' GACACCCTCC-CGTCACCACTCTC 5'& |||| |||| ||||.|. &5' ---TGGGCCAAGCAG-GGTGGGG- 3' TRAIP hsa-miR-1237 beg:440 end:465 pic:3' GACCCC-C-TGCCTCGTCTTCCT 5'& |||| | |.|||| .|| ||| &5' -TGGGATGTATGGAGAGGATGGA 3' TRAIP hsa-miR-1254 beg:49 end:66 pic:3' TGACGTCCGAGGTCGAAGGTCCGA 5'& ||| | ||||||| &5' -----AGGA--CTG--TCCAGGC- 3' TRAIP hsa-miR-1260 beg:408 end:429 pic:3' ACCAC---CGTCTCCACCCTA 5'& || |||| ||||||. &5' -GGGCCAAGCAG-GGTGGGG- 3' TRAIP hsa-miR-1260b beg:407 end:429 pic:3' TACCAC---CGTCACCACCCTA 5'& ||| |||| ||||||. &5' -TGGGCCAAGCAG-GGTGGGG- 3' TRAIP hsa-miR-1273 beg:229 end:249 pic:3' TTCTTTCTCAGAACGAA-ACAGCGGG 5'& .||| |||| |||.||| &5' -------GGTCCTGCTCCTGTTGCC- 3' TRAIP hsa-miR-1281 beg:125 end:146 pic:3' CC-CTCTC-CTC-CTCCGCT 5'& || |||.| ||| | ||| &5' GGTGAGGGTGAGTGTGGC-- 3' TRAIP hsa-miR-1284 beg:436 end:456 pic:3' CTTTTCGGTCCCAGACATATCT 5'& ||| ||| |||||.|| &5' ----AGCATGGGA-TGTATGGA 3' TRAIP hsa-miR-1304 beg:346 end:368 pic:3' GTGTAGAGTGACATCGGAGTTT 5'& .||||||| | |||||||. &5' -GCATCTCAG-GCAGCCTCAG- 3' TRAIP hsa-miR-1322 beg:345 end:367 pic:3' GTCGTAG---TCGTCGTAGTAG 5'& .||||| .||||| ||| &5' -GGCATCTCAGGCAGCCTCA-- 3' TRAIP hsa-miR-133a beg:319 end:340 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& ||| | ||||||.| &5' ---CTGTCTCT-GTGGACCAGA 3' TRAIP hsa-miR-133b beg:319 end:340 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& ||| | ||||||.| &5' ---CTGTCTCT-GTGGACCAGA 3' TRAIP hsa-miR-139-5p beg:313 end:335 pic:3' GACCTCTGTGCACGTGACATCT 5'& || ||| .|| | ||||.|| &5' -TGTTGAC-TGT-CTCTGTGGA 3' TRAIP hsa-miR-143 beg:336 end:357 pic:3' CTCGATGTCACGAA----GTAGAGT 5'& ||||||| ||||||| &5' -------AGTGCTTGAGGCATCTCA 3' TRAIP hsa-miR-149 beg:11 end:28 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& ||| .|||||| &5' ---------GACCAATGGCCAGA 3' TRAIP hsa-miR-1538 beg:398 end:416 pic:3' TCCTTGTCGTCGTCGGGCCCGGC 5'& .||| .||||.||||| &5' ------GGCA-TAGCCTGGGCC- 3' TRAIP hsa-miR-1827 beg:373 end:388 pic:3' TAAGTTAGAT-GACGGAGT 5'& |||| ||||||. &5' ------TCTACCTGCCTT- 3' TRAIP hsa-miR-18astar beg:100 end:121 pic:3' GGTCTTCCTCGTGAATCCCGTCA 5'& || .||| |.| ||||||| &5' CCT-GAGGTGTA---AGGGCAG- 3' TRAIP hsa-miR-1908 beg:162 end:180 pic:3' CTGGTTAGCGGCA--GGGGCGGC 5'& .||| |||.||| &5' -------TGCCCTCACCCTGCC- 3' TRAIP hsa-miR-1915star beg:404 end:429 pic:3' CCGGGCCCG--TCGTTCCGTTCCA 5'& |||.|||| ||||.|| .|| &5' -GCCTGGGCCAAGCAGGGTGGGG- 3' TRAIP hsa-miR-192 beg:32 end:52 pic:3' CCGACAGTTAAGTATCCAGTC 5'& ||| ||| | ||||||| &5' --CTG-CAACTTGTAGGTCA- 3' TRAIP hsa-miR-193bstar beg:347 end:371 pic:3' AGTAGAG--CG--GGAGTTTTGGGGC 5'& |||||| || ||||| .||| &5' -CATCTCAGGCAGCCTCA--GCCC-- 3' TRAIP hsa-miR-194star beg:197 end:219 pic:3' GTCTATTGTC---GTCGGGGTGACC 5'& |.||| ||| ||||||| &5' ----TGACATGACCAG-CCCACTG- 3' TRAIP hsa-miR-196astar beg:228 end:249 pic:3' GAGTCCGTCAA-AGAACAACGGC 5'& ||||. | || ||||||| &5' --CAGGTCCTGCTCCTGTTGCC- 3' TRAIP hsa-miR-202star beg:429 end:448 pic:3' GTTTCTTCATATACGTATCCTT 5'& .||.| ||| ||||.||| &5' ---GGAGG-ATA-GCATGGGA- 3' TRAIP hsa-miR-205 beg:416 end:438 pic:3' GTCTGAGGCCACCTTACTTCCT 5'& |||. .|| ||||||.|||| &5' CAGGG--TGG-GGAATGGAGGA 3' TRAIP hsa-miR-214 beg:225 end:247 pic:3' TGACGGACA-GACACGGACGACA 5'& || || ||| ||||.|| &5' ---GCAGGTCCTGCTCCTGTTG- 3' TRAIP hsa-miR-215 beg:32 end:52 pic:3' CAGACAGTTAAGTATCCAGTA 5'& ||| ||| | ||||||| &5' --CTG-CAACTTGTAGGTCA- 3' TRAIP hsa-miR-222 beg:262 end:282 pic:3' TGGGTCATCGGTCTACATCGA 5'& ||| |. |||||||.|. &5' --CCA-TGATCAGATGTGGT- 3' TRAIP hsa-miR-2355 beg:411 end:430 pic:3' AACAGGTAACATAGACCCCTA 5'& ||| |||||| &5' ----CCAAGCAGGGTGGGGA- 3' TRAIP hsa-miR-28-5p beg:238 end:257 pic:3' GAGTTATCTGAC-AC---TCGAGGAA 5'& ||| || .|||||| &5' ---------CTGTTGCCAGGCTCCT- 3' TRAIP hsa-miR-2861 beg:235 end:256 pic:3' GGCGGGTGGCGGTCCGGGG 5'& | || ..|||||||.|| &5' -CTCCTGTTGCCAGGCTCC 3' TRAIP hsa-miR-2909 beg:438 end:462 pic:3' GGTTCTCTACA-ACCGGGATTG 5'& || |.||||| ||| .|. &5' -CATGGGATGTATGGAGAGGAT 3' TRAIP hsa-miR-29b-2star beg:289 end:307 pic:3' GATTCGGTGGTACACTTTGGTC 5'& ||..||| || ||.|||| &5' CTGGGCC----TG-GAGACCA- 3' TRAIP hsa-miR-30a beg:244 end:264 pic:3' GAAGGTCAGCTCCTACAAATGT 5'& |||| ||||||.| &5' ---CCAGGCTCC--TGTTTATA 3' TRAIP hsa-miR-30d beg:244 end:264 pic:3' GAAGGTCAGCCCCTACAAATGT 5'& |||| ||||||.| &5' ---CCAGGCTCC--TGTTTATA 3' TRAIP hsa-miR-30dstar beg:114 end:140 pic:3' CGTC-GTTTGTAGACTGACTTTC 5'& |||| |||||| ||| | .|| &5' GCAGACAAACAGGTGAGGGTGAG 3' TRAIP hsa-miR-30e beg:244 end:264 pic:3' GAAGGTCAGTTCCTACAAATGT 5'& |||| ||||||.| &5' ---CCAGGCTCC--TGTTTATA 3' TRAIP hsa-miR-3128 beg:241 end:250 pic:3' TACTCTCAAAAAATGAACGGTCT 5'& ||||||| &5' ---------------TTGCCAG- 3' TRAIP hsa-miR-3139 beg:238 end:258 pic:3' TTGTCCGTAGACAAC---TCGAGGAT 5'& |||||| .||||||. &5' ---------CTGTTGCCAGGCTCCTG 3' TRAIP hsa-miR-3141 beg:152 end:172 pic:3' AGGAGGAGGTGGGCGGGAG 5'& || |||. ||.|||||| &5' --CTGCTCTTCCTGCCCTC 3' TRAIP hsa-miR-3141 beg:159 end:182 pic:3' AGGA-GGAGGTGGG-CGGGAG 5'& |||| || ||||| |||| | &5' TCCTGCCCTCACCCTGCCC-C 3' TRAIP hsa-miR-3151 beg:69 end:92 pic:3' TGGACTAGGGTAACGGGGTGG 5'& ..|| || |||||||. &5' -TTTGTGGACAGAGCCCCACT 3' TRAIP hsa-miR-3170 beg:161 end:183 pic:3' TGACAGACA-GAGTCT--TGGGGTC 5'& ||| |||| .||||| &5' -----CTGCCCTCACCCTGCCCCA- 3' TRAIP hsa-miR-3172 beg:74 end:90 pic:3' ATTCCTGACGTTTTGGGGT 5'& |||| |.|.||||| &5' ---GGAC---AGAGCCCCA 3' TRAIP hsa-miR-3183 beg:441 end:460 pic:3' AGGCTCGCTGAGGCTCTCTCCG 5'& | ||. .|||||| &5' -----GGGATGTATGGAGAGG- 3' TRAIP hsa-miR-3196 beg:163 end:182 pic:3' CTCCGGGGAC--GGCGGGGC 5'& ||||. |.||||| &5' ---GCCCTCACCCTGCCCC- 3' TRAIP hsa-miR-3200 beg:404 end:426 pic:3' GTCTGGACTCATCGCGTTCCAC 5'& .||||.| |||.|||| &5' ---GCCTGGGCCAAGCAGGGTG 3' TRAIP hsa-miR-326 beg:134 end:154 pic:3' GAC-CTCCTTCCC-GGGTCTCC 5'& | ||| || ||||||| &5' --GTGAGTGTGGCACCCAGAG- 3' TRAIP hsa-miR-331-5p beg:17 end:38 pic:3' CCTAGGGACC---CTG-GTATGGATC 5'& ||| ||| |||.|||. &5' -------TGGCCAGACACATGCCTG- 3' TRAIP hsa-miR-377star beg:347 end:366 pic:3' CTTAAGTGGTTCCCGTTGGAGA 5'& ||.| ||||.|||| &5' -----CATCTCAGGCAGCCTC- 3' TRAIP hsa-miR-378 beg:285 end:307 pic:3' GGAAGACTGAGG--TTCAGGTCA 5'& |.|||||. || .|| ||| &5' CTTTCTGGG-CCTGGAGACCA-- 3' TRAIP hsa-miR-382 beg:25 end:44 pic:3' GCTTAGGTG-GTGCTTGTTGAAG 5'& ||| ..| .|||||| &5' ------CACATGCCTGCAACTT- 3' TRAIP hsa-miR-383 beg:299 end:324 pic:3' TC-GGTGTTAGTGGAAGACTAGA 5'& || ||||..||||.| .||| || &5' AGACCACGGTCACTTGTTGA-CT 3' TRAIP hsa-miR-412 beg:113 end:133 pic:3' TGCCGATCACCTGGTCCACTTCA 5'& ||| || |||||||.| &5' --GGC-AGACAAACAGGTGAGG- 3' TRAIP hsa-miR-423-3p beg:350 end:376 pic:3' TGACTCCC-CGGAGTCTGGCTCGA 5'& || ||| ||||||| || |||| &5' -CTCAGGCAGCCTCAGCCCAAGCT 3' TRAIP hsa-miR-4253 beg:20 end:37 pic:3' TGGGGGACCTGTACGGGA 5'& || |||||||. &5' ---CCAGACACATGCCT- 3' TRAIP hsa-miR-4256 beg:262 end:286 pic:3' TGGAAGTAGT-----CCAGTCTA 5'& .|| | |||| ||||||| &5' GCCATGATCAGATGTGGTCAGA- 3' TRAIP hsa-miR-4262 beg:123 end:143 pic:3' GTCCA-TCAGACTTACAG 5'& ||||| || |||.||| &5' CAGGTGAGGGTGAGTGT- 3' TRAIP hsa-miR-4263 beg:409 end:429 pic:3' CCGGTTCCGTGA-ATCTTA 5'& |||||| ||| |.|.. &5' GGCCAA-GCAGGGTGGGG- 3' TRAIP hsa-miR-4272 beg:304 end:322 pic:3' TGTTAGTGATCAACTTAC 5'& ||..||||| ||||| &5' ACGGTCACTTGTTGA--- 3' TRAIP hsa-miR-4277 beg:39 end:60 pic:3' CACATGACA-CGAG-TCTTGACG 5'& .||| | || ||.||||. &5' -----TTGTAGGTCAAGGACTGT 3' TRAIP hsa-miR-4283 beg:69 end:90 pic:3' TTTGAGCGA----CTCGGGGT 5'& .|.|. |||||||| &5' ---TTTGTGGACAGAGCCCCA 3' TRAIP hsa-miR-4286 beg:408 end:429 pic:3' CCATGGTC---CTCACCCCA 5'& || .||| |.|||||| &5' GG-GCCAAGCAGGGTGGGG- 3' TRAIP hsa-miR-4288 beg:105 end:125 pic:3' CCTTTGAGTCGTCTGTT 5'& || .|||||||| &5' GGTGTAAGGGCAGACAA 3' TRAIP hsa-miR-4292 beg:47 end:65 pic:3' GGTTCC-GGCCGGGTCCCC 5'& ||||| |. |.||||| &5' -CAAGGACT-GTCCAGG-- 3' TRAIP hsa-miR-4294 beg:237 end:257 pic:3' GGGACGACA-TCTGAGGG 5'& ||||.|| ||.||||. &5' -CCTGTTGCCAGGCTCCT 3' TRAIP hsa-miR-4296 beg:291 end:309 pic:3' ACTCGGA-CTCGGGTGTA 5'& |.|||| ||| ||||. &5' -GGGCCTGGAGACCACG- 3' TRAIP hsa-miR-4300 beg:363 end:380 pic:3' CTTCATCAGG-TCGAGGGT 5'& || || ||||.|.| &5' -----AGCCCAAGCTTCTA 3' TRAIP hsa-miR-4303 beg:319 end:341 pic:3' GACAG-GA-GTCGAGTCTT 5'& ||||| || ..| ||||. &5' CTGTCTCTGTGGACCAGAG 3' TRAIP hsa-miR-4312 beg:421 end:442 pic:3' ACCCCTGTCCTTGTTCCGG 5'& |||||| |||. | || &5' TGGGGAATGGAGGATAGC- 3' TRAIP hsa-miR-4324 beg:342 end:359 pic:3' AATTCCAATCCCAGAGTCCC 5'& |.||| ||||||| &5' -TGAGGCA----TCTCAGG- 3' TRAIP hsa-miR-4327 beg:244 end:267 pic:3' GGTCAGGGGGTACGT-TCGG 5'& |||| |.||..| |||| &5' CCAGGCTCCTGTTTATAGCC 3' TRAIP hsa-miR-484 beg:92 end:108 pic:3' TAGCCCTCCCCTGACTCGGACT 5'& ||||| ||||||| &5' --------GGGACC-AGCCTGA 3' TRAIP hsa-miR-485-3p beg:429 end:455 pic:3' TCTCTCCTCTCGG---C-ACATACTG 5'& .||||| ||| | ||||||. &5' --GGAGGATAGCATGGGATGTATGG- 3' TRAIP hsa-miR-486-3p beg:159 end:182 pic:3' TAGGACATGACTC-GACGGGGC 5'& ||||| || ||||||| &5' -TCCTGCCCTCACCCTGCCCC- 3' TRAIP hsa-miR-490-5p beg:95 end:117 pic:3' TGGGTGGACCTCTAGGTACC 5'& ||| .||| |||.| .| || &5' ACCAGCCT-GAGGTGTAAGG 3' TRAIP hsa-miR-515-5p beg:414 end:438 pic:3' GTC-TTTCACGAAAGAAAACCTCTT 5'& || |..||| |||||.| &5' -AGCAGGGTGGGGAA---TGGAGGA 3' TRAIP hsa-miR-518cstar beg:132 end:155 pic:3' GTCTTTCACGAAGGGAGGTCTCT 5'& .| .||||. | | ||||||| &5' -GGTGAGTGTGGCAC-CCAGAGA 3' TRAIP hsa-miR-518e beg:323 end:346 pic:3' GTGAGACTTCCC---TTCGCGAAA 5'& ||||| || .||.|||| &5' --CTCTGT-GGACCAGAGTGCTT- 3' TRAIP hsa-miR-548m beg:367 end:390 pic:3' GTTTTT-GGTGTTTATGGAAAC 5'& |||. |.|| |.|||||| &5' CAAGCTTCTACC--TGCCTTTG 3' TRAIP hsa-miR-574-3p beg:125 end:144 pic:3' ACACCCACACACGTACTCGCAC 5'& |||| | .||||.||| &5' ----GGTGA--GGGTGAGTGTG 3' TRAIP hsa-miR-575 beg:237 end:255 pic:3' CGAGGACA--GGTTGACCGAG 5'& ||||||| ||| ||||| &5' -CTCCTGTTGCCA---GGCTC 3' TRAIP hsa-miR-584 beg:235 end:271 pic:3' GAGT-CAG-GGTCCGT---------TTGGTATT 5'& ||| ||. |||||| |.||||.| &5' CTCCTGTTGCCAGGCTCCTGTTTATAGCCATGA 3' TRAIP hsa-miR-597 beg:129 end:148 pic:3' TGTCACCAGTAGCTCACTGTGT 5'& || ||| | |||.||| &5' --AG-GGTGAGT--GTGGCAC- 3' TRAIP hsa-miR-628-5p beg:210 end:231 pic:3' GGAGATCATTTATACAGTCGTA 5'& || ||. |||||||| &5' CCACTGATCC---TGTCAGCA- 3' TRAIP hsa-miR-630 beg:324 end:342 pic:3' TGGAAGGGACCATGTCTTATGA 5'& ||. ||| ||||.|.| &5' ----TCTGTGGACCAGAGTGC- 3' TRAIP hsa-miR-632 beg:104 end:124 pic:3' AGGGTGTCC-----TTCGTCTGTG 5'& ||| ..||||||| &5' ------AGGTGTAAGGGCAGACA- 3' TRAIP hsa-miR-635 beg:354 end:374 pic:3' CCTGTAACAAAGTCACGGGTTCA 5'& |.|| ||| ||||||| &5' -GGCAGCC--TCA--GCCCAAG- 3' TRAIP hsa-miR-650 beg:366 end:389 pic:3' CAGGACTCTCGC-----GACGGAGGA 5'& || ||| ||||||.. &5' --CCCA--AGCTTCTACCTGCCTTT- 3' TRAIP hsa-miR-662 beg:404 end:429 pic:3' GAC-GACCCGG--TGTTGCACCCT 5'& | ||||||| .||. |||||. &5' --GCCTGGGCCAAGCAGGGTGGGG 3' TRAIP hsa-miR-663 beg:160 end:180 pic:3' CGCCAGGGCGCC-GCGGGGCGGA 5'& |||.|| | |||.||| &5' ----TCCTGCCCTCACCCTGCC- 3' TRAIP hsa-miR-708 beg:237 end:257 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& || |.|. |.|||||| &5' -CCTGTTGCC----AGGCTCCT- 3' TRAIP hsa-miR-761 beg:228 end:248 pic:3' ACACAGTCAAAG-TG-GGACGACG 5'& ||| .| ||||.||| &5' -----CAGGTCCTGCTCCTGTTGC 3' TRAIP hsa-miR-762 beg:88 end:106 pic:3' CGAGCCGGGGCCGGGGTCGGGG 5'& . ||| ||||||. &5' ------TTTCGGGACCAGCCT- 3' TRAIP hsa-miR-762 beg:350 end:371 pic:3' CGAG-CCGGGGCCGGGGTCGGGG 5'& ||| ||| |||.|||||| &5' -CTCAGGCA---GCCTCAGCCC- 3' TRAIP hsa-miR-877 beg:170 end:193 pic:3' GGGACGCGGTAGAGGAGA-TG 5'& |||||| ||| ||||| || &5' CCCTGCCCCA-CTCCTACGAC 3' TRAIP hsa-miR-939 beg:347 end:371 pic:3' GTGGGGGTC-TCGGAGTCGAGGGGT 5'& ||.|.| .| ||||||||| || &5' CATCTCAGGCAGCCTCAGC-CC--- 3' TRAIP hsv1-miR-H4star beg:343 end:362 pic:3' TGATCGCTCAATCT-GTCCGTTC 5'& ||| ||||||. &5' ------GAGGCATCTCAGGCAG- 3' TRAIP hsv1-miR-H4star beg:50 end:69 pic:3' TGATCGCTCAATCTGTCCGTTC 5'& |. |. ||||||.| &5' ------GGACTGTCCAGGCAGG 3' TRAIP hsv1-miR-H7 beg:275 end:292 pic:3' GGAAACCAACGTCTGGGGAAA 5'& |||| |||||.|.|| &5' ----TGGT--CAGACTCTTT- 3' TRAIP hsv1-miR-H8 beg:93 end:114 pic:3' CTTGGG-GGACTGGGATATAT 5'& |.||| ||||| .|.|| &5' GGACCAGCCTGAG---GTGTA 3' TRAIP hsv2-miR-H6star beg:442 end:464 pic:3' TCCTACCTTCCCGTCTTCTACCC 5'& .||||| || |||.||||| &5' GGGATGTAT-GG-AGAGGATGG- 3'

DNA & RNA Element - SomamiR Gene Name Mutation Mutation ID miR ID Chromosome Location Ref Alt mirsite mirseed Seed Class Sample Name Cancer Type TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-1233-5p chr3 49831957 C T ccagCTCCCAgcatg AGUGGGAG m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-1273h-5p chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGG m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-1287-5p chr3 49831957 C T ccagctcCCAGCAtg UGCUGGAU m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-1343-5p chr3 49831957 C T ccaGCTCCCagcatg UGGGGAGC m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-204-3p chr3 49831957 C T ccagcTCCCAGCatg GCUGGGAA m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-2278 chr3 49831957 C T ccaGCTCTCagcatg GAGAGCAG m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-27b-5p chr3 49831957 C T ccAGCTCTcagcatg AGAGCUUA m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-30b-3p chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGG m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-30c-1-3p chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGA m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-30c-2-3p chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGA m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-3192-5p chr3 49831957 C T ccagCTCCCAGcatg UCUGGGAG m7b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-3670 chr3 49831957 C T ccAGCTCTcagcatg AGAGCUCA m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-3689a-3p chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGG m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-3689b-3p chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGG m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-3689c chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGG m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-3692-5p chr3 49831957 C T ccagctcCCAGCAtg CCUGCUGG m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4251 chr3 49831957 C T ccagcTCTCAGcatg CCUGAGAA m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4298 chr3 49831957 C T ccagcTCCCAGcatg CUGGGACA m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4300 chr3 49831957 C T ccAGCTCCCAgcatg UGGGAGCU m8a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4314 chr3 49831957 C T ccagcTCCCAGcatg CUCUGGGA m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4324 chr3 49831957 C T ccagcTCTCAGcatg CCCUGAGA m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4329 chr3 49831957 C T ccagcTCTCAGcatg CCUGAGAC m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4486 chr3 49831957 C T ccagctCCCAGCatg GCUGGGCG m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4487 chr3 49831957 C T CCAGCTCTcagcatg AGAGCUGG m8a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4505 chr3 49831957 C T ccagctCCCAGCatg AGGCUGGG m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4646-5p chr3 49831957 C T ccagcTCCCAGcatg ACUGGGAA m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4663 chr3 49831957 C T ccagctCTCAGCatg AGCUGAGC m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4693-3p chr3 49831957 C T ccagCTCTCAgcatg UGAGAGUG m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4712-3p chr3 49831957 C T ccagCTCTCAgcatg AAUGAGAG m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4728-3p chr3 49831957 C T ccagctcTCAGCATg CAUGCUGA m7b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4728-5p chr3 49831957 C T ccagCTCCCAgcatg UGGGAGGG m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-4731-5p chr3 49831957 C T ccagctCCCAGCAtg UGCUGGGG m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-505-5p chr3 49831957 C T ccaGCTCCCagcatg GGGAGCCA m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-5580-5p chr3 49831957 C T ccagctcCCAGCAtg UGCUGGCU m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-5589-5p chr3 49831957 C T ccagctCCCAGCatg GGCUGGGU m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-5591-5p chr3 49831957 C T ccAGCTCCCAgcatg UGGGAGCU m8a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-5787 chr3 49831957 C T ccagctCCCAGCatg GGGCUGGG m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6090 chr3 49831957 C T ccaGCTCCCagcatg GGGGAGCG m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-612 chr3 49831957 C T ccagctCCCAGCatg GCUGGGCA m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-619-5p chr3 49831957 C T ccagcTCCCAGCatg GCUGGGAU m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-628-5p chr3 49831957 C T ccagctcTCAGCATg AUGCUGAC m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6500-5p chr3 49831957 C T ccAGCTCCcagcatg AGGAGCUA m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6506-5p chr3 49831957 C T ccagcTCCCAGcatg ACUGGGAU m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6726-5p chr3 49831957 C T ccAGCTCCCagcatg CGGGAGCU m7b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6731-5p chr3 49831957 C T ccagCTCCCAgcatg UGGGAGAG m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6761-5p chr3 49831957 C T ccagCTCTCAGcatg UCUGAGAG m7b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6778-5p chr3 49831957 C T ccagCTCCCAgcatg AGUGGGAG m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6779-5p chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGG m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6780a-5p chr3 49831957 C T ccagCTCCCAgcatg UUGGGAGG m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6785-5p chr3 49831957 C T ccagCTCCCAgcatg UGGGAGGG m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6788-5p chr3 49831957 C T ccagCTCCCAGcatg CUGGGAGA m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6827-5p chr3 49831957 C T ccaGCTCCCAgcatg UGGGAGCC m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6871-5p chr3 49831957 C T ccagCTCCCAgcatg CAUGGGAG m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-6874-5p chr3 49831957 C T ccAGCTCCcagcatg AUGGAGCU m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-708-5p chr3 49831957 C T ccAGCTCCcagcatg AAGGAGCU m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-7106-5p chr3 49831957 C T ccagCTCCCAgcatg UGGGAGGA m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-7160-5p chr3 49831957 C T ccagctCTCAGCAtg UGCUGAGG m7a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-769-3p chr3 49831957 C T ccagcTCCCAGcatg CUGGGAUC m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-8075 chr3 49831957 C T ccagctcTCAGCAtg UGCUGAUG m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-8077 chr3 49831957 C T ccagctCTCAGCatg GGCUGAGU m6b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-8085 chr3 49831957 C T ccagCTCCCAgcatg UGGGAGAG m6a TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-887-5p chr3 49831957 C T ccagCTCCCAgcatg CUUGGGAG m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-920 chr3 49831957 C T ccAGCTCCCagcatg GGGGAGCU m7b TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-93-3p chr3 49831957 C T ccagctcTCAGCAtg ACUGCUGA m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831957C>T COSM4118622 hsa-miR-939-5p chr3 49831957 C T ccaGCTCCCagcatg UGGGGAGC m6c TCGA-HU-A4H8-01 [stomach][NS][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-128-1-5p chr3 49831971 C T cccagccCGGCCCtc CGGGGCCG m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-128-2-5p chr3 49831971 C T cccagccCGGCCCtc GGGGGCCG m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-1911-3p chr3 49831971 C T cccaGCCTGGccctc CACCAGGC m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-3155a chr3 49831971 C T cccAGCCTGGccctc CCAGGCUC m7a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-3155b chr3 49831971 C T cccAGCCTGGccctc CCAGGCUC m7a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-3194-5p chr3 49831971 C T cccagcCTGGCCctc GGCCAGCC m6a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-3620-5p chr3 49831971 C T ccCAGCCCggccctc GUGGGCUG m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-3944-3p chr3 49831971 C T cccAGCCCGgccctc UUCGGGCU m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4419b chr3 49831971 C T ccCAGCCTggccctc GAGGCUGA m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4430 chr3 49831971 C T cCCAGCCTggccctc AGGCUGGA m7a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4435 chr3 49831971 C T cccagcCTGGCCctc AUGGCCAG m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4438 chr3 49831971 C T cccAGCCTGgccctc CACAGGCU m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4446-3p chr3 49831971 C T ccCAGCCCggccctc CAGGGCUG m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4640-5p chr3 49831971 C T cccagcCTGGCCCtc UGGGCCAG m7b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4645-5p chr3 49831971 C T cccaGCCTGGccctc ACCAGGCA m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4656 chr3 49831971 C T ccCAGCCCggccctc UGGGCUGA m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4673 chr3 49831971 C T cccaGCCTGGccctc UCCAGGCA m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4675 chr3 49831971 C T ccCAGCCCggccctc GGGGCUGU m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4726-5p chr3 49831971 C T cccagcCTGGCCCTc AGGGCCAG m8a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4741 chr3 49831971 C T ccCAGCCCGgccctc CGGGCUGU m7a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4743-5p chr3 49831971 C T cccagcCCGGCCctc UGGCCGGA m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-4755-3p chr3 49831971 C T cccaGCCTGGCcctc AGCCAGGC m7b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-484 chr3 49831971 C T cccAGCCTGgccctc UCAGGCUC m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-485-5p chr3 49831971 C T ccCAGCCTggccctc AGAGGCUG m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-5006-5p chr3 49831971 C T cccagCCTGGCcctc UUGCCAGG m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-5787 chr3 49831971 C T CCCAGCCCggccctc GGGCUGGG m8a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6508-3p chr3 49831971 C T cccagccTGGCCCtc UGGGCCAU m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6762-5p chr3 49831971 C T cccagccTGGCCCtc CGGGGCCA m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6781-5p chr3 49831971 C T cccagcCCGGCCCtc CGGGCCGG m7b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6784-5p chr3 49831971 C T cccagCCCGGCcctc GCCGGGGC m6a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6829-5p chr3 49831971 C T ccCAGCCCggccctc UGGGCUGC m6b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6845-5p chr3 49831971 C T cccagccTGGCCCtc CGGGGCCA m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6877-5p chr3 49831971 C T cccagccCGGCCCTc AGGGCCGA m7a TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6884-5p chr3 49831971 C T ccCAGCCTggccctc AGAGGCUG m6c TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-6895-5p chr3 49831971 C T cccagccTGGCCCTc CAGGGCCA m7b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831971C>T COSM190697 hsa-miR-762 chr3 49831971 C T cCCAGCCCggccctc GGGGCUGG m7b TCGA-AA-A01R-01 [large_intestine][colon][carcinoma][adenocarcinoma] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-1233-5p chr3 49831979 C T gatactCTCCCAgcc AGUGGGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-1273h-5p chr3 49831979 C T gatactCTCCCAGcc CUGGGAGG m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-1275 chr3 49831979 C T gatacTCCCCCAgcc GUGGGGGA m7b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-1343-5p chr3 49831979 C T gataCTCCCCcagcc UGGGGAGC m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-185-5p chr3 49831979 C T gataCTCTCCcagcc UGGAGAGA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-204-3p chr3 49831979 C T gatactcTCCCAGCc GCUGGGAA m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-30b-3p chr3 49831979 C T gatactCTCCCAGcc CUGGGAGG m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-30c-1-3p chr3 49831979 C T gatacTCTCCCAGcc CUGGGAGA m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-30c-2-3p chr3 49831979 C T gatacTCTCCCAGcc CUGGGAGA m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-3150a-3p chr3 49831979 C T gataCTCCCCcagcc CUGGGGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-3170 chr3 49831979 C T gatactcCCCCAGcc CUGGGGUU m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-3175 chr3 49831979 C T gatacTCTCCCagcc CGGGGAGA m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-3192-5p chr3 49831979 C T gatactCTCCCAGcc UCUGGGAG m7b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-3689a-3p chr3 49831979 C T gatactCTCCCAGcc CUGGGAGG m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-3689b-3p chr3 49831979 C T gatactCTCCCAGcc CUGGGAGG m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-3689c chr3 49831979 C T gatactCTCCCAGcc CUGGGAGG m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4271 chr3 49831979 C T gatacTCCCCCagcc GGGGGAAG m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4294 chr3 49831979 C T gatACTCCCccagcc GGGAGUCU m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4298 chr3 49831979 C T gatactcTCCCAGcc CUGGGACA m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4300 chr3 49831979 C T gatactCTCCCAgcc UGGGAGCU m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4306 chr3 49831979 C T gataCTCTCCcagcc UGGAGAGA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4314 chr3 49831979 C T gatactcTCCCAGcc CUCUGGGA m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4447 chr3 49831979 C T gatactCCCCCAgcc GGUGGGGG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4472 chr3 49831979 C T gatactCCCCCAgcc GGUGGGGG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4516 chr3 49831979 C T gatacTCTCCCagcc GGGAGAAG m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4525 chr3 49831979 C T gatacTCCCCCagcc GGGGGGAU m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4644 chr3 49831979 C T gataCTCTCCcagcc UGGAGAGA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4646-5p chr3 49831979 C T gatactcTCCCAGcc ACUGGGAA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4665-5p chr3 49831979 C T gatacTCCCCCAGcc CUGGGGGA m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4667-5p chr3 49831979 C T gatactcCCCCAGcc ACUGGGGA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4693-3p chr3 49831979 C T gatACTCTCccagcc UGAGAGUG m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4700-5p chr3 49831979 C T gatactcCCCCAGcc UCUGGGGA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4716-3p chr3 49831979 C T gatacTCCCCCagcc AAGGGGGA m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4723-5p chr3 49831979 C T gataCTCCCCCAgcc UGGGGGAG m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4728-5p chr3 49831979 C T gatactCTCCCAgcc UGGGAGGG m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-4731-5p chr3 49831979 C T gatactcCCCCAGCc UGCUGGGG m7b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-5010-5p chr3 49831979 C T gatacTCCCCCagcc AGGGGGAU m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-504-3p chr3 49831979 C T gatACTCCCccagcc GGGAGUGC m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-5192 chr3 49831979 C T gatACTCTCCcagcc AGGAGAGU m7b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-5591-5p chr3 49831979 C T gatactCTCCCAgcc UGGGAGCU m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-5698 chr3 49831979 C T gataCTCCCCCAgcc UGGGGGAG m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-5739 chr3 49831979 C T gataCTCTCCcagcc GCGGAGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6090 chr3 49831979 C T gataCTCCCCcagcc GGGGAGCG m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-619-5p chr3 49831979 C T gatactcTCCCAGCc GCUGGGAU m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-625-5p chr3 49831979 C T gatacTCCCCCagcc AGGGGGAA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-637 chr3 49831979 C T gatactCCCCCAGcc ACUGGGGG m7b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6506-5p chr3 49831979 C T gatactcTCCCAGcc ACUGGGAU m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6731-5p chr3 49831979 C T gataCTCTCCCAgcc UGGGAGAG m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6746-5p chr3 49831979 C T gatacTCTCCCagcc CCGGGAGA m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6751-5p chr3 49831979 C T gatactCCCCCAgcc UUGGGGGU m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6760-5p chr3 49831979 C T gatacTCTCCCagcc CAGGGAGA m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6763-5p chr3 49831979 C T gataCTCCCCcagcc CUGGGGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6777-5p chr3 49831979 C T gataCTCCCCcagcc ACGGGGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6778-5p chr3 49831979 C T gatactCTCCCAgcc AGUGGGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6779-5p chr3 49831979 C T gatactCTCCCAGcc CUGGGAGG m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6780a-5p chr3 49831979 C T gatactCTCCCAgcc UUGGGAGG m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6785-5p chr3 49831979 C T gatactCTCCCAgcc UGGGAGGG m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6788-5p chr3 49831979 C T gatacTCTCCCAGcc CUGGGAGA m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6794-5p chr3 49831979 C T gatacTCCCCCagcc CAGGGGGA m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6795-5p chr3 49831979 C T gatacTCCCCCagcc UGGGGGGA m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6799-5p chr3 49831979 C T gataCTCCCCcagcc GGGGAGGU m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6803-5p chr3 49831979 C T gatactCCCCCAGcc CUGGGGGU m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6825-5p chr3 49831979 C T gataCTCCCCcagcc UGGGGAGG m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6827-5p chr3 49831979 C T gatactCTCCCAgcc UGGGAGCC m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6842-5p chr3 49831979 C T gatactCCCCCAgcc UGGGGGUG m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6846-5p chr3 49831979 C T gatactCCCCCAgcc UGGGGGCU m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6848-5p chr3 49831979 C T gatactCCCCCAgcc UGGGGGCU m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6852-5p chr3 49831979 C T gatactcCCCCAGcc CCCUGGGG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6870-5p chr3 49831979 C T gataCTCCCCCAgcc UGGGGGAG m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6871-5p chr3 49831979 C T gatactCTCCCAgcc CAUGGGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6878-5p chr3 49831979 C T gatacTCTCCCagcc AGGGAGAA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6887-5p chr3 49831979 C T gatacTCCCCCagcc UGGGGGGA m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-6889-5p chr3 49831979 C T gataCTCCCCcagcc UCGGGGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-7106-5p chr3 49831979 C T gatactCTCCCAgcc UGGGAGGA m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-7109-5p chr3 49831979 C T gatactCCCCCAGcc CUGGGGGG m7a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-7110-5p chr3 49831979 C T gatactCCCCCAgcc UGGGGGUG m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-7111-5p chr3 49831979 C T gataCTCCCCCAgcc UGGGGGAG m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-7155-5p chr3 49831979 C T gatactcCCCCAGcc UCUGGGGU m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-769-3p chr3 49831979 C T gatactcTCCCAGcc CUGGGAUC m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-8085 chr3 49831979 C T gataCTCTCCCAgcc UGGGAGAG m8a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-8089 chr3 49831979 C T gatactcCCCCAGcc CCUGGGGA m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-887-5p chr3 49831979 C T gatactCTCCCAgcc CUUGGGAG m6c TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-920 chr3 49831979 C T gataCTCCCCcagcc GGGGAGCU m6a TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49831979C>T COSM3916284 hsa-miR-939-5p chr3 49831979 C T gataCTCCCCcagcc UGGGGAGC m6b TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-1253 chr3 49847576 C G agcTCTTCTttgatc AGAGAAGA m6c TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-186-5p chr3 49847576 C G agctcTTCTTTGatc CAAAGAAU m7a TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-3133 chr3 49847576 C G agctcTTCTTTgatc UAAAGAAC m6b TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-3185 chr3 49847576 C G agctCTTCTTtgatc AGAAGAAG m6c TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-335-5p chr3 49847576 C G aGCTCTTGtttgatc UCAAGAGC m7b TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-3653-3p chr3 49847576 C G agctCTTCTTtgatc CUAAGAAG m6c TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-371a-5p chr3 49847576 C G agctcttGTTTGAtc ACUCAAAC m6c TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-4699-5p chr3 49847576 C G agcTCTTCTttgatc AGAAGAUU m6a TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-4709-3p chr3 49847576 C G agCTCTTCtttgatc UUGAAGAG m6c TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-495-3p chr3 49847576 C G agctcTTGTTTgatc AAACAAAC m6a TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-5197-3p chr3 49847576 C G agCTCTTCTTtgatc AAGAAGAG m8a TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-548u chr3 49847576 C G agctctTCTTTGatc CAAAGACU m6a TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-583 chr3 49847576 C G agctctTCTTTGatc CAAAGAGG m6a TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-6077 chr3 49847576 C G agCTCTTCtttgatc GGGAAGAG m6c TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma] TRAIP chr3:g.49847576C>G COSM731240 hsa-miR-6715b-3p chr3 49847576 C G agctcttGTTTGAtc CUCAAACC m6b TCGA-34-5928-01 [lung][NS][carcinoma][squamous_cell_carcinoma]

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region TRAIP High_conserved miR-130ac/301ab/301b/301b-3p/454/721/4295/3666 chr3:49893862 7-mer-A1 31 CDS, ncRNA TRAIP High_conserved miR-7/7ab chr3:49866567 7-mer-A1 0 3pUTR, CDS, ncRNA TRAIP High_conserved miR-133abc chr3:49879939 7-mer-A1 49 CDS, ncRNA TRAIP High_conserved miR-96/507/1271 chr3:49866805 7-mer-m8 11 3pUTR, ncRNA TRAIP High_conserved miR-143/1721/4770 chr3:49866180 7-mer-A1 11 3pUTR, ncRNA TRAIP High_conserved miR-144 chr3:49881068 8-mer 24 ncRNA TRAIP High_conserved miR-145 chr3:49881174 7-mer-m8 9 ncRNA TRAIP High_conserved miR-145 chr3:49882002 7-mer-m8 73 CDS, ncRNA TRAIP High_conserved miR-148ab-3p/152 chr3:49881437 7-mer-A1 13 ncRNA TRAIP High_conserved miR-150/5127 chr3:49877162 7-mer-A1 20 3pUTR TRAIP High_conserved miR-153 chr3:49867466 7-mer-A1 13 3pUTR, CDS TRAIP High_conserved let-7/98/4458/4500 chr3:49880976 7-mer-A1 13 ncRNA TRAIP High_conserved miR-192/215 chr3:49866484 8-mer 13 3pUTR, ncRNA TRAIP High_conserved miR-193/193b/193a-3p chr3:49877233 7-mer-m8 22 3pUTR, CDS, ncRNA TRAIP High_conserved miR-204/204b/211 chr3:49880597 7-mer-m8 36 ncRNA TRAIP High_conserved miR-204/204b/211 chr3:49880603 8-mer 49 ncRNA TRAIP High_conserved miR-204/204b/211 chr3:49881447 7-mer-m8 27 ncRNA TRAIP High_conserved miR-21/590-5p chr3:49885012 7-mer-m8 51 CDS, ncRNA TRAIP High_conserved miR-214/761/3619-5p chr3:49881410 7-mer-A1 4 ncRNA TRAIP High_conserved miR-218/218a chr3:49879930 8-mer 9 CDS, ncRNA TRAIP High_conserved miR-22/22-3p chr3:49877973 7-mer-m8 27 ncRNA TRAIP High_conserved miR-221/222/222ab/1928 chr3:49893925 7-mer-A1 13 5pUTR, ncRNA TRAIP High_conserved miR-223 chr3:49866652 7-mer-A1 38 3pUTR, CDS, ncRNA TRAIP High_conserved miR-122/122a/1352 chr3:49867497 7-mer-m8 16 CDS TRAIP High_conserved miR-24/24ab/24-3p chr3:49866738 7-mer-m8 24 3pUTR, ncRNA TRAIP High_conserved miR-24/24ab/24-3p chr3:49880840 8-mer 13 ncRNA TRAIP High_conserved miR-101/101ab chr3:49879272 7-mer-m8 27 CDS TRAIP High_conserved miR-101/101ab chr3:49881068 7-mer-A1 27 ncRNA TRAIP High_conserved miR-31 chr3:49866729 7-mer-m8 0 3pUTR, ncRNA TRAIP High_conserved miR-31 chr3:49884996 7-mer-m8 16 CDS, ncRNA TRAIP High_conserved miR-103a/107/107ab chr3:49877265 8-mer 33 3pUTR, CDS, ncRNA TRAIP High_conserved miR-124/124ab/506 chr3:49866576 7-mer-m8 11 3pUTR, CDS, ncRNA TRAIP High_conserved miR-124/124ab/506 chr3:49867131 7-mer-m8 47 3pUTR, CDS, ncRNA TRAIP High_conserved miR-338/338-3p chr3:49880620 7-mer-A1 42 ncRNA TRAIP High_conserved miR-125a-5p/125b-5p/351/670/4319 chr3:49878465 7-mer-m8 38 CDS TRAIP High_conserved miR-490-3p chr3:49885038 7-mer-m8 56 CDS, ncRNA TRAIP Medium_conserved miR-505/505-3p chr3:49866213 7-mer-m8 33 3pUTR, ncRNA TRAIP Medium_conserved miR-544/544ab/544-3p chr3:49884966 7-mer-m8 56 CDS, ncRNA TRAIP Medium_conserved miR-590-3p chr3:49866048 8-mer 7 3pUTR TRAIP Medium_conserved miR-615-3p chr3:49866915 7-mer-m8 16 3pUTR, CDS, ncRNA TRAIP Medium_conserved miR-758 chr3:49877170 7-mer-m8 13 3pUTR TRAIP Medium_conserved miR-134/3118 chr3:49869349 7-mer-A1 13 CDS, ncRNA TRAIP Medium_conserved miR-874 chr3:49877853 7-mer-m8 20 ncRNA TRAIP Medium_conserved miR-875-5p chr3:49881189 7-mer-m8 11 ncRNA TRAIP Medium_conserved miR-136 chr3:49866079 7-mer-A1 13 3pUTR, ncRNA TRAIP Medium_conserved miR-136 chr3:49866100 7-mer-m8 13 3pUTR, ncRNA TRAIP Medium_conserved miR-149 chr3:49867153 8-mer 42 3pUTR, CDS, ncRNA TRAIP Medium_conserved miR-149 chr3:49879347 7-mer-m8 69 CDS TRAIP Medium_conserved miR-149 chr3:49880838 8-mer 60 ncRNA TRAIP Medium_conserved miR-185/882/3473/4306/4644 chr3:49880695 7-mer-A1 42 ncRNA TRAIP Medium_conserved miR-202-3p chr3:49880976 7-mer-A1 13 ncRNA TRAIP Medium_conserved miR-28-5p/708/1407/1653/3139 chr3:49866662 7-mer-m8 13 ncRNA TRAIP Medium_conserved miR-290-5p/292-5p/371-5p/293 chr3:49885614 8-mer 38 CDS, ncRNA TRAIP Medium_conserved miR-320abcd/4429 chr3:49881982 7-mer-m8 49 CDS, ncRNA TRAIP Medium_conserved miR-324-5p chr3:49880963 7-mer-m8 13 ncRNA TRAIP Medium_conserved miR-324-5p chr3:49884970 7-mer-A1 49 CDS, ncRNA TRAIP Medium_conserved miR-326/330/330-5p chr3:49866382 8-mer 22 3pUTR, ncRNA TRAIP Medium_conserved miR-328a/328b-3p chr3:49866119 7-mer-A1 18 3pUTR, ncRNA TRAIP Medium_conserved miR-328a/328b-3p chr3:49881040 7-mer-m8 16 ncRNA TRAIP Medium_conserved miR-346 chr3:49866413 8-mer 16 3pUTR, ncRNA TRAIP Medium_conserved miR-346 chr3:49877798 7-mer-A1 42 CDS, ncRNA TRAIP Medium_conserved miR-370 chr3:49866303 7-mer-m8 29 3pUTR, ncRNA TRAIP Medium_conserved miR-370 chr3:49877866 8-mer 29 ncRNA TRAIP Medium_conserved miR-370 chr3:49879949 8-mer 56 CDS, ncRNA TRAIP Medium_conserved miR-370 chr3:49881271 7-mer-m8 22 CDS, ncRNA TRAIP Medium_conserved miR-378/422a/378bcdefhi chr3:49893891 7-mer-m8 22 5pUTR, ncRNA TRAIP Medium_conserved miR-411 chr3:49877790 7-mer-m8 42 CDS, ncRNA TRAIP Medium_conserved miR-433 chr3:49877292 7-mer-m8 22 3pUTR, CDS, ncRNA TRAIP Medium_conserved miR-448/448-3p chr3:49867466 8-mer 13 3pUTR, CDS TRAIP Medium_conserved miR-127/127-3p chr3:49879321 7-mer-A1 56 CDS TRAIP Medium_conserved miR-485-5p/1698/1703/1962 chr3:49866170 8-mer 20 3pUTR, ncRNA TRAIP Medium_conserved miR-485-5p/1698/1703/1962 chr3:49866798 8-mer 36 3pUTR, ncRNA TRAIP Medium_conserved miR-485-5p/1698/1703/1962 chr3:49877939 7-mer-A1 13 ncRNA TRAIP Medium_conserved miR-486-5p/3107 chr3:49877178 7-mer-m8 13 3pUTR TRAIP Medium_conserved miR-495/1192 chr3:49877197 7-mer-m8 51 3pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score TRAIP RAID00066932 hsa-miR-370-3p miRNA MIMAT0000722 TRAIP mRNA 10293 Prediction 0.2202 TRAIP RAID00072262 hsa-miR-449a miRNA MIMAT0001541 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID00076064 hsa-miR-485-5p miRNA MIMAT0002175 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID00290474 hsa-miR-211-5p miRNA MIMAT0000268 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID00524407 hsa-miR-144-3p miRNA MIMAT0000436 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID00680412 hsa-miR-215-5p miRNA MIMAT0000272 TRAIP mRNA 10293 Microarray//Prediction 0.6308 TRAIP RAID00851165 hsa-miR-93-3p miRNA MIMAT0004509 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID00874658 hsa-miR-183-5p miRNA MIMAT0000261 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID00917843 hsa-miR-495-5p miRNA MIMAT0022924 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID00939618 hsa-miR-192-5p miRNA MIMAT0000222 TRAIP mRNA 10293 Microarray//Prediction 0.6308 TRAIP RAID01042634 hsa-miR-326 miRNA MIMAT0000756 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01248576 hsa-miR-376b-3p miRNA MIMAT0002172 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01294861 hsa-miR-34a-5p miRNA MIMAT0000255 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01296051 hsa-miR-708-5p miRNA MIMAT0004926 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01322523 hsa-miR-219a-5p miRNA MIMAT0000276 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01453670 hsa-miR-330-5p miRNA MIMAT0004693 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01469634 hsa-miR-204-5p miRNA MIMAT0000265 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01475936 hsa-miR-139-5p miRNA MIMAT0000250 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01551043 hsa-miR-124-3p miRNA MIMAT0000422 TRAIP mRNA 10293 Microarray 0.5483 TRAIP RAID01553409 hsa-miR-328-3p miRNA MIMAT0000752 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01578425 hsa-miR-4775 miRNA MIMAT0019931 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01663393 hsa-miR-452-3p miRNA MIMAT0001636 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01753532 hsa-miR-940 miRNA MIMAT0004983 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID01759092 hsa-miR-103a-3p miRNA MIMAT0000101 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02017616 hsa-miR-6893-5p miRNA MIMAT0027686 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02199014 hsa-miR-505-3p miRNA MIMAT0002876 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02259936 hsa-miR-3151-5p miRNA MIMAT0015024 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02308754 hsa-miR-376a-3p miRNA MIMAT0000729 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02412654 hsa-miR-221-5p miRNA MIMAT0004568 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02413304 hsa-miR-107 miRNA MIMAT0000104 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02468484 hsa-miR-4492 miRNA MIMAT0019027 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02631425 hsa-miR-125a-3p miRNA MIMAT0004602 TRAIP mRNA 10293 CLIP-seq//Prediction 0.6308 TRAIP RAID02801577 hsa-miR-24-3p miRNA MIMAT0000080 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02822203 hsa-miR-346 miRNA MIMAT0000773 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02827543 hsa-miR-6511b-5p miRNA MIMAT0025847 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02854771 hsa-miR-5001-5p miRNA MIMAT0021021 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02973031 hsa-miR-136-5p miRNA MIMAT0000448 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID02981300 hsa-miR-143-3p miRNA MIMAT0000435 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03104166 hsa-miR-205-5p miRNA MIMAT0000266 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03193891 hsa-miR-590-3p miRNA MIMAT0004801 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03252020 hsa-miR-4433b-3p miRNA MIMAT0030414 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03341234 hsa-miR-149-5p miRNA MIMAT0000450 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03421950 hsa-miR-8073 miRNA MIMAT0031000 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03444126 hsa-miR-6808-5p miRNA MIMAT0027516 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03503311 hsa-miR-324-5p miRNA MIMAT0000761 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03598166 hsa-miR-6865-3p miRNA MIMAT0027631 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03831587 hsa-miR-4281 miRNA MIMAT0016907 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03873433 hsa-miR-6893-3p miRNA MIMAT0027687 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID03990370 hsa-miR-7152-3p miRNA MIMAT0028215 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID04029650 hsa-miR-449b-5p miRNA MIMAT0003327 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID04058309 hsa-miR-6811-5p miRNA MIMAT0027522 TRAIP mRNA 10293 Prediction 0.1828 TRAIP RAID05240544 TUG1 lncRNA 55000 TRAIP protein 10293 Microarray//RNA-seq 0.6606