DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004574 mmu-miR-294* 30948 Bin1 ucuaucccgGAGGUAAAACUca :|:::|||||| cuguuuuugUUUUGUUUUGAaa 3 14 82 103 [mm9:18:32594978-32594999:+] 0.5635 129 0 -7.80 -0.1249 MIMAT0004627 mmu-miR-20a* 30948 Bin1 gaaauUCACGAGCAUUACGUCa ||||:|| ||||||| gcccuAGUGUUCAAAAUGCAGc 2 18 436 457 [mm9:18:32595332-32595353:+] 0.6024 165 7 -19.26 -0.7780 MIMAT0004628 mmu-miR-21* 30948 Bin1 cuGUC-GGGUAGCUGACGACAAc ||| || | || ||||||| ugCAGACCAACCGUGUGCUGUUu 2 21 405 427 [mm9:18:32595301-32595323:+] 0.6024 159 7 -19.66 -0.3242 MIMAT0004629 mmu-miR-22* 30948 Bin1 auUUCGAACGGU---GACUUCUUGa |: ||| ||: |||||||| ggAGCCUUCCCGAGUGUGAAGAACc 2 21 5 29 [mm9:18:32594901-32594925:+] 0.6362 151 7 -17.76 -0.6246 MIMAT0004633 mmu-miR-27a* 30948 Bin1 acgaguguuCGUCGAUUCGGGa | | ||||||| gugcuguuuGAAAAUAAGCCCu 2 14 419 440 [mm9:18:32595315-32595336:+] 0.6024 141 7 -17.27 -1.0772 MIMAT0004638 mmu-miR-323-5p 30948 Bin1 cgcUUGCGCGGUGCCUGGUGGa ||| :| || |||||| aaaAACCUGACA-AAACCACCc 2 20 474 494 [mm9:18:32595370-32595390:+] 0.6024 121 6 -14.47 -0.1113 MIMAT0004670 mmu-miR-7a* 30948 Bin1 auaccgucugacacuAAACAAc |||||| ugugcuuuucuuuucUUUGUUu 2 8 45 66 [mm9:18:32594941-32594962:+] 0.5635 120 6 -4.33 -0.1148 MIMAT0001342 mmu-miR-425* 30948 Bin1 ccGCCUGUGCUGUAAGGGCUa |||| : | | ||||||| --CGGAGGAG-CCUUCCCGAg 2 20 1 18 [mm9:18:32594897-32594914:+] 0.6362 153 7 -19.58 -0.6618 MIMAT0001342 mmu-miR-425* 30948 Bin1 ccgccuguGCUGUAAGGGCUa :|| :||||||| ccccuaguUGA-GUUCCCGAu 2 14 241 260 [mm9:18:32595137-32595156:+] 0.6115 143 7 -16.10 -0.2153 MIMAT0014815 mmu-miR-3099* 30948 Bin1 guucccgaccuucCUUCGACc ||||||| cuccaguguuccuGAAGCUGc 2 9 212 232 [mm9:18:32595108-32595128:+] 0.6019 140 7 -9.99 -0.2908 MIMAT0003737 mmu-miR-666-5p 30948 Bin1 ccgagagugucgacACGGGCGa ||||||| aguugaguucccgaUGCCCGCa 2 9 246 267 [mm9:18:32595142-32595163:+] 0.6115 140 7 -18.00 -0.5290 MIMAT0004823 mmu-miR-666-3p 30948 Bin1 ucgucCGCUAGUGCGACGUCGg |:| ||| |||||| cccuaGUGUUCAAAAUGCAGCg 2 18 437 458 [mm9:18:32595333-32595354:+] 0.6024 125 6 -16.21 -0.1125 MIMAT0003898 mmu-miR-760 30948 Bin1 aggGGUGUCUGGGUCUCGGc ||: :|:: ||||||| gggCCGGGGGUGCAGAGCCa 2 18 278 297 [mm9:18:32595174-32595193:+] 0.5669 153 7 -24.44 -0.1409 MIMAT0003476 mmu-miR-669b 30948 Bin1 ugUACGUGUACGUGUGUUUUGa | | | | | ||||||| aaAAGAAAAACCUGACAAAACc 2 21 469 490 [mm9:18:32595365-32595386:+] 0.6024 144 7 -8.15 -0.2613 MIMAT0003514 mmu-miR-718 30948 Bin1 gcUGUGGGCCGGCCCGCCUUc | ||: || |||||||| ggAAACUGGG--GGGCGGAAa 2 20 120 138 [mm9:18:32595016-32595034:+] 0.5635 152 7 -23.64 -0.2592 MIMAT0004857 mmu-miR-147 30948 Bin1 auCGUCUUCGUAAAGGC-GUGUg |||||: || ||| |||| guGCAGAGCCA---CCGCCACAc 2 21 287 306 [mm9:18:32595183-32595202:+] 0.5669 120 0 -21.06 -0.1256 MIMAT0004861 mmu-miR-877 30948 Bin1 ggGACGCGGUAGAGGAGAug :||: :: :|||||| cuUUGUUUUUCUUCCUCUcu 3 19 59 78 [mm9:18:32594955-32594974:+] 0.5635 126 0 -15.69 -0.1201 MIMAT0007871 mmu-miR-1892 30948 Bin1 uaggagGGAGGGCAGGGGUUUa |||::| ||||||| gaagaaCCUUUC--CCCCAAAg 2 17 22 41 [mm9:18:32594918-32594937:+] 0.5635 149 7 -18.68 -0.3822 MIMAT0007871 mmu-miR-1892 30948 Bin1 uaggagggagggcaGGGGUUUa ||||||| gccaagagguauacCCCCAAAg 2 9 144 165 [mm9:18:32595040-32595061:+] 0.6801 140 7 -12.34 -0.5686 MIMAT0009424 mmu-miR-1953 30948 Bin1 gucUUCGGAC-UCUU-GAAAGGGu :||: || |||| ||||||| cccGAGUGUGAAGAACCUUUCCCc 2 20 13 36 [mm9:18:32594909-32594932:+] 0.5635 161 7 -19.46 -1.0269 MIMAT0009425 mmu-miR-1954 30948 Bin1 uugucCCAGAGUGAGACGUCa |||: |:|||||||| agccuGGUUCCGCUCUGCAGa 2 17 390 410 [mm9:18:32595286-32595306:+] 0.6024 164 7 -26.50 -0.2914 MIMAT0009425 mmu-miR-1954 30948 Bin1 uuguCCCAGAGUGAGA-CGUCa ||||| : :||| |||| gcuuGGGUCCUCUUCUGGCAGc 2 18 339 360 [mm9:18:32595235-32595256:+] 0.5846 125 0 -19.84 -0.1288 MIMAT0009431 mmu-miR-1958 30948 Bin1 ugaaugacgaagguGAAAGGau |||||| cgagugugaagaacCUUUCCcc 3 9 15 36 [mm9:18:32594911-32594932:+] 0.5635 120 0 -8.52 -0.1063 MIMAT0011212 mmu-miR-2136 30948 Bin1 guguagagucaguuGUGGGUc |||||| aaaccugacaaaacCACCCAg 2 8 476 496 [mm9:18:32595372-32595392:+] 0.6024 120 6 -14.65 -0.1685 MIMAT0011214 mmu-miR-2138 30948 Bin1 uaaggCGGUUCGGG-CAAGG-GAa ||| ||||: ||||| || cacugGCCCAGCCUGGUUCCGCUc 2 18 381 404 [mm9:18:32595277-32595300:+] 0.6024 128 0 -23.07 -0.1023 MIMAT0011222 mmu-miR-2146 30948 Bin1 gugUACCUUGGGAAGAGGUg :|||| |||||||| ucaGUGGA---CUUCUCCAg 2 18 201 217 [mm9:18:32595097-32595113:+] 0.5922 149 7 -18.67 -0.1335 MIMAT0000215 mmu-miR-186 30948 Bin1 ucggguuuuccucuuAAGAAAc |||||| augugugcuuuucuuUUCUUUg 2 8 42 63 [mm9:18:32594938-32594959:+] 0.5635 120 6 -8.01 -0.1171 MIMAT0000677 mmu-miR-7a 30948 Bin1 uguuguuuuagugaucAGAAGGu |||||| uucuuuucuuuguuuuUCUUCCu 2 8 52 74 [mm9:18:32594948-32594970:+] 0.5635 120 6 -8.51 -0.1195 MIMAT0000678 mmu-miR-7b 30948 Bin1 uguuguuuuaguguucAGAAGGu |||||| uucuuuucuuuguuuuUCUUCCu 2 8 52 74 [mm9:18:32594948-32594970:+] 0.5635 120 6 -6.95 -0.1195 MIMAT0003456 mmu-miR-495 30948 Bin1 uucuucacgugguacAAACAAa |||||| ugugcuuuucuuuucUUUGUUu 2 8 45 66 [mm9:18:32594941-32594962:+] 0.5635 120 6 -9.07 -0.1136 MIMAT0003780 mmu-miR-490 30948 Bin1 gucgUACCUCAGGAGGUC-CAAc :|||| |:|||||| ||| uucaGUGGACUUCUCCAGUGUUc 2 19 200 222 [mm9:18:32595096-32595118:+] 0.6019 138 0 -23.19 -0.1042 MIMAT0004936 mmu-miR-873 30948 Bin1 uccUCUGA--GUGUU-CAAGGACg :|||| : ||: ||||||| aguGGACUUCUCCAGUGUUCCUGa 2 19 203 226 [mm9:18:32595099-32595122:+] 0.6019 148 7 -21.50 -0.7680 MIMAT0004937 mmu-miR-875-5p 30948 Bin1 guggacuAUUUUG-ACUCCAUAu |||: | ||||||| ggaaaccUAAGCCAAGAGGUAUa 2 16 134 156 [mm9:18:32595030-32595052:+] 0.6218 146 7 -16.07 -0.7779 MIMAT0005850 mmu-miR-1192 30948 Bin1 uuAAACCAGACAAAC-AAACAAa ||| | | |||| |||||| ucUUUUCUGUUUUUGUUUUGUUu 2 21 76 98 [mm9:18:32594972-32594994:+] 0.5635 132 6 -11.12 -0.9924 MIMAT0005850 mmu-miR-1192 30948 Bin1 uuAAACCAGACAAACAAACAAa ||| ||| ||| |||||| gcUUU--UCU-UUUCUUUGUUu 2 21 48 66 [mm9:18:32594944-32594962:+] 0.5635 131 6 -5.89 -0.1114

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G005601 Bin1 Mus musculus 30948

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Bin1 mmu-miR-20astar beg:438 end:457 pic:3' GAAATTCACGAGCATTACGTCA 5'& ||||.|| ||||||| &5' -----AGTGTTCAAAATGCAG- 3' Bin1 mmu-miR-1892 beg:155 end:165 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& ||||||| &5' --------------CCCCAAA- 3' Bin1 mmu-miR-1892 beg:25 end:41 pic:3' TAGGAGGGAGGGCAGGGGTTTA 5'& ||| | ||||||| &5' ------CCTTTC--CCCCAAA- 3' Bin1 mmu-miR-3099star beg:214 end:232 pic:3' GTTCCCGACCTTCCTTCGACC 5'& |. ||||||| &5' -----GTGTTCCTGAAGCTG- 3' Bin1 mmu-miR-718 beg:122 end:138 pic:3' GCTGTGGGCCGGCCCGCCTTC 5'& |.|| |||||||| &5' ------CTGGG-GGGCGGAA- 3' Bin1 mcmv-miR-M23-2 beg:141 end:163 pic:3' GGCGAACTGG--CTCC----GGGGGTA 5'& .|| |||| |||||| &5' -------GCCAAGAGGTATACCCCCA- 3' Bin1 mcmv-miR-m88-1 beg:192 end:214 pic:3' TCTGGGGCTG--TAGCTGAAGAC 5'& ||||||| .| ||||||| &5' -GACCCCGTTCAGTGGACTTCT- 3' Bin1 mghv-miR-M1-9 beg:9 end:24 pic:3' TTTTTCCAGGTCCGTTTACACT 5'& ||| |.|.||||| &5' -------TCC---CGAGTGTGA 3' Bin1 mmu-miR-15a beg:405 end:427 pic:3' GTGTTTGGTAA-TACACGACGAT 5'& .||.|||| .|||||||.| &5' -GCAGACCAACCGTGTGCTGTT- 3' Bin1 mmu-miR-15b beg:405 end:427 pic:3' ACATTTGGTAC-TACACGACGAT 5'& | |.|||| .|||||||.| &5' -GCAGACCAACCGTGTGCTGTT- 3' Bin1 mmu-miR-16 beg:406 end:427 pic:3' GC-GGTTATAAATGCACGACGAT 5'& | |||| .||||||.| &5' -GACCAACCG---TGTGCTGTT- 3' Bin1 mmu-miR-185 beg:66 end:83 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& || ||| |||.|.| &5' -------CTTCCTCTCTTTTC- 3' Bin1 mmu-miR-185 beg:44 end:60 pic:3' AGTCCTTGACGGAAAGAGAGGT 5'& |||.|||||.|.| &5' --------TGCTTTTCTTTTC- 3' Bin1 mmu-miR-18astar beg:262 end:280 pic:3' GTCTTCCTCGTGAA--TCCCGTCA 5'& |||. |||||.| &5' --------GCATGTTCAGGGCGG- 3' Bin1 mmu-miR-1901 beg:271 end:296 pic:3' CCTGGG-GGCCCTCATG-CTCGCC 5'& ||.| |||||.||.| |||| &5' GGGCGGGCCGGGGGTGCAGAGC-- 3' Bin1 mmu-miR-1906 beg:214 end:236 pic:3' TCGGGACGGAGTCCGACGACGT 5'& ||. .| ||| | |||||||. &5' AGTGTT-CCTGAAGCTGCTGT- 3' Bin1 mmu-miR-1907 beg:404 end:428 pic:3' TGGAGGTCTA---GG-AGACGACGAG 5'& |||| || | |||||.|. &5' -----CAGACCAACCGTGTGCTGTTT 3' Bin1 mmu-miR-1948 beg:297 end:315 pic:3' GACATGCTCACGA----GACGGATTT 5'& || .|||||.| &5' ----------GCCACACTTGCCTGA- 3' Bin1 mmu-miR-195 beg:211 end:235 pic:3' CGGTTATAAAGACA-CGACGAT 5'& |||.|.|| ||| ||||||. &5' -CCAGTGTTCCTGAAGCTGCTG 3' Bin1 mmu-miR-1953 beg:14 end:36 pic:3' GTCTTCGGAC-TCTT-GAAAGGGT 5'& .||. || |||| ||||||| &5' ---GAGTGTGAAGAACCTTTCCC- 3' Bin1 mmu-miR-1954 beg:387 end:410 pic:3' TTGTC---CCAGAGTGAGACGTCA 5'& ||| ||| |.|||||||| &5' --CAGCCTGGTTCCGCTCTGCAG- 3' Bin1 mmu-miR-1956 beg:346 end:371 pic:3' AGGCGACTGAGT-CGGGACCTGA 5'& ||. |||.| |||||||.| &5' TCTTCTGGCAGCTGCCCTGGGC- 3' Bin1 mmu-miR-1958 beg:44 end:61 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& |||||.. ||||.|| &5' ------TGCTTTT-CTTTTCT- 3' Bin1 mmu-miR-1958 beg:66 end:85 pic:3' TGAATGACGAAGGT--GAAAGGAT 5'& ||||| ||||.||. &5' --------CTTCCTCTCTTTTCTG 3' Bin1 mmu-miR-1971 beg:380 end:395 pic:3' AGAGTCGGGTCGGAAATG 5'& || .||||||||| &5' -CT-GGCCCAGCCT---- 3' Bin1 mmu-miR-199a-5p beg:366 end:387 pic:3' CTTGTCCATCAGACTTGTGACCC 5'& |..|||| ||| ||||||| &5' GGGCAGGGC--CTGCACACTGG- 3' Bin1 mmu-miR-199bstar beg:364 end:387 pic:3' CTTGTCCATCAGATTTGTGACCC 5'& |..|||| ||. ||||||| &5' GGGCAGGGC--CTGCACACTGG- 3' Bin1 mmu-miR-200a beg:201 end:222 pic:3' TGTAGCAA-TGGTCT-GTCACAAT 5'& || ||. ||||||| &5' -----GTGGACTTCTCCAGTGTT- 3' Bin1 mmu-miR-2132 beg:296 end:312 pic:3' GTAGCGCAGTTGTGGGCGG 5'& ||| ||||..||| &5' ---CGCC---ACACTTGCC 3' Bin1 mmu-miR-2135 beg:189 end:214 pic:3' CAAAGCCGGGGT------TCTGGAGA 5'& || ||||. .|||.||| &5' ----CGACCCCGTTCAGTGGACTTCT 3' Bin1 mmu-miR-2146 beg:201 end:217 pic:3' GTGTACCTTGGGAAGAGGTG 5'& .|||| |||||||| &5' ---GTGGA---CTTCTCCA- 3' Bin1 mmu-miR-21star beg:405 end:427 pic:3' CTGTCGGGTA-GCTGACGACAAC 5'& .||| ||| || ||||||| &5' -GCAGACCAACCGTGTGCTGTT- 3' Bin1 mmu-miR-22 beg:340 end:362 pic:3' TGTCAAGAAGTTGACCGTCGAA 5'& .| || || ||||||||| &5' --GGGTCCTCTTCTGGCAGCT- 3' Bin1 mmu-miR-22star beg:7 end:29 pic:3' ATTTC-GAACGGTG---ACTTCTTGA 5'& | ||| ||. |||||||| &5' ----GCCTTCCCGAGTGTGAAGAAC- 3' Bin1 mmu-miR-23b beg:9 end:24 pic:3' CCATTAGGGACCGTTACACTA 5'& |||| |.||||| &5' -----TCCCG---AGTGTGA- 3' Bin1 mmu-miR-346 beg:262 end:282 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& ||| |. ||||.|.| &5' ----GCATGTTCA-GGGCGGGC- 3' Bin1 mmu-miR-377 beg:5 end:24 pic:3' TGTTTTCAACGGAAA----CACACTA 5'& ||||| |||||| &5' ---------GCCTTCCCGAGTGTGA- 3' Bin1 mmu-miR-452 beg:390 end:412 pic:3' CAGAGTCAAAG-GAGACGTTTGT 5'& | .||| | |||||||.|| &5' --CCTGGTTCCGCTCTGCAGAC- 3' Bin1 mmu-miR-673-3p beg:353 end:370 pic:3' CCACGTGTCTTGAGTCGGGGCCT 5'& ||| .|| ||||.||. &5' ---GCA----GCT--GCCCTGGG 3' Bin1 mmu-miR-710 beg:327 end:345 pic:3' GAGTTGAGAGGG--GTTCTGAACC 5'& || ||.|.||||| &5' ---------CCGAGCAGGGCTTGG 3' Bin1 mmu-miR-717 beg:414 end:430 pic:3' TCTCTTCCATAGAGACAGACTC 5'& ||.| ||||.||| &5' -------GTGTG-CTGTTTGA- 3' Bin1 mmu-miR-742 beg:156 end:180 pic:3' AAATGGGTCGTA---CCACCGAAAG 5'& |||| |||||.|||| &5' ----CCCAAAGATGAGGTGGTTTTC 3' Bin1 mmu-miR-743a beg:44 end:70 pic:3' AGATGAGTCGAACC---ACAGAAAG 5'& |.||. ||| |||.|||| &5' --TGCTTTTCTTTTCTTTGTTTTTC 3' Bin1 mmu-miR-759 beg:393 end:408 pic:3' CAGTTTTAACAAACGTGAGACG 5'& ||| |.|||||| &5' ---------GTTC-CGCTCTGC 3' Bin1 mmu-miR-762 beg:373 end:395 pic:3' CGAGACAG--GGCCGGGGTCGGGG 5'& || ||| |.|| |||||||. &5' GC-CTGCACACTGG-CCCAGCCT- 3' Bin1 mmu-miR-873 beg:204 end:226 pic:3' TCCTCT-GAGTGTT-CAAGGACG 5'& ||| ||| ||. ||||||| &5' -GGACTTCTC-CAGTGTTCCTG- 3' Bin1 mmu-miR-882 beg:59 end:82 pic:3' TGATTACGC---GATTGAGAGAGGA 5'& ||. || ||||||..| &5' -----TGTTTTTCTTCCTCTCTTTT 3' Bin1 mmu-miR-9 beg:166 end:186 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& || |.| ||||||| &5' ------AGGTGGTTTTCCAAAGA 3' Bin1 mmu-miR-425star beg:0 end:18 pic:3' CCGCCTGTGCTGTAAGGGCTA 5'& |||| . .| ||||||| &5' --CGGAGGA-GCCTTCCCGA- 3' Bin1 mmu-miR-425star beg:247 end:261 pic:3' CCGCCTGTGCTGTAAGGGCTA 5'& || .|||||||| &5' ---------GA-GTTCCCGAT 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 Bin1; Amphl; Sh3p9 mmu-miR-122a 288 310 -UGUUUGUGGUAACAGUGUGAGGU :||:| :||| | ||||||: UGCAGA-GCCACCGCCACACUUG- Bin1; Amphl; Sh3p9 mmu-miR-135a 263 299 AGUGUA--------------UCCUUAUUUUUCGGUAU |:||| :|| |: |:||||| CCGCAUGUUCAGGGCGGGCCGGGGGUGCAGAGCCAC- Bin1; Amphl; Sh3p9 mmu-miR-135b 263 299 -GUGUA--------------UCCUUACUUUUCGGUAU |:||| :|| || |:||||| CCGCAUGUUCAGGGCGGGCCGGGGGUGCAGAGCCAC- Bin1; Amphl; Sh3p9 mmu-miR-140 279 300 GAUGGUAUCCCAU--UUUGGUGAC :||: :||||: :|:|||| -GGCCG-GGGGUGCAGAGCCACC- Bin1; Amphl; Sh3p9 mmu-miR-145 118 138 UUCCCUAAGGACCCUUUUGACCUG |||| ||||| : | ||| -CGGGAAA-CUGGGGGG-C-GGAA Bin1; Amphl; Sh3p9 mmu-miR-150 314 347 -GUG-ACC-AUGU---------UCCC-AACCCUCU |:| ||| |:|: |||| ||||| ACGCUUGGCUGCGCCACCGAGCAGGGCUUGGGU-- Bin1; Amphl; Sh3p9 mmu-miR-15a 405 428 GUGUUUGGUAA-UACACGACGAU :||:|||| :|||||||:| UGCAGACCAACCGUGUGCUGUUU Bin1; Amphl; Sh3p9 mmu-miR-15b 404 428 -ACAUUUGGUAC-UACACGACGAU || |:|||| :|||||||:| CUGCAGACCAACCGUGUGCUGUUU Bin1; Amphl; Sh3p9 mmu-miR-195 213 236 CGGUUAUAAAGACA-CGACGAU- |||:|:|| ||| ||||||: UCCAGUGUUCCUGAAGCUGCUGU Bin1; Amphl; Sh3p9 mmu-miR-199a 366 388 -CUUGUCCAUCAGACUUGUGACCC |::|||| ||| ||||||| UGGGCAGGGC--CUGCACACUGGC Bin1; Amphl; Sh3p9 mmu-miR-199a* 213 238 UUGGUUACACG----UCUGAUGACAU- |||:||| || ||:||||: -UCCAGUGUUCCUGAAG-CUGCUGUGU Bin1; Amphl; Sh3p9 mmu-miR-199b 366 388 -CUUGUCCAUCAGAUUUGUGACCC |::|||| ||: ||||||| UGGGCAGGGC--CUGCACACUGGC Bin1; Amphl; Sh3p9 mmu-miR-214 359 381 -GAC-GGACAGACA-CGGACGACA ||| |||| |||||| GCUGCCCUGGGCAGGGCCUGCA-- Bin1; Amphl; Sh3p9 mmu-miR-217 212 238 UAGGUCAGUCAAGGACU---ACGUCAU- |||||| |||||||| ||| ||: CUCCAGU--GUUCCUGAAGCUGCUGUGU Bin1; Amphl; Sh3p9 mmu-miR-22 333 363 -UGUCAAGA-------AGUUGACCGUCGAA :||| || || ||||||||| AGCAGGGCUUGGGUCCUCUUCUGGCAGCUG Bin1; Amphl; Sh3p9 mmu-miR-23a 4 25 -CCUUU--AGGGACCGUUACACUA |||: |||| |:||||| AGGAGCCUUCCCG---AGUGUGAA Bin1; Amphl; Sh3p9 mmu-miR-24 217 240 GACAAGGACGACU-UGACUCGGU |||||||| :||| |:| GUGUUCCUGAAGCUGCUGUGUCC Bin1; Amphl; Sh3p9 mmu-miR-25 276 294 AGUCUGGCUCUGUUCACGUUAC |:|:|||:| :|||||: GCGGGCCGGG---GGUGCAGA- Bin1; Amphl; Sh3p9 mmu-miR-27a 203 238 -CGCCUUGAA---------------UCGGUGACACUU |:|| |||| |||::||||| AGUGG-ACUUCUCCAGUGUUCCUGAAGCUGCUGUGU- Bin1; Amphl; Sh3p9 mmu-miR-290 233 254 UUUUUCACGGGGGU--AUCAAACUC- |||:|||| ||| ||||| ----UGUGUCCCCCCCUAG-UUGAGU Bin1; Amphl; Sh3p9 mmu-miR-292-3p 302 329 -UGUGAG----UUUUGGACCGCCGUGAA |||||: :| :|:|||| ||:| CACACUUGCCUGACGCUUGGCUGCGCC- Bin1; Amphl; Sh3p9 mmu-miR-292-5p 1 25 GUUUUCUCGG--GGG-UCAAACUCA |::|:||||| ||| ||| ||| CGGAGGAGCCUUCCCGAGUGUGAA- Bin1; Amphl; Sh3p9 mmu-miR-293 302 332 -UGUG-AUGU-UUGA-----GACGCCGUGA |||| |:| :|| ||||| ||| CACACUUGCCUGACGCUUGGCUGCGCCACC Bin1; Amphl; Sh3p9 mmu-miR-296 117 143 UGUCCUA--ACUCCCCCCCG--GGA- |:||| ||:|||| || ||| UCGGGAAACUGGGGGGCGGAAACCUA Bin1; Amphl; Sh3p9 mmu-miR-298 331 359 CCU--UCUUG---UCGGGAGGAGACGG- || ||::| :|:||||:|||| | CGAGCAGGGCUUGGGUCCUCUUCUGGCA Bin1; Amphl; Sh3p9 mmu-miR-299 113 149 -UACAUACA-------CCCUGCC-----AUUUGGU- :||| | |||:||| |||:||| AGUGUCGGGAAACUGGGGGGCGGAAACCUAAGCCAA Bin1; Amphl; Sh3p9 mmu-miR-300 331 360 CUUC-UCUCGAA--CGGGAA-----CGUAU :|| ||:||| |:||| ||| CGAGCAGGGCUUGGGUCCUCUUCUGGCAG- Bin1; Amphl; Sh3p9 mmu-miR-320 360 394 AAGCGGGAGA-GU--------------UGGGUCGAAAA :||||| || :|||||| -CUGCCCUGGGCAGGGCCUGCACACUGGCCCAGCC--- Bin1; Amphl; Sh3p9 mmu-miR-324-3p 352 376 -GGUCGUCGU--GGACCCCGUCACC- |::||||| ||| |||||| || UCUGGCAGCUGCCCU-GGGCAG-GGC Bin1; Amphl; Sh3p9 mmu-miR-324-5p 255 292 GUGGUUACGGGA--------------U--CCCCUACGC ||:|||||| : ||||:||| -CCCGAUGCCCGCAUGUUCAGGGCGGGCCGGGGGUGCA Bin1; Amphl; Sh3p9 mmu-miR-326 123 154 -UGACCUCCUUCC--------CGGGUCUCC- |||||:|| || ||| ||||| AACUGGGGGGCGGAAACCUAAGCCAAGAGGU Bin1; Amphl; Sh3p9 mmu-miR-328 275 305 -UGCCU--UCCCGUC-UCUCC----CGGUC :|||: :||| | |||| |||| GGCGGGCCGGGGGUGCAGAGCCACCGCCAC Bin1; Amphl; Sh3p9 mmu-miR-329 272 291 UUUUUCCAAUCGACCCACACAA |:|| :|| ||| ||| --CAGGGCGGGCCGGGGGUGC- Bin1; Amphl; Sh3p9 mmu-miR-330 401 430 AGAGACGUCC----GGGACACGA--AACG |||||||| || |||||| ||| GCUCUGCAGACCAACCGUGUGCUGUUUGA Bin1; Amphl; Sh3p9 mmu-miR-331 269 292 -AAGAUCCUAUCCGGGUCCC-CG- ||| |||: :|||| :||| || GUUC-AGGGCGGGCCGGGGGUGCA Bin1; Amphl; Sh3p9 mmu-miR-340 114 138 CCGAUAUUUCAUUGACUC--UGCCU- |:| :| |||||:| :|||| --GUGUCGGGAAACUGGGGGGCGGAA Bin1; Amphl; Sh3p9 mmu-miR-341 405 431 -UGACUGGCUGGCUGGCU---AGCU- :| |||| |||| :| |:|| UGCAGACCAACCGUGUGCUGUUUGAA Bin1; Amphl; Sh3p9 mmu-miR-345 264 294 -CGUGA----CCUGA----UCCCCA-GUCGU |||: ||:| :||||| ||| CGCAUGUUCAGGGCGGGCCGGGGGUGCAGA- Bin1; Amphl; Sh3p9 mmu-miR-346 273 295 UCUCCGUCCGUGAG-CC-CGUCUGU :|||:||| | || ||||| -AGGGCGGGC-CGGGGGUGCAGAG- Bin1; Amphl; Sh3p9 mmu-miR-34a 354 384 -UUGUUGG------UCGAUUCUGUGACG-GU- ::||:|: :|| |:|:| |||| || UGGCAGCUGCCCUGGGC-AGGGC-CUGCACAC Bin1; Amphl; Sh3p9 mmu-miR-34c 288 314 -CGUUAGUCGAU--UGAUGUGA-CGGA- |||: ||| :| ||||| |||| UGCAG--AGCCACCGCCACACUUGCCUG Bin1; Amphl; Sh3p9 mmu-miR-351 336 358 GUCCGAGUUUCCCG--AGGAGUCCCU :||||: |||: ||:|| || AGGGCUU---GGGUCCUCUUCUGGC- Bin1; Amphl; Sh3p9 mmu-miR-370 389 411 -UUGGUCCAAGGUGGGGUCGUCCG |:|| ||||||:|:|: |||| CAGCCUGGUUCCGCUCU-GCAGA- Bin1; Amphl; Sh3p9 mmu-miR-377 1 25 UGUUUUCAACGGAAA----CACACUA ::|| ||||| |||||| --CGGAGGAGCCUUCCCGAGUGUGAA Bin1; Amphl; Sh3p9 mmu-miR-378 333 361 UGUGUCCUGGACCUCAGU------CC-UC- :||||:|:||| ||| || || -AGCAGGGCUUGG-GUCCUCUUCUGGCAGC Bin1; Amphl; Sh3p9 mmu-miR-412 274 294 UGCCGAUCACCUGG--UCCACUUCA ||| ||:|| :|||| || -GGGC----GGGCCGGGGGUGCAGA Bin1; Amphl; Sh3p9 mmu-miR-423 273 297 GACUC-CCCGGAG-UCUGG-CUCGA |:| ||||| :| | |||| -AGGGCGGGCCGGGGGUGCAGAGCC Bin1; Amphl; Sh3p9 mmu-miR-424 212 236 -AGGUUUU--GUACUUAACGACGAC- ||||: | |||| ||||||| CUCCAGUGUUCCUGAA--GCUGCUGU Bin1; Amphl; Sh3p9 mmu-miR-425 203 228 CCGCCUGUG-----CUGUAAGGGCUA |:|||| | ::||||:|| AGUGGACUUCUCCAG-UGUUCCUGAA Bin1; Amphl; Sh3p9 mmu-miR-431 359 389 GGACGUA--CUG--CCGGACGUU---CUGU |||| |:| |||||||| |:| GCUGCCCUGGGCAGGGCCUGCACACUGGCC Bin1; Amphl; Sh3p9 mmu-miR-449b 276 298 -GGUCGAUCGUUACGUGACGGA | :|| :| ::|||| ||| GCGGGCCGGGGGUGCAGAGCCA Bin1; Amphl; Sh3p9 mmu-miR-452 388 413 CAGAGUCA----AAGG--AGACGUUUGU ||| |||| ||||||:|| ---CCAGCCUGGUUCCGCUCUGCAGACC Bin1; Amphl; Sh3p9 mmu-miR-455-3p 360 382 UCACAUAUACGGGCACCUG------ACGUA ||||| |||:| |||| -------CUGCCC-UGGGCAGGGCCUGCAC Bin1; Amphl; Sh3p9 mmu-miR-465-3p 338 372 AGAUGAAUCU-------------UUCCGGGACUAG- :|||:|: : |||||| | --GGCUUGGGUCCUCUUCUGGCAGCUGCCCUGGGCA Bin1; Amphl; Sh3p9 mmu-miR-469 133 174 -CCUG------UGGUUCUA---------GUUACUUUCUCCGU ||| :|||||| ||| || ||||: CGGAAACCUAAGCCAAGAGGUAUACCCCCAAAGAU-GAGGUG Bin1; Amphl; Sh3p9 mmu-miR-483 271 296 UGUUCUGCCC--UCCCCUC--CUCACU ||:|:|||| :|||| ||| UCAGGGCGGGCCGGGGGUGCAGAGC-- Bin1; Amphl; Sh3p9 mmu-miR-484 276 298 UAGCCC--UCCCC-UGACUCGGACU |||| :|||| :| ||||| -GCGGGCCGGGGGUGCAGAGCCA-- Bin1; Amphl; Sh3p9 mmu-miR-485-3p 1 25 CUCUCCUCUC---GGCACAUACUGA :|||||| ||| ||:||| CGGAGGAGCCUUCCCGAGUGUGAA- Bin1; Amphl; Sh3p9 mmu-miR-486 339 376 -GAGCC----------CCGUCGAGUCA---UGUCCU- ||:|| ||||||| :||||: GCUUGGGUCCUCUUCUGGCAGCUGCCCUGGGCAGGGC Bin1; Amphl; Sh3p9 mmu-miR-497 404 428 -AUGUUUGGUGU-CACACGACGAC |:||:|||| ||||||||:| CUGCAGACCAACCGUGUGCUGUUU Bin1; Amphl; Sh3p9 mmu-miR-500 341 373 GACUUGGGA-----------ACGGGUCCACGUA || :||| ||||| || ||| UUGGGUCCUCUUCUGGCAGCUGCCCUGG-GCAG Bin1; Amphl; Sh3p9 mmu-miR-503 201 236 CGUCA----------UGACAAGGG---CGACGAU- |||| | ||||||: ||||||: UCAGUGGACUUCUCCAGUGUUCCUGAAGCUGCUGU Bin1; Amphl; Sh3p9 mmu-miR-540 363 390 -GGUCCUAG-CUGGA-----GACUGGA || ||: |:||| |||:|| CCCUGGGCAGGGCCUGCACACUGGCCC Bin1; Amphl; Sh3p9 mmu-miR-546 312 334 -CUGA-----GGCACGGUGGUA ||| |:| ||||||: UGACGCUUGGCUGCGCCACCGA Bin1; Amphl; Sh3p9 mmu-miR-551b 320 349 GUGACUU--UGGUUCAU-----ACCCAGC :||| |||:|| |||||| GGCUGCGCCACCGAGCAGGGCUUGGGUCC Bin1; Amphl; Sh3p9 mmu-miR-615 118 138 UUCUCCCUCUGGGUCCGAGCCU- |||| ||: :|| |||| ---CGGGAAACUGGGGGGCGGAA Bin1; Amphl; Sh3p9 mmu-miR-666 343 381 -CCG-----AGAGUGUCGACA----------CGGGCGA ||: ||| :|||||| |||:|| GGGUCCUCUUCUGGCAGCUGCCCUGGGCAGGGCCUGCA Bin1; Amphl; Sh3p9 mmu-miR-670 262 278 AAGUGGUGUAUGUGAGUCCCUA ||:|||: :|||||| ---CCCGCAUG--UUCAGGGC- Bin1; Amphl; Sh3p9 mmu-miR-674 185 208 AUGU--GGUGAGGGUAGAGUCACG :| ||: ||| :|||||| AGCCGUCCGA-CCCCGUUCAGUGG Bin1; Amphl; Sh3p9 mmu-miR-675-5p 381 415 -UGACACC--CGGGA-AAGGCG-------UGGU- |||| |||: |||||| |||| CACUGGCCCAGCCUGGUUCCGCUCUGCAGACCAA Bin1; Amphl; Sh3p9 mmu-miR-676 260 281 UCGAGUUGUUGGAGUCCUGCC- || | :|| :|||||:||| UGC-CCGCAUGUUCAGGGCGGG Bin1; Amphl; Sh3p9 mmu-miR-676* 275 296 -CGUUCAGGAUUCCAACAUCUCA ||::| || ::||| |||| GGCGGG-CCGGGGGUGC-AGAGC Bin1; Amphl; Sh3p9 mmu-miR-680 240 266 -GGGGGUACAG-UCGU---CUACGGG- ||||:| ||: ||: ||||||| CCCCCUA-GUUGAGUUCCCGAUGCCCG Bin1; Amphl; Sh3p9 mmu-miR-681 319 343 -UCGACGGACGG----UCGCUCCGAC :||||| ||| ||| :|||| UGGCUGC--GCCACCGAGCAGGGCUU Bin1; Amphl; Sh3p9 mmu-miR-683 335 375 CUCCUG---------------UGUCGAAUG---UCGUCC- |||:| :||||| :||||| CAGGGCUUGGGUCCUCUUCUGGCAGCUGCCCUGGGCAGGG Bin1; Amphl; Sh3p9 mmu-miR-689 257 285 CCUG-GGGCGG------CUCGCCCCUGC- ||: ||||| |:||||| || CGAUGCCCGCAUGUUCAGGGCGGGC-CGG Bin1; Amphl; Sh3p9 mmu-miR-692 163 188 CUC-ACUCCGCGA----GUUUCUCUA || |||||:| | ||||||| AAGAUGAGGUGGUUUUCCAAAGAGC- Bin1; Amphl; Sh3p9 mmu-miR-695 369 396 AAGUCA-----GUG-GAUACGGGUUAGA- ||| ||| ||: |||||: || -GCAGGGCCUGCACACUG-GCCCAGCCUG Bin1; Amphl; Sh3p9 mmu-miR-696 362 389 -GGGUGUCGUUC-------GUGUGCG- ||| :|||:| ||| || GCCCUGGGCAGGGCCUGCACACUGGCC Bin1; Amphl; Sh3p9 mmu-miR-699 276 298 -GCUCGGUCCA-GCGUGACGGA ||:|||:|| :||| ||| GCGGGCCGGGGGUGCAGAGCCA Bin1; Amphl; Sh3p9 mmu-miR-7 162 183 GUUGUUUUAG-UGAUCAGAAGGU- ||:|| : |:||:||||| ---AAAGAUGAGGUGGUUUUCCAA Bin1; Amphl; Sh3p9 mmu-miR-700 203 238 CCACCUGAG-----C-CAAGGGC-------GCAC- |||||||: | |||||:| :||| AGUGGACUUCUCCAGUGUUCCUGAAGCUGCUGUGU Bin1; Amphl; Sh3p9 mmu-miR-702 273 297 -CUCGCCCCAUUUCCCACC---CGU |:||||| ::||||| || AGGGCGGGCC-GGGGGUGCAGAGCC Bin1; Amphl; Sh3p9 mmu-miR-709 345 368 -AGGAGGA---CGGAGACGGAGG- |||||: || ||||| |: GUCCUCUUCUGGCAGCUGCC-CUG Bin1; Amphl; Sh3p9 mmu-miR-710 316 346 -GAGUUGAGA-GG-GGU----UCUGAACC- ||:::|| || ||: :|:||||| GCUUGGCUGCGCCACCGAGCAGGGCUUGGG Bin1; Amphl; Sh3p9 mmu-miR-711 339 379 -GAAUGUA-GAGA-----------GGGGCCCA----GGG- |||: :| |||| |||:||| ||: GCUUGGGUCCUCUUCUGGCAGCUGCCCUGGGCAGGGCCUG Bin1; Amphl; Sh3p9 mmu-miR-712* 274 312 GUUG-UGGGCCCCCAC---------------UGAGCGU ::| : ||||||||| |||:|| GGGCGGGCCGGGGGUGCAGAGCCACCGCCACACUUGCC Bin1; Amphl; Sh3p9 mmu-miR-714 323 355 -CGC--UGGCUGG--------CCGGGAGCAGC ||| ||||| | ||:|||| || UGCGCCACCGAGCAGGGCUUGGGUCCUCUUCU Bin1; Amphl; Sh3p9 mmu-miR-718 256 289 -GCUGUGGG---------CCGGCCC-GCCUUC- |||::||| || |||| ||| | CCGAUGCCCGCAUGUUCAGGGCGGGCCGGGGGU Bin1; Amphl; Sh3p9 mmu-miR-719 264 288 UUGUAAAAAGA-CA--UCGGCUCUA :||| ||| | :||||:|: CGCAUG-UUCAGGGCGGGCCGGGGG Bin1; Amphl; Sh3p9 mmu-miR-742 154 181 AAAUGGG----UCGUA-CCACCGAAAG- ||||| || |||||:|||| -AUACCCCCAAAGAUGAGGUGGUUUUCC Bin1; Amphl; Sh3p9 mmu-miR-744 230 269 -CGACAAUC---GGGAUCG-------------GGGCGU- ||||| ||||||: |||||| UGCUGUGUCCCCCCCUAGUUGAGUUCCCGAUGCCCGCAU Bin1; Amphl; Sh3p9 mmu-miR-759 388 409 CAGUUUUAACAAACGUGAGACG- ||: ||| |:|||||| -CCAGCCUGGUUC-CGCUCUGCA Bin1; Amphl; Sh3p9 mmu-miR-761 203 234 ACACA-------GUCAAAGUGGGA--CGACG- ||| |||| ||: ||||| AGUGGACUUCUCCAGUGUU-CCUGAAGCUGCU Bin1; Amphl; Sh3p9 mmu-miR-762 230 259 -CGAGACAGGGCCGGGGUCG------GGG- ||| |||||| |||:||: ||| UGCUGUGUCCCC-CCCUAGUUGAGUUCCCG Bin1; Amphl; Sh3p9 mmu-miR-763 377 398 -CG-GUGACCAAGAAGGGUC-GACC- || |||||| ||||| |||| UGCACACUGG-----CCCAGCCUGGU Bin1; Amphl; Sh3p9 mmu-miR-764-3p 355 381 -UGUCAACGGUGAUA----CCGGAGGA :||| |||| ||: ||||| | GGCAGCUGCC-CUGGGCAGGGCCUGCA Bin1; Amphl; Sh3p9 mmu-miR-770-3p 356 381 GGUCGA--GGUGCAG-UCCGGGUGC ||||| || | :||||::| GCAGCUGCCCUGGGCAGGGCCUGCA Bin1; Amphl; Sh3p9 mmu-miR-92 276 294 -GUCCGGCCCUGUUCACGUUAU |:||||||| :|||||: GCGGGCCGGG---GGUGCAGA- Bin1; Amphl; Sh3p9 mmu-miR-199a 380 387 ----------------------CUUGUCCAUCAGACUUGUGACCC |::|||| ||| ||||||| GUCCUCUUCUGGCAGCUGCCCUGGGCAGGGC--CUGCACACUGGC Bin1; Amphl; Sh3p9 mmu-miR-199b 380 387 ----------------------CUUGUCCAUCAGAUUUGUGACCC |::|||| ||: ||||||| GUCCUCUUCUGGCAGCUGCCCUGGGCAGGGC--CUGCACACUGGC Bin1; Amphl; Sh3p9 mmu-miR-22 355 362 --------------UGUCAAGAAGUU-------GACCGUCGAA :||| ||| :: ||||||||| GGCUGCGCCACCGAGCAGGGCUUGGGUCCUCUUCUGGCAGCUG Bin1; Amphl; Sh3p9 mmu-miR-423 329 336 -----------------GACUCC---CCGGAGUC-UGGCUCGA |||| | |||: ||||||| GCCACCGCCACACUUGCCUGACGCUUGGCUGCGCCACCGAGCA Bin1; Amphl; Sh3p9 mmu-miR-425 253 260 CCGCCUGU-----------------------GCUGUAAGGGCUA :|| :|||||||| UGUUCCUGAAGCUGCUGUGUCCCCCCCUAGUUGA-GUUCCCGAUG Bin1; Amphl; Sh3p9 mmu-miR-666 260 267 CCGAGAGUGUCGAC-------------------------ACGGGCGA :| |||| ||||||| GAA----GCUGCUGUGUCCCCCCCUAGUUGAGUUCCCGAUGCCCGCA Bin1; Amphl; Sh3p9 mmu-miR-718 131 138 ----------------------GCUG--UGGGCCGGCCCGCCUUC ||: ||: || |||||||| UUUUGAAAUUCUUGAAAAGUGUCGGGAAACUGGG--GGGCGGAAA Bin1; Amphl; Sh3p9 mmu-miR-122a 289 312 uGUUUGUGGUAACAGUGUGA--GGu ||:| :||| | |||||| || gCAGA-GCCACCGCCACACTTGCCt Bin1; Amphl; Sh3p9 mmu-miR-135a 277 299 aguguauCCUUAUUUUUCGGUau ||::|: |:||||| cgggccgGGGGTGCAGAGCCAcc Bin1; Amphl; Sh3p9 mmu-miR-135b 278 299 guguauCCUUACUUUUCGGUau ||::|| |:||||| gggccgGGGGTGCAGAGCCAcc Bin1; Amphl; Sh3p9 mmu-miR-140 278 300 gauGGUAUCC-CAUUUUGGUGac ||: :|| | |:|:|||| gggCCGGGGGTGCAGAGCCACcg Bin1; Amphl; Sh3p9 mmu-miR-145 112 130 UUCCCUAAGGACCCUUUUGACCug ||| | || ||:||||||| AAGTG--TC---GGGAAACTGGgg Bin1; Amphl; Sh3p9 mmu-miR-150 328 348 GUGACCAUGUUCCCAACCCucu ||| | :||:|| ||||| CAC-CGAGCAGGGCTTGGGtcc Bin1; Amphl; Sh3p9 mmu-miR-15b 405 427 ACAUUUGG-UACUACACGACGAu || |:||| | :|||||||:| TGCAGACCAACCGTGTGCTGTTt Bin1; Amphl; Sh3p9 mmu-miR-199a 367 387 CUUGUCCAUCAGACUUGUGACCc |::|||| | ||| ||||||| GGGCAGG--GCCTGCACACTGGc Bin1; Amphl; Sh3p9 mmu-miR-199a* 212 236 uuGGUUACACG---UCUGAUGACAu |||:||| | | :||:|||| ctCCAGTGTTCCTGAAGCTGCTGTg Bin1; Amphl; Sh3p9 mmu-miR-199b 367 387 CUUGUCCAUCAGAUUUGUGACCc |::|||| | ||: ||||||| GGGCAGG--GCCTGCACACTGGc Bin1; Amphl; Sh3p9 mmu-miR-214 360 382 GAC-GGA-CAGACACGGACGaca ||| ||| | | | |||||| CTGCCCTGGGCAGGGCCTGCaca Bin1; Amphl; Sh3p9 mmu-miR-22 341 362 uguCAAGAAGUUGACCGUCGAa | || || ||||||||| ttgGGTCCTCTTCTGGCAGCTg Bin1; Amphl; Sh3p9 mmu-miR-23a 2 24 CCU-UUAGGGACCG-UUACACUa ||| :| ||:| | |:||||| GGAGGAGCCTTCCCGAGTGTGAa Bin1; Amphl; Sh3p9 mmu-miR-25 271 294 AGUCUGGCUCUG--UUCACGUuac ||||: ||:| | ::||||| TCAGGGCGGGCCGGGGGTGCAgag Bin1; Amphl; Sh3p9 mmu-miR-27a 217 238 CGCCUUGA-AUCGGUGACACuu |:| || |||::||||| GTGTTCCTGAAGCTGCTGTGtc Bin1; Amphl; Sh3p9 mmu-miR-28 200 234 gAGUUAUCUGA------CAC-------UCGAGGAa |||:|:|||| ||| |||| || tTCAGTGGACTTCTCCAGTGTTCCTGAAGCTGCTg Bin1; Amphl; Sh3p9 mmu-miR-290 231 252 uuuuuCACGGGGGUAUCAAACUC || ||||| ||| ||||| gctgtGTCCCCCCCTAG-TTGAG Bin1; Amphl; Sh3p9 mmu-miR-292-3p 303 332 UGUGA----GUUUUGGAC---CGCCGUGaa ||||| ::| :|:|| ||| ||| ACACTTGCCTGACGCTTGGCTGCGCCACcg Bin1; Amphl; Sh3p9 mmu-miR-292-5p 1 25 GUUUUCUCGG--GGG-UCAAACUca |::|:||||| ||| ||| ||| CGGAGGAGCCTTCCCGAGTGTGAag Bin1; Amphl; Sh3p9 mmu-miR-293 303 331 UGUG-AUG---UUUGA---GACGCCGUGa |||| |:| | :|| ||||| ||| ACACTTGCCTGACGCTTGGCTGCGCCACc Bin1; Amphl; Sh3p9 mmu-miR-296 111 136 UGUCCUAACUC-----CCCCCCGgga | || :| |:| ||||||| AAAGTGTCGGGAAACTGGGGGGCgga Bin1; Amphl; Sh3p9 mmu-miR-298 333 357 cCUUCUUG---UCGGGAGGAGACgg | ||::| :|:||||:|||| aGCAGGGCTTGGGTCCTCTTCTGgc Bin1; Amphl; Sh3p9 mmu-miR-299 121 141 uacauACACCCUGCCAUUUGGu || |||:| | ||||| gaaacTGGGGGGC-GGAAACCt Bin1; Amphl; Sh3p9 mmu-miR-300 332 360 CUUCUCUCGAAC---GG----GAACGUau ||: ||:||||| || || ||| GAGCAGGGCTTGGGTCCTCTTCTGGCAgc Bin1; Amphl; Sh3p9 mmu-miR-320 342 364 aagCGGGAGAGUUGGGUCGAaaa |:|||||: ||||| tggGTCCTCTTCTGGCAGCTgcc Bin1; Amphl; Sh3p9 mmu-miR-324-3p 353 375 GGUCGUCG-UGGACCCCGUCACc |::||||| :|| |||||| | CTGGCAGCTGCCCTGGGCAGGGc Bin1; Amphl; Sh3p9 mmu-miR-324-5p 269 291 gugGUUACG---GGAUCCCCUACGc ||: || || ||||:||| gttCAGGGCGGGCC--GGGGGTGCa Bin1; Amphl; Sh3p9 mmu-miR-326 124 152 UGACCUCCUUCC--------CGGGUCUCC |||||:||: || ||| ||||| ACTGGGGGGCGGAAACCTAAGCCAAGAGG Bin1; Amphl; Sh3p9 mmu-miR-328 263 284 uGCCUUCCCGUCUCUCCCGGUC || | | |||:| |||||:| cCGCATGTTCAGGGCGGGCCGG Bin1; Amphl; Sh3p9 mmu-miR-329 270 291 uuuUUCCAAUCGACCCACACaa |:|| :|| ||| ||| ttcAGGGCGGGCCGGGGGTGca Bin1; Amphl; Sh3p9 mmu-miR-331 270 288 AAGAUCCUAUCCGGGUCCCCg ||| |||: :|| ||:|||| TTC-AGGGCGGG-CCGGGGGt Bin1; Amphl; Sh3p9 mmu-miR-340 112 136 ccgAUAUUUCAUUGA--CUCUGCCU |:| ::| |||| |:|:|||| aagTGTCGGGAAACTGGGGGGCGGA Bin1; Amphl; Sh3p9 mmu-miR-341 382 406 UGACUGG--CUGGCU--GGCUAGcu ||||:|| | |:|: ||| || ACTGGCCCAGCCTGGTTCCGCTCtg Bin1; Amphl; Sh3p9 mmu-miR-345 274 294 CGUGACCUGAUCCCCA-GUCgu | :| ||:| :||||| ||| GGGC-GGGCCGGGGGTGCAGag Bin1; Amphl; Sh3p9 mmu-miR-346 257 282 uCUCCGUCCGU--GAG-CCCGUCUGu || || ||| :|| ||||:|:| cGATGCCCGCATGTTCAGGGCGGGCc Bin1; Amphl; Sh3p9 mmu-miR-34a 370 389 uUGUUGGUCGAUUCUGUGA-CGGu | ::|| || ||||| ||| cAGGGCCTGC----ACACTGGCCc Bin1; Amphl; Sh3p9 mmu-miR-34a 342 365 uuguuGGUCGAUUCUGU-GACGGu || :| |:|| ||||| tgggtCCTCTTCTGGCAGCTGCCc Bin1; Amphl; Sh3p9 mmu-miR-34c 289 312 CGUUAGUCGAU--UGAUGUG-ACGGA |||: ||| | :| |||| ||||| GCAG--AGCCACCGCCACACTTGCCT Bin1; Amphl; Sh3p9 mmu-miR-351 353 375 GUCCGAGUUUCCCGAGGA---GUCCCu | ||| |: || ||| ||||| CTGGC---AGCTGC-CCTGGGCAGGGc Bin1; Amphl; Sh3p9 mmu-miR-370 390 411 UUGGUCCAAGGUGGGGUCGUCcg |:|| ||||||: |:| |||| AGCCTGGTTCCG-CTCTGCAGac Bin1; Amphl; Sh3p9 mmu-miR-378 354 375 uguGUC--CUGGACCUCAGUCCuc ||| | |||| | |||| tggCAGCTGCCCTG--GGCAGGgc Bin1; Amphl; Sh3p9 mmu-miR-412 273 293 UGCCGAUCACCUGG--UCCACUUCa | ||| ||:|| :|||| || AGGGC----GGGCCGGGGGTGCAGa Bin1; Amphl; Sh3p9 mmu-miR-423 311 336 GACUCC---CCGGAGU-CUGGCUCGa |||| | |||: |: ||||||| CTGACGCTTGGCTGCGCCACCGAGCa Bin1; Amphl; Sh3p9 mmu-miR-423 272 296 GACUC-CCCGGAGUC--UGGCUCGa | |:| ||||| :| :| |||| CAGGGCGGGCCGGGGGTGCAGAGCc Bin1; Amphl; Sh3p9 mmu-miR-424 213 234 AGGUUUU--GUACUUAACGACGAC ||||: : | |||| ||||||| TCCAGTGTTCCTGAA--GCTGCTG Bin1; Amphl; Sh3p9 mmu-miR-425 241 260 ccgccugugCUGUAAGGGCUA || :|||||||| cccctagttGA-GTTCCCGAT Bin1; Amphl; Sh3p9 mmu-miR-431 353 376 GGACGUACUGCCGGA--CGUUCUGu |: ||| | :| ||| |||:|:| CTGGCA-GCTGCCCTGGGCAGGGCc Bin1; Amphl; Sh3p9 mmu-miR-431 388 412 GGACGUACU---GCCGGACGUUCUGu || || ||: || :|||| |||| CCAGCCTGGTTCCGCTCTGC-AGACc Bin1; Amphl; Sh3p9 mmu-miR-449b 281 303 GGUCGAU-CGUUAC-GUGACGGa ||:| : |||: | ||| ||| CCGGGGGTGCAGAGCCACCGCCa Bin1; Amphl; Sh3p9 mmu-miR-452 391 412 CAGAGUCAAAG-GAGACGUUUGu | || :||| | |||||||:|| GCCT-GGTTCCGCTCTGCAGACc Bin1; Amphl; Sh3p9 mmu-miR-455-3p 353 381 ucaCAUAUACGGG---C--ACCUGACGUa | | ||||| | || ||||| ctgGCAGCTGCCCTGGGCAGGGCCTGCAc Bin1; Amphl; Sh3p9 mmu-miR-465-3p 349 370 AGAUGAAUCUUUC--CGGGACuag ||| || |: || |||||| TCTTCT--GGCAGCTGCCCTGggc Bin1; Amphl; Sh3p9 mmu-miR-469 134 154 CCUGUGG-UUCUAGUUACUUUCUCCGU ||| ||| ||| | ||||||:| GGAAACCTAAG--C----CAAGAGGTA Bin1; Amphl; Sh3p9 mmu-miR-469 151 189 CC-UGUGG----UUCUAGU-UAC-------UUUCUCCGu || |:||| ||||| | :|| |||||| | GGTATACCCCCAAAGATGAGGTGGTTTTCCAAAGAGCCg Bin1; Amphl; Sh3p9 mmu-miR-484 275 299 uaGCCC--UCCCC-UGACUCGGacu |||| :|||| :| ||||| ggCGGGCCGGGGGTGCAGAGCCacc Bin1; Amphl; Sh3p9 mmu-miR-485-3p 1 25 cuCUCCUC---UCGGCACAUACUga |||||| ||| ||:||| cgGAGGAGCCTTCCCGAGTGTGAag Bin1; Amphl; Sh3p9 mmu-miR-486 350 374 GAGCCCCGUCGA---GUCAUGUCCu ||: ||||||| | | :|||| CTTCTGGCAGCTGCCCTGGGCAGGg Bin1; Amphl; Sh3p9 mmu-miR-497 405 427 AUGUUUGG-UGUCACACGACGAc |:||:||| || ||||||||:| TGCAGACCAACCGTGTGCTGTTt Bin1; Amphl; Sh3p9 mmu-miR-500 360 381 GACUUGGGAACGGGUCC---ACGUa ||| ||| || |||| |||| CTG--CCC-TGGGCAGGGCCTGCAc Bin1; Amphl; Sh3p9 mmu-miR-503 214 234 cGUCAUGACAAGG---GCGACGAu ||| |||||| |||||| cCAG---TGTTCCTGAAGCTGCTg Bin1; Amphl; Sh3p9 mmu-miR-540 369 389 gGUCCUAGCUG-GAGACUGGa ||||: | :| | |||:|| gCAGGGCCTGCACACTGGCCc Bin1; Amphl; Sh3p9 mmu-miR-546 318 333 cugaGGCACGGUGGua |:| |||||| ttggCTGCGCCACCga Bin1; Amphl; Sh3p9 mmu-miR-551b 328 348 GUGACUUUGGUUCAUACCCAGc ||| | |:| ::| |||||| CACCG-AGCAGGGCTTGGGTCc Bin1; Amphl; Sh3p9 mmu-miR-615 115 136 uucuCCCUCUGGGUCCGAGCCU |||| ||: :|| |||| tgtcGGGAAACTGGGGGGCGGA Bin1; Amphl; Sh3p9 mmu-miR-666 236 267 CCGAGAGUG-UCGAC---------ACGGGCGa | | | | | ||:|| ||||||| GTCCCCCCCTAGTTGAGTTCCCGATGCCCGCa Bin1; Amphl; Sh3p9 mmu-miR-666 344 368 CC--GAGAGUGUCGAC-ACGGGcga || ||||: ::|| | ||||| GGTCCTCTTCTGGCAGCTGCCCtgg Bin1; Amphl; Sh3p9 mmu-miR-666 373 393 CCGAGAGUGUCGACACGGG-CGa ||| : |||| || |||| || GGCCTGCACA-CT-GGCCCAGCc Bin1; Amphl; Sh3p9 mmu-miR-670 259 278 aaguGGUGUAUGUGAGUCCCua ||:||| ::|||||| atgcCCGCAT--GTTCAGGGcg Bin1; Amphl; Sh3p9 mmu-miR-674 187 207 auguGGUGAGGGUAGAGUCACg ||: |||: :|||||| ccgtCCGACCCCG-TTCAGTGg Bin1; Amphl; Sh3p9 mmu-miR-675-5p 380 406 UGACACCCG---GGA--AAGGCGUGgu || ||| | ||| |||||| | ACACTGGCCCAGCCTGGTTCCGCTCtg Bin1; Amphl; Sh3p9 mmu-miR-675-5p 359 383 uGAC---ACCCGGGAAAGGCGUGgu ||| ||||| |:|||| gCTGCCCTGGGCAGGGCCTGCACac Bin1; Amphl; Sh3p9 mmu-miR-676* 276 295 CGUUCAGGAUUCCAACAUCUCa ||::| || ::|| || |||| GCGGG-CC-GGGGGTGCAGAGc Bin1; Amphl; Sh3p9 mmu-miR-681 320 342 uCGACG-GACGG-UCGCUCCGAc ||||| | || ||| :|||| gGCTGCGCCACCGAGCAGGGCTt Bin1; Amphl; Sh3p9 mmu-miR-683 310 338 cucCUGUG--UCGA----AUG--UCGUCC |||:| :||| || |||||| cctGACGCTTGGCTGCGCCACCGAGCAGG Bin1; Amphl; Sh3p9 mmu-miR-689 268 289 cCUGGGGCGGCUC-GCCCCUGC | :| | ||:| |||||::| tGTTCAGGGCGGGCCGGGGGTG Bin1; Amphl; Sh3p9 mmu-miR-692 163 188 cUC-ACUCCGCGA----GUUUCUCua || |||||:| | ||||||| aAGATGAGGTGGTTTTCCAAAGAGcc Bin1; Amphl; Sh3p9 mmu-miR-695 374 394 aaGUCAGUG-GAUACGGGUUAGA | | ||| ||: |||||: || gcCTG-CACACTG-GCCCAGCCT Bin1; Amphl; Sh3p9 mmu-miR-696 368 385 ggGUGUCGUUCGUGUGcg || :|| |||||| ggCAGGGCCTGCACACtg Bin1; Amphl; Sh3p9 mmu-miR-699 291 312 gCUCGGU-CCAGCGUG-ACGGA |||||| | | ||| ||||| aGAGCCACCGCCACACTTGCCT Bin1; Amphl; Sh3p9 mmu-miR-7 158 181 guuGUUU-UAGU-GAUCAGAAGGU |||| || | |:||:||||| cccCAAAGATGAGGTGGTTTTCCA Bin1; Amphl; Sh3p9 mmu-miR-702 258 282 CU-CGCCC---CAUUUCCCACCCGu || || | || |||| |||| GATGCCCGCATGTTCAGGGCGGGCc Bin1; Amphl; Sh3p9 mmu-miR-709 346 367 AGGAG--GA-CGGAGACGGagg ||||| || || ||||| TCCTCTTCTGGCAGCTGCCctg Bin1; Amphl; Sh3p9 mmu-miR-710 317 344 GAGUUGA-GAG--GG---GUUCUGAACC ||:::|| | | || ||:|:||||| CTTGGCTGCGCCACCGAGCAGGGCTTGG Bin1; Amphl; Sh3p9 mmu-miR-711 328 349 gaauguagagagGGGCCCAGGg |::|||||| caccgagcagggCTTGGGTCCt Bin1; Amphl; Sh3p9 mmu-miR-711 375 400 GAAUGUAGAGA---GG--GGCCCAGGG | |:|| | || || || |||:|| CCTGCA-CACTGGCCCAGCCTGGTTCC Bin1; Amphl; Sh3p9 mmu-miR-712* 301 328 GUUGUG---GGCC--CCCACUGA-GCGu | |||| || | | ||:|| ||| CCACACTTGCCTGACGCTTGGCTGCGCc Bin1; Amphl; Sh3p9 mmu-miR-714 326 354 CGCUGGCUGG--------CCGGGAGCAGc || ||||| | ||:|||| || GCCACCGAGCAGGGCTTGGGTCCTCTTCt Bin1; Amphl; Sh3p9 mmu-miR-718 120 138 gCUGUGGGCCGGCCCGCCUUc || ||: || |||||||| gGAAACTGGG--GGGCGGAAa Bin1; Amphl; Sh3p9 mmu-miR-718 257 282 GCUGUGGGC---C--GGCCCGCCuuc |||::|||| | | |||||| CGATGCCCGCATGTTCAGGGCGGgcc Bin1; Amphl; Sh3p9 mmu-miR-742 153 179 AAAUGGG----UCGUA--CCACCGAAAG | ||||| || || |||||:|||| TATACCCCCAAAG-ATGAGGTGGTTTTC Bin1; Amphl; Sh3p9 mmu-miR-744 243 267 cGA-CAA-UC--GGGAU-CGGGGCGU || ||| || ||| | | |||||| cCTAGTTGAGTTCCCGATG-CCCGCA Bin1; Amphl; Sh3p9 mmu-miR-744 222 243 cGACAAUCGG-GAU-CGGGGCGu ||| |||: ||: |:||| | cCTG-AAGCTGCTGTGTCCCCCc Bin1; Amphl; Sh3p9 mmu-miR-759 386 407 CAGUUUUAACAAACGUGAGACG | | |: || || |:|||||| GCCCAGCCTGGTTCCGCTCTGC Bin1; Amphl; Sh3p9 mmu-miR-761 210 235 acacaGUCA-AAG---UGGGACGACg |||| ||| | |||||| ttctcCAGTGTTCCTGAAGCTGCTGt Bin1; Amphl; Sh3p9 mmu-miR-762 231 265 CGAGACAGGG-----------CCGGGGU--CGGGg ||| |||||| | :|||: |||| GCTGTGTCCCCCCCTAGTTGAGTTCCCGATGCCCg Bin1; Amphl; Sh3p9 mmu-miR-763 378 396 CG-GUGACCAAGAAGGGUC-GACC || |||||| ||||| |||| GCACACTGG-----CCCAGCCTGG Bin1; Amphl; Sh3p9 mmu-miR-764-3p 356 380 uGUCAACGGUGA----UACCGGAGGa ||| |||| || | ||||| | gCAGCTGCC-CTGGGCAGGGCCTGCa Bin1; Amphl; Sh3p9 mmu-miR-770-3p 369 392 gGUC---GAGGUGCAGUCCGGGUgc ||| || ||| | |||||| gCAGGGCCTGCAC-ACTGGCCCAgc Bin1; Amphl; Sh3p9 mmu-miR-92 272 294 GUCCGGCCCUG--UUCACGUuau |||| |||| | ::||||| CAGGGCGGGCCGGGGGTGCAgag

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Bin1 RAID00044498 mmu-miR-7119-5p miRNA MIMAT0028135 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID00079031 mmu-miR-6941-5p miRNA MIMAT0027782 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID00175776 mmu-miR-873a-5p miRNA MIMAT0004936 Bin1 mRNA 30948 Prediction 0.2381 Bin1 RAID00348017 mmu-miR-6958-3p miRNA MIMAT0027817 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID00638379 mmu-miR-22-3p miRNA MIMAT0000531 Bin1 mRNA 30948 Prediction 0.2202 Bin1 RAID00911171 mmu-miR-495-3p miRNA MIMAT0003456 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID00912446 mmu-miR-6370 miRNA MIMAT0025114 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID01181663 mmu-miR-22-5p miRNA MIMAT0004629 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID01436972 mmu-miR-186-5p miRNA MIMAT0000215 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID01980632 mmu-miR-7224-3p miRNA MIMAT0028417 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID02254830 mmu-miR-6990-3p miRNA MIMAT0027883 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID02276770 mmu-miR-7a-5p miRNA MIMAT0000677 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID02435554 mmu-miR-1192 miRNA MIMAT0005850 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID02615565 mmu-miR-875-5p miRNA MIMAT0004937 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID02804982 mmu-miR-21a-3p miRNA MIMAT0004628 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID03368386 mmu-miR-7b-5p miRNA MIMAT0000678 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID03503858 mmu-miR-6925-5p miRNA MIMAT0027750 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID03692600 mmu-miR-7024-5p miRNA MIMAT0027952 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID03803367 mmu-miR-7220-3p miRNA MIMAT0028409 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID03828220 mmu-miR-490-3p miRNA MIMAT0003780 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID03862954 mmu-miR-7119-3p miRNA MIMAT0028136 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID03973539 mmu-miR-7023-5p miRNA MIMAT0027950 Bin1 mRNA 30948 Prediction 0.1828 Bin1 RAID04923761 G730013B05Rik lncRNA 619312 Bin1 protein 30948 Microarray//RNA-seq 0.6606