DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence Rag1 ATTTA 95-3217 3624-3628;3723-3727;3737-3741;3833-3837

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004524 mmu-miR-30b* 19373 Rag1 cugcaUUUGUAGGUGUAGGGUc |: | |:: ||||||| ccaccAGUCCUUU-CAUCCCAu 2 18 1901 1921 [mm9:2:101479909-101479929:-] 0.5442 143 7 -15.92 -0.4866 MIMAT0004529 mmu-miR-125b* 19373 Rag1 uccAGGGUUCUUGGACUGA-ACa || ||| |::||||| || aucUCAGAAGCAUUUGACUCUGg 2 20 2095 2117 [mm9:2:101479713-101479735:-] 0.6174 127 0 -15.60 -0.1269 MIMAT0000154 mmu-miR-142-5p 19373 Rag1 ucaucACGAAAGAUGAAAUAc ||: ||:|||||||| gggguUGUAUUUUACUUUAUu 2 17 3130 3150 [mm9:2:101478680-101478700:-] 0.5323 164 7 -11.35 -0.8101 MIMAT0000154 mmu-miR-142-5p 19373 Rag1 ucAUCACGAAAGAUG-AAAUAc ||| : |||||| ||||| ucUAGGAUAUUCUACUUUUAUu 2 20 2270 2291 [mm9:2:101479539-101479560:-] 0.6198 131 0 -10.83 -0.5253 MIMAT0000154 mmu-miR-142-5p 19373 Rag1 ucaucacgAAAGAUG-AAAUAc || |||| ||||| uuuucucgUUGCUACAUUUAUg 2 14 601 622 [mm9:2:101481208-101481229:-] 0.5413 121 0 -10.36 -0.2268 MIMAT0004539 mmu-miR-183* 19373 Rag1 aauacCGGGAAG--CCAUUA-AGUg ||::||| ||||| ||| uuaguGCUUUUCUAUGUAAUCUCAa 2 18 869 893 [mm9:2:101480937-101480961:-] 0.5187 120 0 -12.27 -0.2322 MIMAT0000218 mmu-miR-24-1* 19373 Rag1 ugACUAUAGUCGA-GUCAU-CCGUg || ||:|| | | ||| |||| uaUGCCAUUAGAUACUGUAUGGCAg 2 22 2976 3000 [mm9:2:101478830-101478854:-] 0.5323 124 0 -13.38 -0.1398 MIMAT0000367 mmu-miR-291a-5p 19373 Rag1 ucucucccGGAGGUGAAACUAc :||:| ||||||| uaguuuuuUCUUC-CUUUGAUu 2 15 1597 1617 [mm9:2:101480213-101480233:-] 0.6103 148 7 -12.73 -0.4632 MIMAT0000371 mmu-miR-293 19373 Rag1 ugUGAUGUUUGAGACG-CCGUGa |:|:|||| ||| ||||| ccAUUGCAAA---UGCAGGCACa 2 21 2303 2322 [mm9:2:101479508-101479527:-] 0.6224 124 0 -19.98 -0.3101 MIMAT0004574 mmu-miR-294* 19373 Rag1 ucuaucccggagguAAAACUCa ||||||| uuccuuuaaguaguUUUUGAGc 2 9 2824 2845 [mm9:2:101478985-101479006:-] 0.4936 140 7 -11.27 -0.1513 MIMAT0004575 mmu-miR-295* 19373 Rag1 cuUCACAC-GGGGUGUAAACUCa || || ||::: ||||||| acAGGCUGACCUUGAAUUUGAGa 2 21 2864 2886 [mm9:2:101478944-101478966:-] 0.4979 155 7 -14.02 -0.1383 MIMAT0004575 mmu-miR-295* 19373 Rag1 cuUCACACGG-GGUGUAAACUCa | ||| |: :: ||||||| gcAAUGUACUAUUUGAUUUGAGg 2 21 3259 3281 [mm9:2:101478549-101478571:-] 0.5269 147 7 -9.74 -0.1123 MIMAT0000375 mmu-miR-297a 19373 Rag1 ugUACGUGUACG---UGUGUAUGUa || :| ||: | ||||||| uaAUUUAGUUGUCAAAAACAUACAc 2 21 1812 1836 [mm9:2:101479994-101480018:-] 0.5722 143 7 -8.94 -0.4425 MIMAT0004578 mmu-miR-300* 19373 Rag1 ugUUUCCUAUUG-GAGAGA-AGUu :|| |||: | :||||| ||| ggGAAAGAUGUCUUUCUCUCUCAg 2 21 2590 2613 [mm9:2:101479217-101479240:-] 0.6070 127 0 -16.01 -0.1382 MIMAT0004579 mmu-miR-302a* 19373 Rag1 cguucaUGUU--GGUGCAAAUUCa |||| ::::||||||| gauuucACAAUUUUGUGUUUAAGu 2 17 3369 3392 [mm9:2:101478438-101478461:-] 0.5578 151 7 -13.74 -0.6105 MIMAT0004579 mmu-miR-302a* 19373 Rag1 cguUCAUGUUGGUGCAAAUUCa :| |:|| | ||||||| uuuGGAAUAA--AAGUUUAAGa 2 20 3394 3413 [mm9:2:101478417-101478436:-] 0.5578 148 7 -8.07 -1.0428 MIMAT0004622 mmu-let-7c-1* 19373 Rag1 ccuUUCGAUCUUCCAAC-AUGUc |||| || | ||| |||| ugcAAGC-AGUUGUUUGAUACAu 2 20 2951 2972 [mm9:2:101478858-101478879:-] 0.5323 121 0 -8.16 -0.1388 MIMAT0004624 mmu-miR-15a* 19373 Rag1 acuccGUCGUGUCAUACCGGAc ||| : ||||||| uuuucCAGGUUUAAAUGGCCUc 2 18 664 685 [mm9:2:101481145-101481166:-] 0.5413 141 7 -13.23 -0.2426 MIMAT0004627 mmu-miR-20a* 19373 Rag1 gaAAUUC--ACGAGCA----UUACGUCa ||||| | | | | ||||||| uuUUAAGACUCCCCAUUGCAAAUGCAGg 2 21 2291 2318 [mm9:2:101479512-101479539:-] 0.6211 142 7 -13.00 -0.1339 MIMAT0004629 mmu-miR-22* 19373 Rag1 auUUCGAACGGUGA-CUUCUUGa | |:|| | | | ||||||| aaAUGUUUUCAAAUGGAAGAACa 2 21 3299 3321 [mm9:2:101478509-101478531:-] 0.5578 155 7 -11.76 -0.4167 MIMAT0004631 mmu-miR-29a* 19373 Rag1 gaCUUGUGGUUUUCUUUAGUCa ||:|| ||::||||||||| aaGAGCAACAGGAGAAAUCAGu 2 21 211 232 [mm9:2:101481598-101481619:-] 0.5572 180 7 -26.39 -0.1078 MIMAT0004631 mmu-miR-29a* 19373 Rag1 gacUUGUGGUUUUCUUUAGUCa || | :|: ||||||| uauAAGA-UAGUUUAAAUCAGa 2 20 3016 3036 [mm9:2:101478794-101478814:-] 0.5323 141 7 -8.35 -0.6830 MIMAT0004640 mmu-miR-325 19373 Rag1 aacUAUCCUCCACGAGUUAUUu ||| | | :||||||| gucAUA--AAUUUUUCAAUAAu 2 20 723 742 [mm9:2:101481088-101481107:-] 0.5413 144 7 -5.51 -0.3046 MIMAT0000593 mmu-miR-344 19373 Rag1 ugucAGUCCGAAAC-CGA-UCUAGu |:| :|||| ||| ||||| uuuaUUAUAUUUUGUGCUGAGAUCu 2 20 408 432 [mm9:2:101481398-101481422:-] 0.5572 126 0 -13.14 -0.2882 MIMAT0004665 mmu-miR-218-1* 19373 Rag1 ccacgaacugccuuGGUACAAa ||||||| gaggaccuauauuuCCAUGUUa 2 9 3278 3299 [mm9:2:101478531-101478552:-] 0.5423 140 7 -10.10 -1.0048 MIMAT0004666 mmu-miR-33* 19373 Rag1 caCUACGU---GACACCUUUG-UAAc | |||| | ||||||| ||| ugGCUGCAGUUAUUUGGAAACUAUUc 2 21 1472 1497 [mm9:2:101480333-101480358:-] 0.6103 123 0 -12.87 -0.2275 MIMAT0004670 mmu-miR-7a* 19373 Rag1 auaccGUCUGACACUAAACAAc |:|| | | ||||||| aaaccCGGAAU-UAAUUUGUUu 2 18 3094 3114 [mm9:2:101478716-101478736:-] 0.5323 151 7 -8.10 -0.1876 MIMAT0004670 mmu-miR-7a* 19373 Rag1 auAC-CGUCUGACACUAAACAAc || || :| | ||||||| gcUGUGCUUUUUCU-AUUUGUUa 2 21 1100 1121 [mm9:2:101480709-101480730:-] 0.5388 141 7 -9.57 -0.5088 MIMAT0004670 mmu-miR-7a* 19373 Rag1 auaccgucugacacUAAACAAc ||||||| uuaauuuugucucaAUUUGUUu 2 9 2626 2647 [mm9:2:101479183-101479204:-] 0.6070 140 7 -4.89 -0.3588 MIMAT0000706 mmu-miR-362-5p 19373 Rag1 uaagUGUGGAUCCAAGGU-UCCUAa :|||||:| ||| ||||| uggaGCACCUGG---CCACAGGAUu 2 21 2180 2201 [mm9:2:101479629-101479650:-] 0.6089 124 0 -21.70 -0.1198 MIMAT0004704 mmu-miR-335-3p 19373 Rag1 ccaGUC-CU--CGUU-AUUACUUUUu ||| || |:|: |:||||||| gacCAGUGACUGUAGCUGAUGAAAAu 2 20 2493 2518 [mm9:2:101479312-101479337:-] 0.6083 152 7 -12.98 -0.1156 MIMAT0004704 mmu-miR-335-3p 19373 Rag1 ccaguccUCGUUAUUACUUUUu ||:| ||||||| uucacaaAGUAUGCAUGAAAAu 2 16 2647 2668 [mm9:2:101479162-101479183:-] 0.6070 147 7 -8.49 -0.1974 MIMAT0001093 mmu-miR-411* 19373 Rag1 ccAAUCAC-CUGGCACAAUGUAu ||| || |:: | |||||| uaUUAUUGUUAUUAUUUUACAUa 2 21 3159 3181 [mm9:2:101478649-101478671:-] 0.5269 127 6 -6.31 -0.1039 MIMAT0001637 mmu-miR-452 19373 Rag1 caGAGUCAA---AGGAGACGUUUGu ||| ||| || |:||||||| cuCUCUGUUUUGUCAUUUGCAAACu 2 21 1862 1886 [mm9:2:101479944-101479968:-] 0.5442 163 7 -18.88 -0.3997 MIMAT0004758 mmu-miR-463 19373 Rag1 gaUGGAAUAUACCACAGAU-AGu | :||| |||| ||||| || uaAGUUUAGAUGGGGUCUACUCa 2 21 1120 1142 [mm9:2:101480688-101480710:-] 0.5277 136 0 -16.24 -0.1341 MIMAT0005295 mmu-miR-376c* 19373 Rag1 auUUGUAUCUUCCUUAU--AGGUg |||||:| ||||| |||| gaAACAUGGUUUGAAUAAGUCCAg 2 21 983 1006 [mm9:2:101480824-101480847:-] 0.5647 120 0 -16.25 -0.1880 MIMAT0003186 mmu-miR-369-3p 19373 Rag1 uuucuaGUUGGUACAUAAUAa || ::| ||||||| uacacaCACUUAAGUAUUAUc 2 16 1832 1852 [mm9:2:101479978-101479998:-] 0.5662 151 7 -7.28 -0.3776 MIMAT0004789 mmu-miR-450a-3p 19373 Rag1 uacuuACGUUUCGUAGGGGUUa | :::| :|||||||| auuuuUUUGGAUUAUCCCCAAa 2 18 1201 1222 [mm9:2:101480608-101480629:-] 0.4768 153 7 -14.86 -0.5581 MIMAT0003189 mmu-miR-291b-5p 19373 Rag1 ccucucccGGAGGUGAAACUAg :||:| ||||||| uaguuuuuUCUUC-CUUUGAUu 2 15 1597 1617 [mm9:2:101480213-101480233:-] 0.6103 148 7 -14.07 -0.4632 MIMAT0003731 mmu-miR-671-5p 19373 Rag1 gagGUCGGG-GAGGUCCCGAAGGa || ::: :|| | ||||||| auaCAUUUUGUUCAAUGGCUUCCa 2 21 3191 3214 [mm9:2:101478616-101478639:-] 0.5269 151 7 -17.88 -0.4624 MIMAT0003739 mmu-miR-673-5p 19373 Rag1 gaGGUUCCUGGUCUCGAC-ACUc |||: |||:: ||||| ||| gaCCAGUGACUGUAGCUGAUGAa 2 21 2493 2515 [mm9:2:101479315-101479337:-] 0.6083 136 0 -21.96 -0.2772 MIMAT0003740 mmu-miR-674 19373 Rag1 auguggugagggUAGAGUCACg ||||||||| ccuuuccaagggAUCUCAGUGc 2 11 578 599 [mm9:2:101481231-101481252:-] 0.5413 150 7 -23.28 -0.1251 MIMAT0003740 mmu-miR-674 19373 Rag1 auGUGGUGAGGGUAGAGU-CACg :::| :||:| ||||| ||| gaUGUCUUUCUC-UCUCAGGUGg 2 21 2596 2617 [mm9:2:101479213-101479234:-] 0.6070 122 0 -19.44 -0.1245 MIMAT0003457 mmu-miR-680 19373 Rag1 ggggGUACAGU-CGUCUACGGg |||| || |||||||| aaagCAUG-CACACAGAUGCCa 2 18 2561 2581 [mm9:2:101479249-101479269:-] 0.6070 154 7 -20.95 -0.1375 MIMAT0003459 mmu-miR-682 19373 Rag1 gucuGAAGUGACA---CUGACGUc | ||| ||| ||||||| uuucCCUCAGUGUGGAGACUGCAc 2 18 2234 2257 [mm9:2:101479573-101479596:-] 0.6143 152 7 -14.67 -0.1098 MIMAT0003469 mmu-miR-690 19373 Rag1 aaaccaaCACUCGG-AUCGGAAa || | :: ||||||| auuaagaGUCAUUUAUAGCCUUa 2 16 849 871 [mm9:2:101480959-101480981:-] 0.5187 142 7 -13.88 -0.6864 MIMAT0003474 mmu-miR-694 19373 Rag1 gaAGUCCGU-UGUAAAAGUc ||| :| :||||||| guUCAAAUACUUAUUUUCAu 2 18 3325 3344 [mm9:2:101478486-101478505:-] 0.5578 144 7 -7.53 -0.7456 MIMAT0003480 mmu-miR-297b-5p 19373 Rag1 uguacaaguacgUGUGUAUGUa | ||||||| uuuaguugucaaAAACAUACAc 2 11 1815 1836 [mm9:2:101479994-101480015:-] 0.5722 142 7 -9.67 -0.4360 MIMAT0003485 mmu-miR-455* 19373 Rag1 gcUACAUCAGGUUU-CCGUGUAu || || |:||| ||||||| acAU-UAUCCUAAAUGGCACAUg 2 21 1696 1717 [mm9:2:101480113-101480134:-] 0.6103 157 7 -16.93 -0.2689 MIMAT0003485 mmu-miR-455* 19373 Rag1 gcuacaucagguuUCCGUGUAu |||||||| ccauugcaaaugcAGGCACAUa 2 10 2303 2324 [mm9:2:101479506-101479527:-] 0.6224 145 7 -14.51 -0.3988 MIMAT0003496 mmu-miR-706 19373 Rag1 aaaaaacucugucCCAAAGAGa |||||||| aaggagccuuugaGGUUUCUCu 2 10 525 546 [mm9:2:101481284-101481305:-] 0.5464 145 7 -17.52 -0.1414 MIMAT0003498 mmu-miR-708* 19373 Rag1 gaucuUCGAGUGUCAGAUCAAc :|| :: ||||||| uguauGGCAGUUGUUCUAGUUu 2 18 2991 3012 [mm9:2:101478818-101478839:-] 0.5323 141 7 -9.82 -0.2036 MIMAT0003504 mmu-miR-713 19373 Rag1 cgacaCACGGAAGUCACGu | | : ||||||| uccaaGGGAUCUCAGUGCa 2 15 582 600 [mm9:2:101481230-101481248:-] 0.5413 142 7 -14.70 -0.1763 MIMAT0003507 mmu-miR-500 19373 Rag1 acUUGGGAACGGGUCCACGUAa ::| | ||::: ||||||| auGGCACAUGUUU-GGUGCAUa 2 21 1708 1728 [mm9:2:101480102-101480122:-] 0.6103 150 7 -15.69 -0.4064 MIMAT0003509 mmu-miR-501-3p 19373 Rag1 guuuagGAACGGGCCCACGUAa | ||::: ||||||| auggcaCAUGUUU-GGUGCAUa 2 17 1708 1728 [mm9:2:101480102-101480122:-] 0.6103 146 7 -14.13 -0.4064 MIMAT0003510 mmu-miR-717 19373 Rag1 ucuCUUCCAUAGAGAC-AGACUc | | | |:|||| ||||| aauGCAUUUUUUUCUGCUCUGAa 2 20 2415 2437 [mm9:2:101479393-101479415:-] 0.5526 123 0 -11.45 -0.3307 MIMAT0004839 mmu-miR-743b-5p 19373 Rag1 acuaccuguggUCAGACUUGu | ||||||| cccgauuuuugAAUCUGAACc 2 11 1242 1262 [mm9:2:101480568-101480588:-] 0.5299 142 7 -9.68 -0.2052 MIMAT0004845 mmu-miR-881* 19373 Rag1 ucuacaCUGACA-AUAGAGAGAc || ||| | ||||||| gggaaaGA-UGUCUUUCUCUCUc 2 17 2590 2611 [mm9:2:101479219-101479240:-] 0.6070 149 7 -15.70 -0.2322 MIMAT0004845 mmu-miR-881* 19373 Rag1 ucUACACUGACAAUAGA-GAGAc ||| |:| || ||| |||| caAUG-CAUUUUUUUCUGCUCUg 2 21 2414 2435 [mm9:2:101479395-101479416:-] 0.5526 122 0 -11.56 -0.3388 MIMAT0004846 mmu-miR-881 19373 Rag1 agauAAGUCUUUUCUGUGUCAa |||| | ||||||| agauUUCAAAUUCUACACAGUu 2 19 2725 2746 [mm9:2:101479084-101479105:-] 0.5618 150 7 -11.54 -0.2775 MIMAT0004846 mmu-miR-881 19373 Rag1 agauaagucuuuUCUGUGUCAa | ||||||| uugucagucuucAUACACAGUa 2 11 1631 1652 [mm9:2:101480178-101480199:-] 0.6103 142 7 -12.94 -0.8484 MIMAT0004846 mmu-miR-881 19373 Rag1 agAUAAGUCUUUUCUG-UGUCAa | | || ||| || ||||| gaUCUACACUAAACACUACAGUu 2 21 1340 1362 [mm9:2:101480468-101480490:-] 0.4899 124 0 -10.76 -0.2024 MIMAT0004849 mmu-miR-883a-3p 19373 Rag1 uaUGACUCUCGACAACGUCAAu :|||||| || ||||||| guGCUGAGAUCU-AUGCAGUUu 2 21 421 441 [mm9:2:101481389-101481409:-] 0.5572 166 7 -22.26 -0.5488 MIMAT0004849 mmu-miR-883a-3p 19373 Rag1 uaugacucUCGACAACGUCAAu ||: | ||||||| aacccucuAGUGGCUGCAGUUa 2 15 1462 1483 [mm9:2:101480347-101480368:-] 0.6103 150 7 -13.62 -0.1998 MIMAT0004851 mmu-miR-883b-3p 19373 Rag1 uaUGACUCUCUACAACGUCAAu :|||||| | ||||||| guGCUGAGAUCU-AUGCAGUUu 2 21 421 441 [mm9:2:101481389-101481409:-] 0.5572 158 7 -20.03 -0.5524 MIMAT0004851 mmu-miR-883b-3p 19373 Rag1 uaugacucUCUACAACGUCAAu || | ||||||| aacccucuAGUGGCUGCAGUUa 2 15 1462 1483 [mm9:2:101480347-101480368:-] 0.6103 146 7 -12.77 -0.1998 MIMAT0004865 mmu-miR-297c 19373 Rag1 ugUACAUGUACG---UGUGUAUGUa || || ||: | ||||||| uaAUUUAGUUGUCAAAAACAUACAc 2 21 1812 1836 [mm9:2:101479994-101480018:-] 0.5722 147 7 -8.64 -0.4425 MIMAT0004865 mmu-miR-297c 19373 Rag1 ugUACAUGUACGUGUGU-AUGUa || |||| :| ||| |||| ggAUCUACA-CUAAACACUACAg 2 21 1339 1360 [mm9:2:101480470-101480491:-] 0.4899 122 0 -10.05 -0.3685 MIMAT0004884 mmu-miR-466h 19373 Rag1 auguguGUUCGUGUACGUGUGu :|| :||||||||| ugggauUAAAAGCAUGCACACa 2 17 2553 2574 [mm9:2:101479256-101479277:-] 0.6070 156 7 -18.76 -0.3933 MIMAT0004930 mmu-miR-466d-5p 19373 Rag1 guACA-UGUACAUGCGUGUGUGu ||| | | |: ||||||| guUGUCAAAAACAUACACACACu 2 21 1819 1841 [mm9:2:101479989-101480011:-] 0.5882 147 7 -14.40 -0.9163 MIMAT0005292 mmu-miR-582-3p 19373 Rag1 aaCCCAAGUCAAC--AAGU-UGUCc || |||| || |||| |||| ugGGUUUCAUAUGAUUUCACACAGa 2 21 2703 2727 [mm9:2:101479103-101479127:-] 0.5844 127 0 -14.92 -0.8182 MIMAT0005293 mmu-miR-467e 19373 Rag1 ugUAUAUGUACGAGUGUGAAUa | | |||| | |||||||| ucAAAAACAUACACACACUUAa 2 21 1823 1844 [mm9:2:101479986-101480007:-] 0.5882 168 7 -13.96 -0.5219 MIMAT0005830 mmu-miR-466l 19373 Rag1 uuaUACACACGU-AC--AUAAAUAu |||||| || || ||||||| aacAUGUGUACAUUGUUUAUUUAUa 2 20 1161 1185 [mm9:2:101480645-101480669:-] 0.4238 165 7 -13.73 -0.6199 MIMAT0005831 mmu-miR-669k 19373 Rag1 aacguacgcacAUAUACGUAu | ||||||| ucguugcuacaUUUAUGCAUa 2 11 606 626 [mm9:2:101481204-101481224:-] 0.5413 142 7 -11.76 -0.6912 MIMAT0005831 mmu-miR-669k 19373 Rag1 aacguacgcacaUAUACGUAu :||||||| uguuuucacaaaGUAUGCAUg 2 10 2643 2663 [mm9:2:101479167-101479187:-] 0.6070 141 7 -9.68 -0.2309 MIMAT0005831 mmu-miR-669k 19373 Rag1 aacgUACGCACAUAUAC-GUAu || | |||:|||| ||| uuugAUACAUGUGUAUGCCAUu 2 18 2963 2984 [mm9:2:101478846-101478867:-] 0.5323 129 0 -11.79 -0.1070 MIMAT0005832 mmu-miR-669g 19373 Rag1 uaguacAGUUGUGUAUGUUACGu | :| | :|||||||| cagggcUGGAGAAGUACAAUGCa 2 18 2398 2420 [mm9:2:101479410-101479432:-] 0.5526 153 7 -15.03 -0.2882 MIMAT0005833 mmu-miR-669d 19373 Rag1 ugUAUAUGUACGUGUGUG--UUCa | | |||| ||||||| ||| ucAAAAACAUACACACACUUAAGu 2 21 1823 1846 [mm9:2:101479984-101480007:-] 0.5882 124 0 -17.07 -0.4337 MIMAT0005842 mmu-miR-669h-3p 19373 Rag1 acacguacacacAUAUACGUAu | ||||||| cucguugcuacaUUUAUGCAUa 2 11 605 626 [mm9:2:101481204-101481225:-] 0.5413 142 7 -9.38 -0.6987 MIMAT0005842 mmu-miR-669h-3p 19373 Rag1 acacguacacacaUAUACGUAu :||||||| uuguuuucacaaaGUAUGCAUg 2 10 2642 2663 [mm9:2:101479167-101479188:-] 0.6070 141 7 -9.68 -0.2351 MIMAT0005842 mmu-miR-669h-3p 19373 Rag1 acACGUACACACAUAUAC-GUAu || || |||:|||| ||| uuUG-AUACAUGUGUAUGCCAUu 2 21 2963 2984 [mm9:2:101478846-101478867:-] 0.5323 122 0 -12.26 -0.1049 MIMAT0005845 mmu-miR-466k 19373 Rag1 aguGUACAUGUACAUGUGUGUGu || ||| ||||||||| uguCAAAAACA--UACACACACu 2 21 1821 1841 [mm9:2:101479989-101480009:-] 0.5882 153 7 -15.73 -0.9064 MIMAT0005848 mmu-miR-466j 19373 Rag1 aauguguguacgUGUACGUGUGu :||||||||| uugggauuaaaaGCAUGCACACa 2 12 2552 2574 [mm9:2:101479256-101479278:-] 0.6070 151 7 -17.93 -0.3994 MIMAT0005849 mmu-miR-1191 19373 Rag1 aucccGAUGUAUCAUUCUGAc :||: | ||||||| uacuuUUAU-UUUUAAGACUc 2 17 2282 2301 [mm9:2:101479529-101479548:-] 0.6211 142 7 -8.56 -0.3468 MIMAT0005855 mmu-miR-467h 19373 Rag1 ugUAUAUGUACGUGUGUGAAUa | | |||| |||||||||| ucAAAAACAUACACACACUUAa 2 21 1823 1844 [mm9:2:101479986-101480007:-] 0.5882 176 7 -19.03 -0.5219 MIMAT0007871 mmu-miR-1892 19373 Rag1 uaggagggagggcAGGGGUUUa |||||||| uuuuuuuggauuaUCCCCAAAg 2 10 1202 1223 [mm9:2:101480607-101480628:-] 0.4768 145 7 -15.26 -0.3260 MIMAT0007875 mmu-miR-1898 19373 Rag1 cuaggggacACUUG-GAACUGGa || || ||||||| uguggagacUGCACACUUGACCc 2 14 2244 2266 [mm9:2:101479564-101479586:-] 0.6198 148 7 -16.28 -0.1189 MIMAT0009393 mmu-miR-1930 19373 Rag1 ugcgacGUCCAUGAUACCUCCa || | | ||||||| ucaccaCAAGGA--AUGGAGGa 2 17 2338 2357 [mm9:2:101479473-101479492:-] 0.6224 141 7 -14.64 -0.2282 MIMAT0009409 mmu-miR-1944 19373 Rag1 uuagucuuGAACUGUAAGUCGU-GUCUc || ||| | |||| |||| ucuguuguCUAUACAGU-AGCAGCAGAa 2 20 1304 1330 [mm9:2:101480500-101480526:-] 0.4631 121 0 -13.77 -0.1972 MIMAT0009415 mmu-miR-1948 19373 Rag1 gacAUGCUCAC-GAGACG-GAUUu ||| : || || ||| |||| ccuUACAGAUGUCUGUGCACUAAu 2 20 1927 1950 [mm9:2:101479880-101479903:-] 0.5973 122 0 -13.64 -0.2807 MIMAT0009416 mmu-miR-1949 19373 Rag1 uuGAUAC-GACUGUAGGACCA-UAUc | ||| | |: |::|||| ||| ugCCAUGUCAUAUUUUUUGGUCAUAu 2 23 445 470 [mm9:2:101481360-101481385:-] 0.5339 121 0 -7.85 -0.7750 MIMAT0009417 mmu-miR-1950 19373 Rag1 acugguAUAGGAAUCUACGUCu |||: |||||||| gcuuucUAUUGAAAGAUGCAGc 2 17 1748 1769 [mm9:2:101480061-101480082:-] 0.5562 152 7 -13.70 -0.2495 MIMAT0009419 mmu-miR-669m 19373 Rag1 uauaCAAACACAC-CUACA-UAUa |||| | || |||| ||| ugcaGUUUUUUUGCCAUGUCAUAu 2 19 434 457 [mm9:2:101481373-101481396:-] 0.5339 121 0 -5.02 -0.3951 MIMAT0009423 mmu-miR-1952 19373 Rag1 guCUU-CCUCCCAC-CUCu ||| || ||||| ||| auGAAUGGUGGGUGAGAGg 2 16 2521 2539 [mm9:2:101479291-101479309:-] 0.6070 122 0 -20.30 -0.3074 MIMAT0009460 mmu-miR-1982.1 19373 Rag1 gacACCCUCUUGUAUCCCACUCu | | |||:: ||||||| aaaUUGAUGAAUGGUGGGUGAGa 2 21 2515 2537 [mm9:2:101479293-101479315:-] 0.6070 152 7 -18.78 -0.5544 MIMAT0011210 mmu-miR-2134 19373 Rag1 cguggggcaaAGGGUUCUg |||||||| caguuuauaaUCCCAAGAg 2 10 1358 1376 [mm9:2:101480454-101480472:-] 0.4899 145 7 -13.08 -0.1692 MIMAT0011286 mmu-miR-2182 19373 Rag1 gcgccGCACCCUUUAC-ACCGCa | ||| : ||| ||||| uacucCCUGGAGCAUGCUGGCGc 2 18 1977 1999 [mm9:2:101479831-101479853:-] 0.5820 121 0 -15.15 -0.1025 MIMAT0012774 mmu-miR-664 19373 Rag1 aucCGACCCCUCA-U-UUACU-UAu ||| | |||| | ||||| || uuuGCUAGUGAGUCAUAAUGAUAUg 2 20 1561 1585 [mm9:2:101480245-101480269:-] 0.6103 125 0 -10.76 -0.5933 MIMAT0015642 mmu-miR-3471 19373 Rag1 uuaCGGAAUGUCAACCUAGAGu ||||| | ||||||| gugGCCUUUCCAAGGGAUCUCa 2 20 574 595 [mm9:2:101481235-101481256:-] 0.5413 155 7 -22.64 -0.1878 MIMAT0015642 mmu-miR-3471 19373 Rag1 uuacggaaugucAACCUAGAGu | ||||||| -----------aUAGGAUCUCc 2 11 1 11 [mm9:2:101481819-101481829:-] 0.5942 142 7 -11.04 -0.2001 MIMAT0015643 mmu-miR-3472 19373 Rag1 ccaagGAAGGUCGAAGACCGAUAAu || :| || | |||||||| guagaCUAUC-GCCUAUGGCUAUUu 2 21 2209 2232 [mm9:2:101479598-101479621:-] 0.6089 158 7 -16.54 -0.3288 MIMAT0015644 mmu-miR-1186b 19373 Rag1 caccACGUACGGAAAUUAGGGu | || |::| ||||||| acacUACA-GUUUAUAAUCCCa 2 19 1352 1372 [mm9:2:101480458-101480478:-] 0.4899 152 7 -16.20 -0.1842 MIMAT0000146 mmu-miR-134 19373 Rag1 gggGAGACCAGUUGGUC-AGUGu |||| | ||:||| |||| ugaCUCUCCU-AAUCAGAUCACa 2 20 2144 2165 [mm9:2:101479665-101479686:-] 0.6174 125 0 -21.37 -0.3499 MIMAT0000150 mmu-miR-138 19373 Rag1 gccggacuAAGUG--UUGUGGUCGa ||::| ::||||||| uucaguauUUUGCCAGGCACCAGCa 2 16 1511 1535 [mm9:2:101480295-101480319:-] 0.6103 146 7 -15.59 -0.2785 MIMAT0000155 mmu-miR-142-3p 19373 Rag1 agguauuucauccUUUGUGAUGu ||||||||| ugggaucuacacuAAACACUACa 2 11 1337 1359 [mm9:2:101480471-101480493:-] 0.5261 150 7 -14.75 -0.5756 MIMAT0000156 mmu-miR-144 19373 Rag1 ucAUGUAGUAGAUAUGACAu |: :|: |:|||||||| ucUGGGUUCUUUAUACUGUg 2 19 1282 1301 [mm9:2:101480529-101480548:-] 0.5023 158 7 -14.00 -0.1384 MIMAT0000156 mmu-miR-144 19373 Rag1 ucAUGUAGUAG-AUAUGACAu ||:: |||: ||||||| ugUAUGCCAUUAGAUACUGUa 2 19 2974 2994 [mm9:2:101478836-101478856:-] 0.5323 153 7 -17.07 -0.1093 MIMAT0000157 mmu-miR-145 19373 Rag1 ucccuAAGGAC--CCUUUUGACCUg ||:||| :|||||||| auuuuUUUCUGCUCUGAAACUGGAa 2 19 2420 2444 [mm9:2:101479386-101479410:-] 0.5811 153 7 -16.38 -0.2410 MIMAT0000159 mmu-miR-149 19373 Rag1 cccucacuucUGUGCCUCGGUCu |: : ||||||| uugcuuaguuAUCUAGAGCCAGc 2 14 801 823 [mm9:2:101481007-101481029:-] 0.5413 141 7 -14.46 -0.1654 MIMAT0000160 mmu-miR-150 19373 Rag1 gugaccauguucccAACCCUCu ||||||| ggaauuaauuuguuUUGGGAGa 2 9 3100 3121 [mm9:2:101478709-101478730:-] 0.5323 140 7 -12.92 -0.7296 MIMAT0000163 mmu-miR-153 19373 Rag1 cuaGUGAAA-AC-ACU---GAUACGUu :|:||| || ||| ||||||| uuaUAUUUUGUGCUGAGAUCUAUGCAg 2 20 412 438 [mm9:2:101481392-101481418:-] 0.5572 152 7 -15.89 -0.3657 MIMAT0000165 mmu-miR-155 19373 Rag1 uggggAUAGUG-UUAAUCGUAAUu | |:|| ||||||||| ucauaUUUUACUUUUUAGCAUUAu 2 19 3341 3364 [mm9:2:101478466-101478489:-] 0.5578 153 7 -11.70 -0.8061 MIMAT0000209 mmu-miR-129-5p 19373 Rag1 cguuCGGGUCUGGCGUUUUUc |:| || :||||||| aguuGUCAAGUGUGCAAAAAu 2 18 1674 1694 [mm9:2:101480136-101480156:-] 0.6103 153 7 -10.89 -0.3023 MIMAT0000211 mmu-miR-182 19373 Rag1 gccacacUCAA-GAUGGUAACGGUUu |||| ||: ||||||| acauagaAGUUGGUAU--UUGCCAAu 2 19 12 35 [mm9:2:101481795-101481818:-] 0.5244 146 7 -12.09 -0.1865 MIMAT0000212 mmu-miR-183 19373 Rag1 ucACUUAAGAUGGU-CACGGUAu || || | ||:: ||||||| ugUGCAUGCCACUGUGUGCCAUg 2 21 300 322 [mm9:2:101481508-101481530:-] 0.5572 159 7 -18.50 -0.2582 MIMAT0000215 mmu-miR-186 19373 Rag1 ucggguUUUCCUCUUAAGAAAc || | : ||||||| uuuggcAAUGUGUUAUUCUUUu 2 17 1027 1048 [mm9:2:101480782-101480803:-] 0.5647 144 7 -5.71 -0.4127 MIMAT0000233 mmu-miR-200b 19373 Rag1 agUAGUAAU-GGUCCGUCAUAAu :|| ||| | ||||||| auGUCCUUAGGAAUUCAGUAUUu 2 21 1498 1520 [mm9:2:101480310-101480332:-] 0.6103 147 7 -11.00 -0.3794 MIMAT0000233 mmu-miR-200b 19373 Rag1 aguagUAAUGGUCCGUCAUAAu || :|| ||||||| uuuaaAUGGCC--UCAGUAUUg 2 18 673 692 [mm9:2:101481138-101481157:-] 0.5413 142 7 -11.43 -0.1591 MIMAT0004576 mmu-miR-296-3p 19373 Rag1 ccuCUCGGAGGUGG--GUUGGGAg ||| :|:| |: ||||||| uuuGAGGUUUCUCUAACAACCCUg 2 20 533 556 [mm9:2:101481274-101481297:-] 0.5439 154 7 -23.74 -0.1198 MIMAT0000516 mmu-miR-148a 19373 Rag1 ugUUUCAAGACAUCACGU-GACu :||||| | |||| ||| auGAAGUUAGAGAAUGCACCUGu 2 21 741 763 [mm9:2:101481067-101481089:-] 0.5413 120 0 -12.19 -0.4015 MIMAT0000555 mmu-miR-324-5p 19373 Rag1 ugugGUUACGGGAUCCCCUACGc ||: | | | ||||||| gcugCAGGGGACCA-GGGAUGCa 2 20 266 287 [mm9:2:101481543-101481564:-] 0.5572 145 7 -17.09 -0.1223 MIMAT0000580 mmu-miR-148b 19373 Rag1 ugUUUCAAGACAC-UACGU-GACu :||||| | | ||||| ||| auGAAGUU-AGAGAAUGCACCUGu 2 21 741 763 [mm9:2:101481067-101481089:-] 0.5413 121 0 -13.71 -0.4015 MIMAT0004651 mmu-miR-340-5p 19373 Rag1 uuAGUCAGAGUAACGAAAUAUu | | ||| : | ||||||| cuUGAUUCUGGGUUCUUUAUAc 2 21 1276 1297 [mm9:2:101480533-101480554:-] 0.5023 156 7 -6.53 -0.2368 MIMAT0000590 mmu-miR-342-3p 19373 Rag1 ugcccacgcUA-AAGACAC-ACUCu || ||:|||| |||| caauuuauuAUAUUUUGUGCUGAGa 2 15 405 429 [mm9:2:101481401-101481425:-] 0.5572 121 0 -14.64 -0.5669 MIMAT0000657 mmu-miR-200c 19373 Rag1 agguagUAAUGGGCCGUCAUAAu || :||: ||||||| guuuaaAUGGCCU--CAGUAUUg 2 18 672 692 [mm9:2:101481138-101481158:-] 0.5413 146 7 -12.16 -0.1476 MIMAT0000657 mmu-miR-200c 19373 Rag1 agguAGUAAUGGG--CC----GUCAUAAu |||| ||: || ||||||| cuauUCAUGUCCUUAGGAAUUCAGUAUUu 2 20 1492 1520 [mm9:2:101480310-101480338:-] 0.6103 141 7 -14.07 -0.3794 MIMAT0000667 mmu-miR-33 19373 Rag1 acguuacgUUGAUGUUACGUg || ||||||||| ggcuggagAAGUACAAUGCAu 2 14 2401 2421 [mm9:2:101479409-101479429:-] 0.5526 157 7 -16.19 -0.1971 MIMAT0000673 mmu-miR-181b 19373 Rag1 uggguggCUGUCGU--UAC-UUACAa |||| || ||| ||||| agguuuaGACACCAGGAUGCAAUGUa 2 17 3241 3266 [mm9:2:101478564-101478589:-] 0.5269 123 0 -16.06 -0.3862 MIMAT0000673 mmu-miR-181b 19373 Rag1 ugGGUGGCU--GUCGUUACU-UACAa |:| :|| || :||||| |||| ugCUAGUGAGUCA-UAAUGAUAUGUu 2 22 1563 1587 [mm9:2:101480243-101480267:-] 0.6103 122 0 -14.91 -0.5063 MIMAT0000674 mmu-miR-181c 19373 Rag1 ugaguggcuGUCCAAC-UUACAa |||| || ||||| uuuagacacCAGGAUGCAAUGUa 2 14 3244 3266 [mm9:2:101478564-101478586:-] 0.5269 121 0 -14.00 -0.3893 MIMAT0000677 mmu-miR-7a 19373 Rag1 uguuGUUUUAGUGA--UCAGAAGGu ||:: |: || |||||||| agucCAGGCUUUCUAAAGUCUUCCu 2 20 1000 1024 [mm9:2:101480806-101480830:-] 0.5647 154 7 -14.97 -0.3693 MIMAT0000678 mmu-miR-7b 19373 Rag1 uguuguuuuAGUGUUCAGAAGGu || ||||||||| uccaggcuuUCUAAAGUCUUCCu 2 15 1002 1024 [mm9:2:101480806-101480828:-] 0.5647 154 7 -16.33 -0.3693 MIMAT0000679 mmu-miR-217 19373 Rag1 aggucAGUCAAGGACUACGUCAu | || ||: ||||||| ugugcUGAGAUCU--AUGCAGUu 2 19 420 440 [mm9:2:101481390-101481410:-] 0.5572 147 7 -11.72 -0.4670 MIMAT0000679 mmu-miR-217 19373 Rag1 agGUCAGUCAAGGAC-UA-CGUCAu || |:|| | ||| || ||||| gcCA-UUAGAUACUGUAUGGCAGUu 2 22 2979 3002 [mm9:2:101478828-101478851:-] 0.5323 126 0 -19.12 -0.2572 MIMAT0000704 mmu-miR-361 19373 Rag1 cauggggaccUCUAAGACUAUu | ||||||||| uaaucagaucACAUUCUGAUAa 2 13 2153 2174 [mm9:2:101479656-101479677:-] 0.6132 152 7 -12.87 -0.4629 MIMAT0003151 mmu-miR-378 19373 Rag1 ggaAGACUGAGGUUCAGGUCa |:||| | |||||||| uggUUUGAAU--AAGUCCAGg 2 19 989 1007 [mm9:2:101480823-101480841:-] 0.5647 155 7 -19.55 -0.2384 MIMAT0001091 mmu-miR-410 19373 Rag1 ugucCGGUAGACACAAU-AUAa |::||: ||||| ||| uauuGUUAUUAUUGUUAUUAUu 2 18 3153 3174 [mm9:2:101478656-101478677:-] 0.5296 121 0 -6.67 -0.7157 MIMAT0004747 mmu-miR-411 19373 Rag1 gcaugcgauaUGC-CAGAUGAu ||| ||||||| aauggcuuccACGAGUCUACUu 2 12 3204 3225 [mm9:2:101478605-101478626:-] 0.5269 146 7 -17.99 -0.1257 MIMAT0004750 mmu-miR-425 19373 Rag1 aguugCCCUCACUAG--CACAGUAa || :|| ||| ||||||| gucuaGGAGGUCAUCUGGUGUCAUa 2 19 704 728 [mm9:2:101481102-101481126:-] 0.5413 157 7 -16.52 -0.2760 MIMAT0004750 mmu-miR-425 19373 Rag1 aguugcCCUCACUAG--CACA-GUAa ||| ||| | |||| ||| aguagaGGAAUGAACAUGUGUACAUu 2 18 1149 1174 [mm9:2:101480656-101480681:-] 0.4702 120 0 -15.48 -0.1431 MIMAT0001537 mmu-miR-429 19373 Rag1 ugCCGUAAUGGUC--UGUCAUAAu ||: | | ::| ||||||| caGGUUUAAAUGGCCUCAGUAUUg 2 21 669 692 [mm9:2:101481138-101481161:-] 0.5413 143 7 -14.01 -0.1591 MIMAT0001537 mmu-miR-429 19373 Rag1 ugCCGUAAU-GGUCUGUCAUAAu | | ||| | ||||||| auGUCCUUAGGAAUUCAGUAUUu 2 21 1498 1520 [mm9:2:101480310-101480332:-] 0.6103 143 7 -9.89 -0.3794 MIMAT0003112 mmu-miR-489 19373 Rag1 cgacgguauaUACACCACAGUAa || ||||||||| cuaggaggucAUCUGGUGUCAUa 2 14 706 728 [mm9:2:101481102-101481124:-] 0.5413 157 7 -19.20 -0.2760 MIMAT0003130 mmu-miR-486 19373 Rag1 gagcCCCGUC--GAGUCAU-GUCCu | |||| :|:|||| |||| guguGUGCAGAUUUUAGUAGCAGGa 2 19 1071 1095 [mm9:2:101480735-101480759:-] 0.5388 125 0 -21.46 -0.1754 MIMAT0003183 mmu-miR-376c 19373 Rag1 ugcacuuuaaAGGAGAUACAa |::||||||| gccuuagugcUUUUCUAUGUa 2 12 866 886 [mm9:2:101480944-101480964:-] 0.5187 147 7 -11.23 -0.6121 MIMAT0003183 mmu-miR-376c 19373 Rag1 ugcacuuuaaaggAGAUACAa ||||||| cuuucuuuaaguaUCUAUGUa 2 9 3069 3089 [mm9:2:101478741-101478761:-] 0.5323 140 7 -7.12 -0.7953 MIMAT0003727 mmu-miR-374 19373 Rag1 gugaaucguccaACAUAAUAUa | ||||||| uuuccacuucaaUUUAUUAUAu 2 11 396 417 [mm9:2:101481413-101481434:-] 0.5572 142 7 -7.72 -0.6869 MIMAT0003450 mmu-miR-488 19373 Rag1 cuggUUCUUUGUC-GGAAAGUu || | ||| ||||||| ucuaAACCACCAGUCCUUUCAu 2 18 1895 1916 [mm9:2:101479914-101479935:-] 0.5442 152 7 -15.55 -0.1855 MIMAT0003780 mmu-miR-490 19373 Rag1 gucguaccucAGGAGGUCCAAc |::|||||||| aaaaucauccUUUUCCAGGUUu 2 13 654 675 [mm9:2:101481155-101481176:-] 0.5413 152 7 -15.98 -0.4423 MIMAT0004324 mmu-miR-181d 19373 Rag1 ugGGUGGCU-GUUGUUACU-UACAa |:| :|| : |:||||| |||| ugCUAGUGAGUCAUAAUGAUAUGUu 2 22 1563 1587 [mm9:2:101480243-101480267:-] 0.6103 128 0 -16.11 -0.5063 MIMAT0004324 mmu-miR-181d 19373 Rag1 uggguggCUGUUGU--UAC-UUACAa |||| || ||| ||||| agguuuaGACACCAGGAUGCAAUGUa 2 17 3241 3266 [mm9:2:101478564-101478589:-] 0.5269 123 0 -14.42 -0.3893 MIMAT0004896 mmu-miR-590-3p 19373 Rag1 ugAUCGAAUA--UGU--AUUUUAAu || :||:| ||| ||||||| gaUACUUUGUAGACAUUUAAAAUUu 2 20 3040 3064 [mm9:2:101478766-101478790:-] 0.5323 153 7 -5.56 -0.5497 MIMAT0004896 mmu-miR-590-3p 19373 Rag1 ugAUCGAAUAUGUAUUUUAAu | | || | |||||||| cuUUGGAUAGA-AUAAAAUUg 2 20 1418 1437 [mm9:2:101480393-101480412:-] 0.6103 149 7 -7.87 -0.1504 MIMAT0004896 mmu-miR-590-3p 19373 Rag1 ugAU-CGAAUAUGUAUUU-UAAu || || |: | ||||| ||| agUAUGCAUGAAAAUAAAGAUUu 2 20 2654 2676 [mm9:2:101479154-101479176:-] 0.6070 122 0 -8.81 -0.1245 MIMAT0004936 mmu-miR-873 19373 Rag1 uccUCUGAGUGUUCAAGGACg | || :||||||||| aauAAACAGCUAAGUUCCUGc 2 19 1948 1968 [mm9:2:101479862-101479882:-] 0.5973 154 7 -18.42 -0.1176 MIMAT0004941 mmu-miR-544 19373 Rag1 cuCGAACGAUUUU--UACGU-CUUa |:|| | ||| ||||| ||| uuGUUUUCACAAAGUAUGCAUGAAa 2 21 2642 2666 [mm9:2:101479164-101479188:-] 0.6070 123 0 -7.35 -0.6326

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G065624 Rag1 Mus musculus 19373

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile Rag1 mmu-miR-16star beg:2039 end:2058 pic:3' AGTCGTCGTGTCAGTTATGACC 5'& ||||||| || ||||||| &5' ---GCAGCACTGTAAATACTG- 3' Rag1 mmu-miR-20astar beg:2304 end:2318 pic:3' GAAATTCACGAGCATTACGTCA 5'& ||| ||||||| &5' -------TGCA---AATGCAG- 3' Rag1 mmu-miR-669g beg:2401 end:2421 pic:3' TAGTACAGTTGTGTATGTTACGT 5'& || .| .||||||||| &5' ----TGGAGAA--GTACAATGCA 3' Rag1 mmu-miR-467e beg:1826 end:1844 pic:3' TGTATATGTACGAGTGTGAATA 5'& |||| | |||||||| &5' ------ACATACACACACTTA- 3' Rag1 mmu-miR-467h beg:1826 end:1844 pic:3' TGTATATGTACGTGTGTGAATA 5'& |||| |||||||||| &5' ------ACATACACACACTTA- 3' Rag1 mmu-miR-142-5p beg:3132 end:3150 pic:3' TCATCACGAAAGATGAAATAC 5'& ||. ||.|||||||| &5' -----TGTATTTTACTTTAT- 3' Rag1 mmu-miR-680 beg:2562 end:2581 pic:3' GGGGGTACAGTC-GTCTACGGG 5'& |||| || |||||||| &5' ----CATG-CACACAGATGCC- 3' Rag1 mmu-miR-155 beg:3345 end:3364 pic:3' TGGGGATAGTGTT-AATCGTAATT 5'& |.|| ||||||||| &5' -------TTACTTTTTAGCATTA- 3' Rag1 mmu-miR-378 beg:989 end:1007 pic:3' GGAAGACTGAGGTTCAGGTCA 5'& |.||| .|||||||| &5' ---TTTGAA--TAAGTCCAG- 3' Rag1 mmu-miR-202-3p beg:2790 end:2808 pic:3' AGAAGGGTACGCGATATGGAGA 5'& || |.| ||||||||| &5' ------CAAGTG-TATACCTCT 3' Rag1 mmu-miR-144 beg:2978 end:2995 pic:3' TCATGTAGTAGATATGACAT 5'& |||.| |||||||| &5' ----CATTAG--ATACTGTA 3' Rag1 mmu-miR-1930 beg:2343 end:2357 pic:3' TGCGACGTCCATGATACCTCCA 5'& ||| ||||||| &5' -------AGGA---ATGGAGG- 3' Rag1 mmu-miR-203 beg:2702 end:2723 pic:3' GATCACCAGGATTTG-TAAAGTG 5'& |||. | |. ||||||| &5' -----GGTTTCATATGATTTCAC 3' Rag1 mmu-miR-203 beg:474 end:498 pic:3' GATCACC----AGGATTTGTAAAGTG 5'& || |..|. ||||||| &5' -----GGACTATTTTGTAAATTTCAC 3' Rag1 mmu-miR-296-3p beg:539 end:556 pic:3' CCTCTCGGAGGTGGGTTGGGAG 5'& .|||.| ||||||| &5' ------TCTCTAA-CAACCCT- 3' Rag1 mmu-miR-33 beg:2406 end:2422 pic:3' ACGTTACGTTGATGTTACGTG 5'& || |||||||||. &5' --------AAGTACAATGCAT 3' Rag1 mmu-miR-128 beg:2475 end:2492 pic:3' TTTCTCTGGCCAAGTGACACT 5'& .||| |||||||. &5' ------GCCGCG-CACTGTGG 3' Rag1 mmu-miR-1927 beg:127 end:145 pic:3' AGTCAGGGATTGTA-GGTCTCCAG 5'& |.| | |||||||| &5' --------TGAGAGGCCAGAGGT- 3' Rag1 mmu-miR-1186 beg:2029 end:2048 pic:3' GTACGGA-AATTAAGGTCGTGAG 5'& |.| ||.. ||||||| &5' ---GTCAGTTGG---CAGCACT- 3' Rag1 mmu-miR-370 beg:2386 end:2402 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& | |||||||||| &5' --------CTGCCCCAGCAGG- 3' Rag1 mmu-miR-200b beg:678 end:693 pic:3' AGTAGTAATGGTCCGTCATAAT 5'& .|| |||||||. &5' --------GCCT--CAGTATTG 3' Rag1 mmu-miR-200c beg:678 end:693 pic:3' AGGTAGTAATGGGCCGTCATAAT 5'& .||. |||||||. &5' ---------GCCT--CAGTATTG 3' Rag1 mmu-miR-429 beg:678 end:693 pic:3' TGCCGTAATGGTCTGTCATAAT 5'& .|| |||||||. &5' --------GCCT--CAGTATTG 3' Rag1 mmu-miR-30bstar beg:1904 end:1921 pic:3' CTGCATTTGTAGGT--GTAGGGTC 5'& .||| ||||||| &5' ---------GTCCTTTCATCCCA- 3' Rag1 mmu-miR-490 beg:661 end:675 pic:3' GTCGTACCTCAGGAGGTCCAAC 5'& |..|||||||| &5' ----------TTTTCCAGGTT- 3' Rag1 mmu-miR-2134 beg:1365 end:1376 pic:3' CGTGGGGCAAAGGGTTCTG 5'& |||||||| &5' ----------TCCCAAGA- 3' Rag1 mmu-miR-92astar beg:2366 end:2382 pic:3' CATTACGGTGGTTAGGGGTGGA 5'& ||||. ||||||| &5' ------CCACTC--CCCCACC- 3' Rag1 mmu-miR-488 beg:1897 end:1916 pic:3' CTGGTTCTTTGTC-GGAAAGTT 5'& |||| ||| ||||||| &5' -ACCAC----CAGTCCTTTCA- 3' Rag1 mmu-miR-432 beg:1435 end:1454 pic:3' GACGGGTGACTAGAT--GAGGTTCT 5'& |.|| |||||||. &5' ---------GGTCAAACCTCCAAGG 3' Rag1 mmu-miR-1898 beg:2249 end:2266 pic:3' CTAGGGGACACTTG-GAACTGGA 5'& ||| || ||||||| &5' ------CTGC--ACACTTGACC- 3' Rag1 mmu-miR-291a-5p beg:1602 end:1617 pic:3' TCTCTCCCGGAGGTGAAACTAC 5'& .||.| ||||||| &5' --------TCTTC-CTTTGAT- 3' Rag1 mmu-miR-291b-5p beg:1602 end:1618 pic:3' CCTCTCCCGGAGGTGAAACTAG 5'& .||.| |||||||. &5' --------TCTTC-CTTTGATT 3' Rag1 mmu-miR-1950 beg:1750 end:1769 pic:3' ACTGGTATAGGAATCTACGTCT 5'& |.|| |||||||| &5' ---CTATTGAA--AGATGCAG- 3' Rag1 mmu-miR-129-5p beg:1675 end:1694 pic:3' CGTTCGGGTCTGGCGTTTTTC 5'& |.| || .||||||| &5' ----GTCAAGTGTGCAAAAA- 3' Rag1 mmu-miR-1934 beg:2480 end:2499 pic:3' TCTCCTGCTTCGT----CCCCTGGTCT 5'& ||| ||||||||| &5' ----------GCACTGTGGGGACCAG- 3' Rag1 mmu-miR-1934 beg:263 end:282 pic:3' TCTCCTGCTTCGTCCCCTGGTCT 5'& | ||||||||||||. &5' -------GCTGCAGGGGACCAGG 3' Rag1 mmu-miR-207 beg:2393 end:2413 pic:3' CTCCCTCCTCTCGGTCCTCTTCG 5'& || ||.||. |||||||. &5' -----AGCAGGGCT-GGAGAAGT 3' Rag1 mmu-miR-3471 beg:1 end:11 pic:3' TTACGGAATGTCAACCTAGAGT 5'& ||||||| &5' --------------GGATCTC- 3' Rag1 mmu-miR-455star beg:1701 end:1718 pic:3' GCTACATCAGGTTT-CCGTGTAT 5'& |.||| |||||||. &5' ---------CTAAATGGCACATG 3' Rag1 mmu-miR-455star beg:2313 end:2325 pic:3' GCTACATCAGGTTTCCGTGTAT 5'& ||||||||| &5' -------------AGGCACATA 3' Rag1 mmu-miR-3472 beg:2216 end:2232 pic:3' CCAAGGAAGGTCGAAGACCGATAAT 5'& || |||||||| &5' -----------GCCTATGGCTATT- 3' Rag1 mmu-miR-500 beg:1711 end:1728 pic:3' ACTTGGGAACGGGTCCACGTAA 5'& | ||... ||||||| &5' ------CATGTTT-GGTGCAT- 3' Rag1 mmu-miR-501-3p beg:1711 end:1728 pic:3' GTTTAGGAACGGGCCCACGTAA 5'& | ||... ||||||| &5' ------CATGTTT-GGTGCAT- 3' Rag1 mmu-miR-3471 beg:2188 end:2205 pic:3' TTACGGAATGTCAACCTAGAGT 5'& ||| ||| ||||.||| &5' ---GCC--ACA---GGATTTCA 3' Rag1 mmu-miR-3471 beg:2833 end:2856 pic:3' TTACGGAATGTCAAC-CTAGAGT 5'& |..|| || |.||||| &5' ---GTTTTTGAGCTAAGGTCTCA 3' Rag1 mmu-miR-3471 beg:3355 end:3376 pic:3' TTACGGAATGTCAACCTAGAGT 5'& || |||. || |||.||| &5' ---GCATTATGATT-GATTTCA 3' Rag1 mmu-miR-3471 beg:574 end:596 pic:3' TTACGGAATGTCAACCTAGAGT 5'& ||||| |||||||| &5' ---GCCTTTCCAAGGGATCTCA 3' Rag1 mmu-miR-203 beg:715 end:738 pic:3' GATCACCAGGATTTGTAAAGTG 5'& ||.|| ||| ||||. ||||| &5' CTGGT-GTCATAAATTTTTCA- 3' Rag1 mmu-miR-1936 beg:2021 end:2039 pic:3' CGGTCAAGTGTCGTCCAGTCAAT 5'& | |.|. |||||||. &5' -------CTCGGTTAGTCAGTTG 3' Rag1 mmu-miR-411 beg:1126 end:1140 pic:3' GCATGCGATATGCCAGATGAT 5'& ||. |||||||| &5' --------ATGGGGTCTACT- 3' Rag1 mmu-miR-411 beg:3211 end:3225 pic:3' GCATGCGATATGC-CAGATGAT 5'& ||| ||||||| &5' ----------ACGAGTCTACT- 3' Rag1 mmu-miR-183 beg:303 end:323 pic:3' TCACTTAAGATGGT----CACGGTAT 5'& |.||| |||||||. &5' ---------TGCCACTGTGTGCCATG 3' Rag1 mmu-miR-425 beg:709 end:728 pic:3' AGTTGCCCTCAC-TAG--CACAGTAA 5'& ||| ||| ||||||| &5' -------GAGGTCATCTGGTGTCAT- 3' Rag1 mmu-miR-489 beg:710 end:728 pic:3' CGACGGTATATACACCACAGTAA 5'& |.||| ||||||||| &5' ---GTCATC----TGGTGTCAT- 3' Rag1 mmu-miR-873 beg:1953 end:1969 pic:3' TCCTCTGAGTG-TTCAAGGACG 5'& .| |||||||||| &5' ---------GCTAAGTTCCTGC 3' Rag1 mmu-miR-302astar beg:3385 end:3413 pic:3' CGTTCATG----TTGGTG-CAAATTCA 5'& .|||||. ||. ||||||| &5' -TAAGTATTTGGAATAAAAGTTTAAG- 3' Rag1 mcmv-miR-m107-1-5p beg:2488 end:2505 pic:3' CCACTGAGCTCTGCTCACTGGC 5'& |.||| ||||||.| &5' --------GGGACCAGTGACTG 3' Rag1 mcmv-miR-m107-1-5p beg:564 end:580 pic:3' CCACTGAGCTCTGC-TCACTGGC 5'& .|||| .|||.|| &5' ---------GGACGTGGTGGCC- 3' Rag1 mcmv-miR-m108-1 beg:639 end:657 pic:3' GCTGTGCTCGGTGGCAGTCTTT 5'& ||| . . ||||||| &5' ------GAGA-GGTTTCAGAAA 3' Rag1 mcmv-miR-m21-1 beg:2136 end:2146 pic:3' GCCGAACTTGCACAGGGGATA 5'& ||||||. &5' -------------TCCCCTG- 3' Rag1 mcmv-miR-M23-2 beg:2365 end:2380 pic:3' GGCGAACTGGCTCCGGGGGTA 5'& || |||||| &5' --------CCCACTCCCCCA- 3' Rag1 mcmv-miR-M23-2 beg:0 end:13 pic:3' GGCGAACTGGCTCC-GGGGGTA 5'& ||| .|.||| &5' -----------AGGATCTCCA- 3' Rag1 mghv-miR-M1-6 beg:673 end:696 pic:3' TTTTGGTGGAGT-GTGTCAAAGT 5'& |||. .||||| .|. ||| &5' -AAATGGCCTCAGTATTG--TCA 3' Rag1 mmu-miR-101astar beg:1320 end:1340 pic:3' CGTAGTCGTGACACTATTGACT 5'& ||||| ||||.||. &5' ----CAGCAGAAC-ATAATTGG 3' Rag1 mmu-miR-101b beg:1085 end:1106 pic:3' AAGTCGATAGTGTCATGACAT 5'& .||| | || ||.||||. &5' --TAGC-AGGACTGTGCTGTG 3' Rag1 mmu-miR-106a beg:3341 end:3366 pic:3' GATGGACGTGAC-AATCGTGAAAC 5'& ||..| .||| ||||||.| || &5' -TATTT-TACTTTTTAGCATTATG 3' Rag1 mmu-miR-106bstar beg:1055 end:1076 pic:3' CGTC-GTTCATGGGTGTCACGCC 5'& ||| ..||| |||||.| &5' -CAGTTGAGTTT---CAGTGTG- 3' Rag1 mmu-miR-106bstar beg:2230 end:2249 pic:3' CGTCGTTCAT-GGGTGTCACGCC 5'& || ||| |||||.|| &5' -------GTTTCCCTCAGTGTGG 3' Rag1 mmu-miR-1186b beg:1357 end:1373 pic:3' CACCACGTACGGAAATTAGGGT 5'& |..| |||||||| &5' ---------GTTTATAATCCCA 3' Rag1 mmu-miR-1186b beg:1911 end:1930 pic:3' CACCACGTACGG-AAATTAGGGT 5'& ||| || ||||||||. &5' ------CATCCCATTTAATCCT- 3' Rag1 mmu-miR-1186b beg:871 end:907 pic:3' CACCACGTACGGAA--ATTAGGGT 5'& |||| .|| |||||.|| &5' ---GTGCTTTTCTATGTAATCTCA 3' Rag1 mmu-miR-1193 beg:561 end:581 pic:3' CTATCATTTTGC-CCACTGGAT 5'& |||..||| ||||.||| &5' ----GTAGGACGTGGTGGCCT- 3' Rag1 mmu-miR-1195 beg:1496 end:1515 pic:3' ACTCGTCCGACCGGAG--CTTGAGT 5'& || |||. |||.||| &5' ---------TGTCCTTAGGAATTCA 3' Rag1 mmu-miR-1196 beg:1718 end:1739 pic:3' TC-CGTCTCCGTCCATCTAAA 5'& .| ||| ||||||| |||| &5' GGTGCATAGGCAGG--GATT- 3' Rag1 mmu-miR-1198 beg:1781 end:1800 pic:3' GGTTCGGTCGGTCCTTGTGTAT 5'& .| || |||.||||| &5' -----TCTGCATGGAGCACAT- 3' Rag1 mmu-miR-125a-5p beg:146 end:164 pic:3' AGTGT-CCAATTTCCCAGAGTCCCT 5'& |||| || ||||||| &5' TCACCTGG----------TCAGGGA 3' Rag1 mmu-miR-127star beg:1052 end:1072 pic:3' TAGTCTCGGGAGACTCGAAGTC 5'& || .| .||||.||||| &5' ----GA-TCAGTTGAGTTTCAG 3' Rag1 mmu-miR-130b beg:593 end:616 pic:3' TACGGGAAAGTAGTAACG-TGAC 5'& .||| .|||| ||.|||| || &5' GTGCATTTTC-TCGTTGCTAC-- 3' Rag1 mmu-miR-132 beg:2492 end:2511 pic:3' GCTGGT-ACCGACATCTGACAAT 5'& ||||| || |||||| ||| &5' -GACCAGTGACTGTAG-CTG--- 3' Rag1 mmu-miR-133a beg:261 end:282 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& .||||| |||||||||.. &5' TAGCTGC----AGGGGACCAGG 3' Rag1 mmu-miR-133a beg:2478 end:2499 pic:3' GTCGACCAACTTCCCCTGGTTT 5'& || || ||||||||. &5' --GCGCACTGT-GGGGACCAG- 3' Rag1 mmu-miR-133b beg:2478 end:2499 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& || || ||||||||. &5' --GCGCACTGT-GGGGACCAG- 3' Rag1 mmu-miR-133b beg:261 end:282 pic:3' ATCGACCAACTTCCCCTGGTTT 5'& |||||| |||||||||.. &5' TAGCTGC----AGGGGACCAGG 3' Rag1 mmu-miR-135astar beg:536 end:559 pic:3' GCGGTGCC---GAGGTTA--GGGATAT 5'& || |||.|| ||||.|| &5' ------GGTTTCTCTAACAACCCTGTA 3' Rag1 mmu-miR-135b beg:1383 end:1403 pic:3' AGTGTATCCTTACTTTTCGGTAT 5'& |.||.|||.||||.||| &5' -----TGGGGATGGAAAGTCAT- 3' Rag1 mmu-miR-136 beg:2335 end:2356 pic:3' GGTAGTAGTTTTGTTTACCTCA 5'& ||| || || .||||||| &5' ---TCACCACAAGGAATGGAG- 3' Rag1 mmu-miR-138 beg:2882 end:2902 pic:3' GCCGGACTAAGT-GTTGTGGTCGA 5'& || || |||..||||| &5' ------GACTCTCCAATGCCAGC- 3' Rag1 mmu-miR-139-5p beg:3034 end:3053 pic:3' GACCTCTGTGCACGTGACATCT 5'& | ||.|| .|||||| &5' --GTTGATACT----TTGTAGA 3' Rag1 mmu-miR-139-5p beg:2486 end:2508 pic:3' GACCTCTGTGCACGTGACATCT 5'& |||.||| ||| ||||||| &5' -TGGGGACCAGTG-ACTGTAG- 3' Rag1 mmu-miR-1 beg:3173 end:3200 pic:3' TATGTATGAAGAA----ATGTAAGGT 5'& ||||||. |. ||||||.. &5' -TACATATATTGAATGATACATTTT- 3' Rag1 mmu-miR-1 beg:3340 end:3363 pic:3' TATGT-ATGAAGAAATGTAAGGT 5'& |||. |||||.|| .|||| &5' ATATTTTACTTTTTAGCATT--- 3' Rag1 mmu-miR-145 beg:2422 end:2444 pic:3' TCCCTAAGGACCC--TTTTGACCTG 5'& ||.||| .|||||||| &5' -----TTTCTGCTCTGAAACTGGA- 3' Rag1 mmu-miR-145star beg:348 end:369 pic:3' GTTCTTGTCATAAAGGTCCTTA 5'& | || |.||||| &5' ---GGCCAAGCATGCTAGGAA- 3' Rag1 mmu-miR-146b beg:1262 end:1293 pic:3' TCGGATACC-----TTAAG--TCAAGAGT 5'& ||||| .|||| .|||||. &5' AGCCTTAGTTTCTTGATTCTGGGTTCTT- 3' Rag1 mmu-miR-150 beg:3104 end:3122 pic:3' GTGACCATGTTCCCAACCCTCT 5'& |. | |||||||| &5' -------ATTTGTTTTGGGAGA 3' Rag1 mmu-miR-15astar beg:561 end:581 pic:3' ACTCCGTCGTGTCATACCGGAC 5'& |.|| ||. .|||||| &5' ----GTAGGACGTGGTGGCCT- 3' Rag1 mmu-miR-16star beg:1314 end:1340 pic:3' AGTCGTCGT-GTCA-GTTATGACC 5'& |||.|||| ||| || |.||| &5' -CAGTAGCAGCAGAACATAATTGG 3' Rag1 mmu-miR-17 beg:1985 end:2003 pic:3' GATGGACGTGACATTCGTGAAAC 5'& |||. .||.|||| &5' ------GCATGCT-GGCGCTTT- 3' Rag1 mmu-miR-17star beg:1461 end:1482 pic:3' GATGTTCACGGGAG-----TGACGTCA 5'& ||||| .||||||| &5' ---------CCCTCTAGTGGCTGCAGT 3' Rag1 mmu-miR-183 beg:707 end:729 pic:3' TCACTTAAGATGGTCACGGTAT 5'& ||. || | |||.|||| &5' ---GAGGTCATCTGGTGTCATA 3' Rag1 mmu-miR-185 beg:2587 end:2611 pic:3' AGTCCTTG--ACGGAAAGAGAGGT 5'& .|||| ||.|||||||||. &5' --GGGAAAGATGTCTTTCTCTCT- 3' Rag1 mmu-miR-188-3p beg:2476 end:2494 pic:3' ACGTTTGGGA-CGT-ACACCCTC 5'& || ||| ||||||. &5' -------CCGCGCACTGTGGGG- 3' Rag1 mmu-miR-188-3p beg:3114 end:3134 pic:3' ACGTTTGGGACGTACACCCTC 5'& | |.|. ||||||. &5' -GGAGATATTT--TGTGGGG- 3' Rag1 mmu-miR-188-5p beg:98 end:119 pic:3' GGGA-GGTGGTACGTTCCCTAC 5'& |.| .|||| ||||||.|| &5' -CTTATCACC---CAAGGGGTG 3' Rag1 mmu-miR-188-5p beg:572 end:592 pic:3' GGGAGGTGGTAC-GTTCCCTAC 5'& . .|| |||||||| &5' ----TGGCCTTTCCAAGGGAT- 3' Rag1 mmu-miR-1892 beg:2131 end:2153 pic:3' TAGGAGGGAGGGC--AGGGGTTTA 5'& |||||.|| ||.| ||.|| &5' ATCCTTCC-CCTGACTCTCC---- 3' Rag1 mmu-miR-1894-5p beg:3233 end:3244 pic:3' TCTCCGTCCACCATCCCCTCTC 5'& |||||||. &5' -------------AGGGGAGG- 3' Rag1 mmu-miR-18a beg:2408 end:2425 pic:3' GATAGACGTGATCTACGTGGAAT 5'& |.|| |||||..|| &5' ------GTACA--ATGCATTTT- 3' Rag1 mmu-miR-18a beg:587 end:605 pic:3' GATAGACGTGATCTACGTGGAAT 5'& |||| || .||||..|| &5' --ATCT-CA----GTGCATTTT- 3' Rag1 mmu-miR-18b beg:2407 end:2425 pic:3' GATTGTCGTGATCTACGTGGAAT 5'& ||.|| |||||..|| &5' -----AGTACA--ATGCATTTT- 3' Rag1 mmu-miR-1904 beg:1308 end:1332 pic:3' GGAGGGAGGTC-TCCTCGTCTTG 5'& ||. ||| || |||||||| &5' --TCTATACAGTAGCAGCAGAAC 3' Rag1 mmu-miR-1936 beg:212 end:235 pic:3' CGGTCAAGTGTCGTCC-----AGTCAAT 5'& .|| |||| ||||||| &5' --------GCAACAGGAGAAATCAGTTA 3' Rag1 mmu-miR-1937a beg:2903 end:2919 pic:3' ACCCCCGAGCAGGCCCTAA 5'& |||. |.||||| &5' ---GGGTAA--CTGGGAT- 3' Rag1 mmu-miR-1941-3p beg:3114 end:3137 pic:3' TACCCTCTATG--ACGATTCTAC 5'& |||||||||. ||. .| || &5' -TGGGAGATATTTTGTGGGGTTG 3' Rag1 mmu-miR-1941-3p beg:2073 end:2087 pic:3' TACCCTCTATGACGATTCTAC 5'& .|||||.|||| &5' ----------TTGCTAGGATG 3' Rag1 mmu-miR-1944 beg:2711 end:2728 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& |||. |||| |||||| &5' ----------TGAT-TTCA-CACAGA- 3' Rag1 mmu-miR-1944 beg:270 end:293 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& .|.|| |. || |||||||| &5' ----GGGACCAGGGAT---GCACAGAG 3' Rag1 mmu-miR-1944 beg:1777 end:1799 pic:3' TTAGTCTTGAACTGTAAGTCGTGTCTC 5'& ||| | ||| |||..||| &5' ---------TTG-CTTTCTGCATGGAG 3' Rag1 mmu-miR-1948 beg:1093 end:1115 pic:3' GACATGCTCACGAGACGGATTT 5'& ||||.| |||||.| .||| &5' CTGTGCT-GTGCTTTTTCTA-- 3' Rag1 mmu-miR-1953 beg:2995 end:3018 pic:3' GTCTTCGGACTCTTGAAAGGGT 5'& ||| |.. || .|||||.| &5' CAGTTGTTCTAG--TTTTCCTA 3' Rag1 mmu-miR-1957 beg:296 end:314 pic:3' CAGTATACGAGATGGTGAC 5'& .|.||| |.|||||| &5' ---GTGTGCA-TGCCACTG 3' Rag1 mmu-miR-1957 beg:2706 end:2725 pic:3' CAGTATACGAGATGGTGAC 5'& ||||||| |.| ||| &5' -TCATATGATTTCACAC-- 3' Rag1 mmu-miR-1958 beg:1761 end:1779 pic:3' TGAATGACGAAGGTGAAAGGAT 5'& ||| |||.||||.| &5' ------TGCAGCCATTTTCTT- 3' Rag1 mmu-miR-1959 beg:2800 end:2820 pic:3' GAGGTGACTCGATGTAGGGG 5'& || ||||| |.||.|| &5' --CCTCTGAGGAATATTCC- 3' Rag1 mmu-miR-1960 beg:2028 end:2049 pic:3' TCGGGAGAAGATTGTCGTGACC 5'& ||.| .|..|||||||| &5' AGTCAG---TTGGCAGCACTG- 3' Rag1 mmu-miR-1962 beg:2456 end:2476 pic:3' TACACAGGGTCACGGTCGGAGA 5'& |||. ||||||||||. &5' ----GTCTACGTGCCAGCCTT- 3' Rag1 mmu-miR-1962 beg:2885 end:2906 pic:3' TACACAG-GGTCACGGTCGGAGA 5'& || ||| |||||||||.| &5' -----TCTCCAATGCCAGCCTTT 3' Rag1 mmu-miR-196a beg:760 end:780 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& ..|.| ||| .||||||| &5' -TTAGCTACA----GCTACCTA 3' Rag1 mmu-miR-196b beg:760 end:780 pic:3' GGGTTGTTGTCCTTTGATGGAT 5'& ..|.| |||| ||||||| &5' -TTAGCTACAG----CTACCTA 3' Rag1 mmu-miR-1971 beg:2457 end:2476 pic:3' AGAGTCG-GGTCGGAAATG 5'& ||| |. |||||||| &5' TCTACGTGCCAGCCTT--- 3' Rag1 mmu-miR-1971 beg:2885 end:2907 pic:3' AGAGT---CGGGTCGGAAATG 5'& |||| | |||||||||. &5' TCTCCAATG-CCAGCCTTTG- 3' Rag1 mmu-miR-1982.1 beg:2517 end:2538 pic:3' GACACCCT-CTTGTATCCCACTCT 5'& || |||. |||||||| &5' ------GATGAATGGTGGGTGAGA 3' Rag1 mmu-miR-1982star beg:2134 end:2156 pic:3' GGAGGGGTCCTGGGAGGGTT 5'& |.||||| |||.||||.|| &5' CTTCCCCT-GACTCTCCTAA 3' Rag1 mmu-miR-1983 beg:2604 end:2617 pic:3' TCTTTTGTACGAG-GTCCACTC 5'& ||| ||||||. &5' ----------CTCTCAGGTGG- 3' Rag1 mmu-miR-19astar beg:1473 end:1495 pic:3' CATCACGTTGATACG-TTTTGAT 5'& |||| ||| .|||||| &5' ----TGCAGTTATTTGGAAACTA 3' Rag1 mmu-miR-19b beg:2767 end:2785 pic:3' AGTCAAAACGTACCTA-AACGTGT 5'& || ||.| ||||||| &5' --------GCCAGGGTCTTGCACA 3' Rag1 mmu-miR-205 beg:2338 end:2358 pic:3' GTCTGAGGCCA-CCTTACTTCCT 5'& || ||||||.|||| &5' ------CCACAAGGAATGGAGGA 3' Rag1 mmu-miR-20a beg:1985 end:2003 pic:3' GATGGACGTGATATTCGTGAAAT 5'& |||. .||.|||| &5' ------GCATGCT-GGCGCTTT- 3' Rag1 mmu-miR-20b beg:1985 end:2003 pic:3' GATGGACGTGATACTCGTGAAAC 5'& |||. || ||.|||| &5' ------GCATGCTG-GCGCTTT- 3' Rag1 mmu-miR-20bstar beg:1467 end:1482 pic:3' GATCTTCACGAGTGTGACGTCA 5'& |||| .||||||| &5' -----AGTG-----GCTGCAGT 3' Rag1 mmu-miR-20bstar beg:2489 end:2508 pic:3' GATCT--TCACGAGTGTGACGTCA 5'& .|| |||| ||||.|| &5' --GGACCAGTG-----ACTGTAG- 3' Rag1 mmu-miR-20bstar beg:251 end:273 pic:3' GATCTTCACGAGTGTGACGTCA 5'& |.||. || .|||||| &5' -TGGAGCAGCGGTAGCTGCAG- 3' Rag1 mmu-miR-2139 beg:3243 end:3269 pic:3' CGTCAATGGTCCT-CGTCGCGTCGA 5'& .|| ||||||| ||| .|.| || &5' -TAGACACCAGGATGCAATGTA-CT 3' Rag1 mmu-miR-2140 beg:1897 end:1918 pic:3' TGGTGGTTCT-AGACGTGGA 5'& |||||||. |.| ||.| &5' ACCACCAGTCCTTT-CATC- 3' Rag1 mmu-miR-2146 beg:2874 end:2894 pic:3' GTGTACCTTGGGA----AGAGGTG 5'& |||... |||||| &5' ------GAATTTGAGACTCTCCA- 3' Rag1 mmu-miR-2146 beg:524 end:548 pic:3' GTGTACCTTGGG-------AAGAGGTG 5'& |||.||. |||||.| &5' -----GGAGCCTTTGAGGTTTCTCTA- 3' Rag1 mmu-miR-214star beg:2301 end:2321 pic:3' CGTGTCGTTCACATCTGTCCGT 5'& ||. |||| .|||||| &5' -CATTGCAAAT----GCAGGCA 3' Rag1 mmu-miR-216a beg:165 end:188 pic:3' AGTGTCAACGG-TCGACTCTAAT 5'& |.||||| || |||||||. &5' --ATAGTTGACAAGATGAGATTG 3' Rag1 mmu-miR-218 beg:1784 end:1799 pic:3' TGTACCAATCTAGTTCGTGTT 5'& .||||| |||||| &5' GCATGG--------AGCACA- 3' Rag1 mmu-miR-218 beg:2312 end:2323 pic:3' TGTACCAATCTAGTTCGTGTT 5'& ||.||||| &5' ------------CAGGCACA- 3' Rag1 mmu-miR-218 beg:2394 end:2417 pic:3' TGTACCAATCTAGTTCGTGTT 5'& .|| || |.|| |||.|||| &5' GCAGGGCTGGAG-AAGTACAA 3' Rag1 mmu-miR-218 beg:2114 end:2135 pic:3' TGTACCAAT-CTAGT--TCGTGTT 5'& ||| |||. |||||| &5' ---TGGGCTTGATTTATAGCACA- 3' Rag1 mmu-miR-218-1star beg:3278 end:3299 pic:3' CCACGAACTGCCTT----GGTACAAA 5'& ||| ||||||| &5' -------GACCTATATTTCCATGTT- 3' Rag1 mmu-miR-2183 beg:2677 end:2699 pic:3' TCCTCCAGT-CCCCAAGTT 5'& .||.|| . |||||| || &5' GGGGGGGAGTGGGGTTGAA 3' Rag1 mmu-miR-2183 beg:2609 end:2630 pic:3' TCCTCCAGTCCCCAAGTT 5'& ||| || |||| ||.|| &5' AGGTGGACAGGAATTTAA 3' Rag1 mmu-miR-219 beg:1220 end:1239 pic:3' TCTTAACGCAAA---CCTGTTAGT 5'& ||| |||.||||| &5' --------GTTACAGGGATAATCA 3' Rag1 mmu-miR-219 beg:2078 end:2098 pic:3' TCTTAACGCAAACCTGTTAGT 5'& ||.|| |. |||||||| &5' AGGATGGTA---GGACAATC- 3' Rag1 mmu-miR-220 beg:1282 end:1302 pic:3' TTCACAGAC-TGTGACACCACC 5'& ..|| ||| |.|||||| &5' GGGT-TCTTTATACTGTG---- 3' Rag1 mmu-miR-22 beg:2987 end:3003 pic:3' TGTCAAGAAGTTGACCGTCGAA 5'& || ||||||.| &5' ------CTGTA--TGGCAGTT- 3' Rag1 mmu-miR-22star beg:3300 end:3321 pic:3' ATTTCGAACGGTGA--CTTCTTGA 5'& |.|| .|| ||||||| &5' ----GTTT-TCAAATGGAAGAAC- 3' Rag1 mmu-miR-23a beg:2233 end:2249 pic:3' CCTTTAGGGACCGTTACACTA 5'& ||||| ||.||||. &5' -----TCCCT--CAGTGTGG- 3' Rag1 mmu-miR-24 beg:177 end:196 pic:3' GACAAGGACGACTTGACTCGGT 5'& || .||| ||||||| &5' -TGAGATTGC----CTGAGCC- 3' Rag1 mmu-miR-24 beg:1558 end:1576 pic:3' GACAAGGACGACTTGACTCGGT 5'& ..|||| | ||||.|| &5' -----TTTGCT--AGTGAGTCA 3' Rag1 mmu-miR-24-2star beg:1713 end:1733 pic:3' TGACAAAGTCGAGTCATCCGTG 5'& ||||| .|. || |||||| &5' --TGTTT-GGTGCA-TAGGCA- 3' Rag1 mmu-miR-27bstar beg:1941 end:1965 pic:3' CAAGTGGTTA---GTCGATTCGAGA 5'& |||.||| ||||||||.|| &5' ---CACTAATAAACAGCTAAGTTC- 3' Rag1 mmu-miR-290-3p beg:1982 end:2003 pic:3' CCCGAATTTTGATCCG-CCGTGAAA 5'& |..|.| || |||.|||| &5' -----TGGAGCAT-GCTGGCGCTTT 3' Rag1 mmu-miR-294 beg:2089 end:2110 pic:3' TGTGTGTTTTCC-CTTCGTGAAA 5'& |||| ||||||.|| &5' ----ACAATCTCAGAAGCATTT- 3' Rag1 mmu-miR-295star beg:2864 end:2886 pic:3' CTTCACAC-GGGGTGTAAACTCA 5'& || || ||... ||||||| &5' --AGGCTGACCTTGAATTTGAG- 3' Rag1 mmu-miR-295star beg:3260 end:3281 pic:3' CTTCACACGGGGTG---TAAACTCA 5'& || |.|. ||||||| &5' ------TGTACTATTTGATTTGAG- 3' Rag1 mmu-miR-29astar beg:210 end:233 pic:3' GACTTGTGGTTTTCTTTAGTCA 5'& ||.|| ||..|||||||||| &5' --GAGCAACAGGAGAAATCAGT 3' Rag1 mmu-miR-29bstar beg:1457 end:1482 pic:3' ATTTGGT-GGTATACTTTGGTCG 5'& |||||| |.| .||. |||. &5' TAAACCCTCTA-GTGGCTGCAGT 3' Rag1 mmu-miR-302a beg:2090 end:2111 pic:3' AGTGGTTTT-GTACCTTCGTGAAT 5'& ||| || ||||||.||. &5' ----CAATCTCA--GAAGCATTTG 3' Rag1 mmu-miR-302b beg:2098 end:2111 pic:3' GATGATTTTGTACCTTCGTGAAT 5'& ||||||.||. &5' -------------GAAGCATTTG 3' Rag1 mmu-miR-302d beg:2089 end:2111 pic:3' TGT--GAGTTTGTACCTTCGTGAAT 5'& ||| |||| ||||||.||. &5' ACAATCTCA------GAAGCATTTG 3' Rag1 mmu-miR-30b beg:1163 end:1181 pic:3' TCGACTCACATCCTACAAATGT 5'& ||||| ||||||. &5' ------GTGTACATTGTTTAT- 3' Rag1 mmu-miR-30c beg:1163 end:1181 pic:3' CGACTCTCACATCCTACAAATGT 5'& ||||| ||||||. &5' -------GTGTACATTGTTTAT- 3' Rag1 mmu-miR-30estar beg:1743 end:1763 pic:3' CGACATTTGTAGGCTGACTTTC 5'& ||. ||. |.|||||| &5' ---GTGCTT-TCT-ATTGAAAG 3' Rag1 mmu-miR-31star beg:369 end:391 pic:3' CTACCGTTATACAA---CCGTATCGT 5'& ||| ||| |||||.|. &5' ------AATTTGTCTTGGGCATGGT- 3' Rag1 mmu-miR-31star beg:2114 end:2133 pic:3' CTACCGTTATACAACCGTATCGT 5'& ||| || .|||||| &5' ---GGCT---TGATT-TATAGCA 3' Rag1 mmu-miR-31star beg:2991 end:3011 pic:3' CTACCGTTATACAACCGTATCGT 5'& ||||||.| |||| |||. &5' -ATGGCAGT-TGTTC---TAGT- 3' Rag1 mmu-miR-323-3p beg:2532 end:2555 pic:3' TCTCCAG--CTGGCACATTACAC 5'& ||||||. || |||| || &5' AGAGGTTAAGAA-GTGTCTTG-- 3' Rag1 mmu-miR-335-5p beg:1034 end:1051 pic:3' TGTAAAAAGCAATAACGAGAACT 5'& .|||||| ||.|||| &5' --------TGTTATT-CTTTTGA 3' Rag1 mmu-miR-339-3p beg:1980 end:2002 pic:3' GCCGAGACAGCGGCT--CCGCGAGT 5'& ||| || ||||||. &5' -----CTGGAGCATGCTGGCGCTT- 3' Rag1 mmu-miR-339-5p beg:1715 end:1737 pic:3' GCACTCGAGGACCTC----CTGTCCCT 5'& ..||| | |.|||||| &5' --------TTTGGTGCATAGGCAGGGA 3' Rag1 mmu-miR-339-5p beg:1212 end:1233 pic:3' GCACTCGAGGACC-TCC-TGTCCCT 5'& ||| || ||||||| &5' -------TCCCCAAAGTTACAGGGA 3' Rag1 mmu-miR-33star beg:3036 end:3057 pic:3' CACTAC-GTGACACCTTTGTAAC 5'& | || .||| || |.||||| &5' --GTTGATACTTTGTAGACATT- 3' Rag1 mmu-miR-340-5p beg:1647 end:1671 pic:3' TTAGTCAG--AGTAA--CGAAATATT 5'& |||| ||| |||||.||| &5' ---CAGTATATCAAAGAGCTTTGTAA 3' Rag1 mmu-miR-343 beg:2672 end:2689 pic:3' AGACCCGTGTACTTCCCTCT 5'& |.|||| |..||||| &5' TTTGGG-----GGGGGGAG- 3' Rag1 mmu-miR-346 beg:2745 end:2767 pic:3' TCTCCGTCCGTGAGCCCGTCTGT 5'& .|||||||| |.|| .||| &5' GGAGGCAGGA--TTGGA-GGAC- 3' Rag1 mmu-miR-3471 beg:1188 end:1206 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |||. ||||||.|. &5' ------TTATTTTTGGATTTT- 3' Rag1 mmu-miR-3471 beg:82 end:105 pic:3' TTACGGAATGTCAACCTAGAGT 5'& |||| |. | |||.|||.| &5' --TGCCATGTGGGTGGGTCTTA 3' Rag1 mmu-miR-3473 beg:2593 end:2611 pic:3' CCGACT-CGGT-AGAGAGGT 5'& || |.| ||||||. &5' ----GATGTCTTTCTCTCT- 3' Rag1 mmu-miR-3474 beg:2596 end:2615 pic:3' CTTAGGTGCAGAG---GAGGGTCCC 5'& |.||||. |||.|||| &5' ------ATGTCTTTCTCTCTCAGG- 3' Rag1 mmu-miR-34a beg:910 end:931 pic:3' TGTTGGTCGATTCT-GTGACGGT 5'& ||| .|||||| &5' ----CCACATTTTCTTACTGCC- 3' Rag1 mmu-miR-34c beg:2041 end:2060 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& || ||. |.|||||| &5' -----CA-CTGTAAATACTGCC- 3' Rag1 mmu-miR-34c beg:913 end:931 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& || .| || .|||||| &5' -----CA-TTTTCT-TACTGCC- 3' Rag1 mmu-miR-351 beg:142 end:164 pic:3' GTCCGAGTTTCCCGAGGAGTCCCT 5'& ||| || ||||||| &5' ---GCTGTCAC--CTGGTCAGGGA 3' Rag1 mmu-miR-361 beg:2495 end:2515 pic:3' CATGGGGACCTCTAAGACTATT 5'& ||. ||| || |||||.| &5' GTGA--CTGTAG---CTGATGA 3' Rag1 mmu-miR-361 beg:706 end:724 pic:3' CATGGGGACCTCTA--AGACTATT 5'& ||||.| ||||.|. &5' --------GGAGGTCATCTGGTG- 3' Rag1 mmu-miR-362-5p beg:1212 end:1234 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& || | || ||| ||.|||| &5' --TC-C-CCAAAGTTACAGGGAT- 3' Rag1 mmu-miR-362-5p beg:1717 end:1739 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& || . | |||| ||.||||| &5' -TTGGTGCATAGG---CAGGGATT 3' Rag1 mmu-miR-362-5p beg:266 end:285 pic:3' TAAGTGTGGATCCAAGGTTCCTAA 5'& .|| .|| |||.|||| &5' ----GCA---GGGGACCAGGGAT- 3' Rag1 mmu-miR-370 beg:1075 end:1095 pic:3' TGGTCCAAGGTGGGGTCGTCCG 5'& ||| ||..| .|||||| &5' --CAGATTTTAG--TAGCAGG- 3' Rag1 mmu-miR-374star beg:1754 end:1771 pic:3' GAGCCTGTTACTA-TTATGTTGG 5'& ||| .||.||.|| &5' ---------TGAAAGATGCAGCC 3' Rag1 mmu-miR-376astar beg:1328 end:1347 pic:3' TGAGTATCTTCCTCTTAGATGG 5'& |||| .|.|||||| &5' ---CATAATT--GGGATCTAC- 3' Rag1 mmu-miR-379 beg:3205 end:3225 pic:3' GGATGCAAGGTA-TCAGATGGT 5'& .| ||||| |||||||. &5' ---GC-TTCCACGAGTCTACT- 3' Rag1 mmu-miR-384-3p beg:348 end:369 pic:3' TAACACTTGTTAAA--GATCCTTA 5'& | ||| ||||||| &5' -----GGCCAAGCATGCTAGGAA- 3' Rag1 mmu-miR-384-3p beg:697 end:713 pic:3' TAACACTTGTTAAAGATCCTTA 5'& ||.| |||||||. &5' --------CAGTGTCTAGGAG- 3' Rag1 mmu-miR-384-5p beg:1159 end:1181 pic:3' TGTAACGGATCCTTAACAAATGT 5'& ||| ||. || ||||||||. &5' ACA-TGTGTAC--ATTGTTTAT- 3' Rag1 mmu-miR-384-5p beg:815 end:837 pic:3' TGTAACGGATCC---TTAACAAATGT 5'& ||| || ..|||||||. &5' -----GCC-AGCTCTGGTTGTTTAT- 3' Rag1 mmu-miR-431 beg:1074 end:1097 pic:3' ACGTACTGC---CGGACGTTCTGT 5'& |||| ||. |. |||.||| &5' TGCA-GATTTTAGTA-GCAGGAC- 3' Rag1 mmu-miR-432 beg:2803 end:2823 pic:3' GACGGGTGACTAG--ATGAGGTTCT 5'& | |||| ||.|||||| &5' -----CTCTGAGGAATATTCCAAG- 3' Rag1 mmu-miR-432 beg:567 end:589 pic:3' GAC-GGGTGACTAGATGAGGTTCT 5'& | | .. || || .||||||. &5' --GACGTGGTGGCCT-TTCCAAGG 3' Rag1 mmu-miR-434-3p beg:3310 end:3332 pic:3' TCCTCAGCTCACTAC-CAAGTTT 5'& ||| || ||| ||||||| &5' -GGAA--GAAC-ATGAGTTCAAA 3' Rag1 mmu-miR-448 beg:1150 end:1171 pic:3' TAC-CCTGTAGGATGTATACGTT 5'& | ||| ||||.||.| &5' --GAGGAATGA--ACATGTGTA- 3' Rag1 mmu-miR-448 beg:604 end:625 pic:3' TACCCTGTAG-GATGT--ATACGTT 5'& |.|. ||||| |||||| &5' ------CGTTGCTACATTTATGCA- 3' Rag1 mmu-miR-448 beg:545 end:567 pic:3' TACCCTGTAGG---ATGTATACGTT 5'& ||| || |||||.||.|. &5' -----ACAACCCTGTACATGTGTAG 3' Rag1 mmu-miR-449a beg:2039 end:2060 pic:3' TGGTCGATTGTTATGTGACGGT 5'& |||| |.|||||| &5' --CAGCACTGTAAATACTGCC- 3' Rag1 mmu-miR-449a beg:910 end:931 pic:3' TGGTCGATTGTTAT---GTGACGGT 5'& |. ||| .|||||| &5' ----GTCCACATTTTCTTACTGCC- 3' Rag1 mmu-miR-449b beg:910 end:931 pic:3' CGGTCGATTGTTGTGACGGA 5'& ||| .|||||| &5' -CCACATTTTCTTACTGCC- 3' Rag1 mmu-miR-449c beg:2039 end:2060 pic:3' GGTCGAT-CGTTACGTGACGGA 5'& |||| |.|| .|||||| &5' -CAGCACTGTAAA-TACTGCC- 3' Rag1 mmu-miR-449c beg:921 end:931 pic:3' GGTCGATCGTTACGTGACGGA 5'& .|||||| &5' -------------TACTGCC- 3' Rag1 mmu-miR-450a-3p beg:2874 end:2896 pic:3' TACTTACGTTTCGTAGGGGTTA 5'& ||||| .|| ||.||||| &5' -TGAATTT-GAGACTCTCCAAT 3' Rag1 mmu-miR-450b-3p beg:1680 end:1708 pic:3' TACGTACG-TTTTACA-----AGGGTTA 5'& |..||| |||||| |||.|| &5' --GTGTGCAAAAATGACATTATCCTAA- 3' Rag1 mmu-miR-450b-5p beg:2030 end:2053 pic:3' ATAAGTCC-TTGTA-TGACGTTTT 5'& |||| ..|| ||||.||| &5' ---TCAGTTGGCAGCACTGTAAA- 3' Rag1 mmu-miR-450b-5p beg:2192 end:2214 pic:3' ATAAGTCCTT--GTATGACGTTTT 5'& ||||| ||| ||.|.| &5' ----CAGGATTTCATTATGTAGA- 3' Rag1 mmu-miR-452 beg:2938 end:2959 pic:3' CAGAGTCAAAGGAGACGTTTGT 5'& | |.||| |.|||||.|| &5' GGATTAGT----TTTGCAAGCA 3' Rag1 mmu-miR-452 beg:2031 end:2055 pic:3' CAGAGTCAAA-GGA--GACGTTTGT 5'& |||||| | |||.|||.| &5' ---TCAGTTGGCAGCACTGTAAATA 3' Rag1 mmu-miR-452 beg:3033 end:3055 pic:3' CAGAGTCAAAG--GAGACGTTTGT 5'& |||| ||.||.|.||| &5' -----AGTTGATACTTTGTAGACA 3' Rag1 mmu-miR-452 beg:1861 end:1886 pic:3' CAGAGTCAAAGGAG---ACGTTTGT 5'& |||| ||||. || ||||||| &5' -TCTCTGTTTTGTCATTTGCAAAC- 3' Rag1 mmu-miR-453 beg:2892 end:2914 pic:3' ACGTTCGAGTGATACTCCGTTGGA 5'& ||| ||| || || ||.|||. &5' TGCCAGC---CTTTG-GGTAACT- 3' Rag1 mmu-miR-455 beg:293 end:315 pic:3' CACATATACGGGCACCTGACG 5'& |||.|.||| .| ||||. &5' -TGTGTGTGCATGCC-ACTGT 3' Rag1 mmu-miR-465a-3p beg:2249 end:2272 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||.| | |||||.|| &5' -CTGCACACTT-GACCCTGGTC 3' Rag1 mmu-miR-465b-3p beg:1265 end:1283 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||||| .|.||||. &5' ----CTTAGTT---TCTTGATT 3' Rag1 mmu-miR-465b-3p beg:2249 end:2272 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||.| | |||||.|| &5' -CTGCACACTT-GACCCTGGTC 3' Rag1 mmu-miR-465c-3p beg:2249 end:2272 pic:3' AGATGAATCTTTCCGGGACTAG 5'& ||.| | |||||.|| &5' -CTGCACACTT-GACCCTGGTC 3' Rag1 mmu-miR-466f beg:1710 end:1735 pic:3' TGTACGTG-TACGTGTGTGTGCA 5'& |||||. .||||.| .|| | &5' ACATGTTTGGTGCATAGGCAGG- 3' Rag1 mmu-miR-466f-5p beg:1711 end:1735 pic:3' GTACGTG-TACGTGTGTGTGCAT 5'& ||||. .||||.| .|| | &5' CATGTTTGGTGCATAGGCAGG-- 3' Rag1 mmu-miR-466g beg:293 end:317 pic:3' ACACACACGTACACAGACATA 5'& |||||||||||| ||||.| &5' TGTGTGTGCATGCCACTGTGT 3' Rag1 mmu-miR-466h beg:2556 end:2575 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& .|| .|||||||||| &5' ------TAAAAGCATGCACACA 3' Rag1 mmu-miR-466j beg:2561 end:2575 pic:3' AATGTGTGTACGTGTACGTGTGT 5'& .|||||||||| &5' ------------GCATGCACACA 3' Rag1 mmu-miR-466k beg:1820 end:1841 pic:3' AGTGTACATGTACATGTGTGTGT 5'& ||| ||| ||||||||| &5' TCAAAA--ACA--TACACACAC- 3' Rag1 mmu-miR-466l beg:1162 end:1181 pic:3' TTATACACACGTACATAAATAT 5'& |||||| ||| |.||||| &5' ---ATGTGTACAT-TGTTTAT- 3' Rag1 mmu-miR-467b beg:1826 end:1844 pic:3' GTATATGTACGTCCGTGAATG 5'& |||| || |||||| &5' -----ACATACACACACTTA- 3' Rag1 mmu-miR-467e beg:2241 end:2262 pic:3' TGTATATGTACGA-GTGTGAATA 5'& .|.|. | || |||||||. &5' --GTGTGGAGACTGCACACTTG- 3' Rag1 mmu-miR-468 beg:215 end:236 pic:3' GTCTGTGTGCGTG-TAGTCAGTAT 5'& ||| | ||||||.|| &5' -----ACAGGAGAAATCAGTTAT- 3' Rag1 mmu-miR-469 beg:2739 end:2755 pic:3' CCTGTGGTTCTAGTTACTTTCTCCGT 5'& ||.| |.|||||| &5' ------------CAGTT-AGGAGGCA 3' Rag1 mmu-miR-470 beg:265 end:283 pic:3' TGAGTGGTCACGG-TCA-GGTTCTT 5'& ||| .| |||.|.| &5' ---------TGCAGGGGACCAGGGA 3' Rag1 mmu-miR-470 beg:570 end:590 pic:3' TGAGTGGTCA-CGGTCAGGTTCTT 5'& .|| ||| ||||||.. &5' -------GGTGGCCTTTCCAAGGG 3' Rag1 mmu-miR-483star beg:2667 end:2692 pic:3' TTCTGCC-CTCCCCTCCTCACT 5'& ||||. |.||||.||||||. &5' AAGATTTTGGGGGGGGGAGTGG 3' Rag1 mmu-miR-485 beg:2456 end:2476 pic:3' CTTAAGTAG-TGC-CGGTCGGAGA 5'& .|| ||| ||||||||. &5' ------GTCTACGTGCCAGCCTT- 3' Rag1 mmu-miR-485 beg:2885 end:2906 pic:3' CTTAAGTAGTGCCGGTCGGAGA 5'& || || ||||||||.| &5' ----TCTCCAATGCCAGCCTTT 3' Rag1 mmu-miR-488 beg:887 end:910 pic:3' CTGGTTCTT-TGTCGGAAAGTT 5'& .||||. |||| .|||.|| &5' --TCAAGGTTACAGATTTTTAA 3' Rag1 mmu-miR-493 beg:680 end:702 pic:3' GGACCGTGTGTCATCC---TGGAAGT 5'& || | ||||| ||||||| &5' ----GC-CTCAGTATTGTCACCTTCA 3' Rag1 mmu-miR-501-5p beg:572 end:592 pic:3' AAAGTGGGTCCCTGTTTCCTAA 5'& | .||. |||.|||| &5' --TGGCCTTTC--CAAGGGAT- 3' Rag1 mmu-miR-504 beg:2756 end:2779 pic:3' CTATCTCACGTC-TGGTCCCAGA 5'& |.||| | .||||||||| &5' --TGGAGGACTAAGCCAGGGTCT 3' Rag1 mmu-miR-509-5p beg:113 end:131 pic:3' TACTAACGGTGTAAGACCTCAT 5'& |. |||| .||||||. &5' ------GTGACATGTTGGAGTG 3' Rag1 mmu-miR-539 beg:1257 end:1279 pic:3' TGTGTGGTTCCT-ATTAAAGAGG 5'& || ||||| ||.|||||. &5' --AC-CCAAGCCTTAGTTTCTT- 3' Rag1 mmu-miR-544 beg:2651 end:2674 pic:3' CTCGAACG-ATTTTTACGTCTTA 5'& ||. ||| |.||||| ||| &5' -AGTATGCATGAAAATAAAGA-- 3' Rag1 mmu-miR-544 beg:353 end:373 pic:3' CTCGAACGATTTTTACGTCTTA 5'& ||| |||||..|| |||| &5' -AGCATGCTAGGAA---AGAA- 3' Rag1 mmu-miR-568 beg:605 end:626 pic:3' CACACAT--ATGTAAATATGTA 5'& || |||||||||.||| &5' ----GTTGCTACATTTATGCAT 3' Rag1 mmu-miR-574-5p beg:1821 end:1844 pic:3' TGTGTGAGTGTGTGTGTGTGAGT 5'& || |||.|||||||||.| &5' ---CAAAAACATACACACACTTA 3' Rag1 mmu-miR-652 beg:304 end:322 pic:3' GTGTTGG-GATCACCGCGGTAA 5'& .|| || || |.||||| &5' ----GCCACT-GT-GTGCCAT- 3' Rag1 mmu-miR-654-3p beg:3036 end:3056 pic:3' TTCCACTACCAGTCGTCTGTAT 5'& |||| |. |.|||||| &5' ----TGATACTTTGTAGACAT- 3' Rag1 mmu-miR-666-5p beg:2856 end:2878 pic:3' CCGAGAGTGT-CGACACGGGCGA 5'& .|.||||| |||| |..| &5' --TTTTCACAGGCTGACCTTG-- 3' Rag1 mmu-miR-667 beg:706 end:727 pic:3' GAACCCGACCCACCGT----CCACAGT 5'& || ||. ||||||| &5' ---------GGAGGTCATCTGGTGTCA 3' Rag1 mmu-miR-669g beg:3245 end:3267 pic:3' TAGTACAGTTGTG----TATGTTACGT 5'& .|||| ||.|||||.| &5' --------GACACCAGGATGCAATGTA 3' Rag1 mmu-miR-669h-3p beg:2652 end:2664 pic:3' ACACGTACACACATATACGTAT 5'& .|||||||. &5' -------------GTATGCATG 3' Rag1 mmu-miR-669h-5p beg:610 end:626 pic:3' CGTGAGTTGATATGTGGGTACGTA 5'& ||||...|||||| &5' -----------TACATTTATGCAT 3' Rag1 mmu-miR-669i beg:296 end:319 pic:3' CATACGTACACACATATACGT 5'& ||.|||||| |.|.||| &5' GTGTGCATGCCACTGTGTGC- 3' Rag1 mmu-miR-669i beg:2958 end:2981 pic:3' CATACGTACAC---ACATATACGT 5'& ||. || |||.||||| &5' ---TGTTTGATACATGTGTATGC- 3' Rag1 mmu-miR-669j beg:295 end:319 pic:3' ACAAACGTACACTCATATACGT 5'& ||| |||||| |.|.||| &5' TGTGTGCATGCCACTGTGTGC- 3' Rag1 mmu-miR-669j beg:1058 end:1080 pic:3' ACAAA-CGTACACTCATATACGT 5'& ||| |. |||.|.|||| &5' -GTTGAGTTTC--AGTGTGTGCA 3' Rag1 mmu-miR-669j beg:2958 end:2981 pic:3' ACAAACGTACACTCATATACGT 5'& |||||| ||.||||| &5' TGTTTGATACAT-GTGTATGC- 3' Rag1 mmu-miR-670 beg:146 end:165 pic:3' AAGTGGTGTATGTGAGTCCCTA 5'& ||||| . |||||||| &5' -TCACCT-----GGTCAGGGAT 3' Rag1 mmu-miR-671-3p beg:2427 end:2444 pic:3' CCACCTCGGGACTCTTGGCCT 5'& ||.|||| |||.||| &5' ------GCTCTGA-AACTGGA 3' Rag1 mmu-miR-672 beg:2565 end:2587 pic:3' AGTGTGTGTCATGTGGTTGGAGT 5'& .||||||| |..|||. || &5' --GCACACAG-ATGCCAGAG-CA 3' Rag1 mmu-miR-673-3p beg:1970 end:1988 pic:3' CCACGTGTCTTGAGTC---GGGGCCT 5'& ||| |||.||| &5' -----------CTCCTACTCCCTGGA 3' Rag1 mmu-miR-674 beg:578 end:600 pic:3' ATGTGGTGAGGG----TAGAGTCACG 5'& .||| |||||||||| &5' -------TTCCAAGGGATCTCAGTGC 3' Rag1 mmu-miR-679 beg:1388 end:1413 pic:3' TGGTTCTCAGTGGAGTGTCAGG 5'& |. .| |||||.|| |||. &5' ATGGAAAGTCATCTGTTTGTCT 3' Rag1 mmu-miR-679 beg:846 end:869 pic:3' TGGTTCTCAGTGGAGTGTCAGG 5'& |..|||||||| .|.|.|| || &5' ATTAAGAGTCA-TTTATAG-CC 3' Rag1 mmu-miR-680 beg:1994 end:2015 pic:3' GGGGGTACAGTCGTCTACGGG 5'& | |. | |.|||||||. &5' -CGCTT--TTGGTAGATGCCT 3' Rag1 mmu-miR-682 beg:1463 end:1481 pic:3' GTCTGAAGTGA-CACTGACGTC 5'& | || |||.|||||| &5' -------CTCTAGTGGCTGCAG 3' Rag1 mmu-miR-682 beg:2237 end:2257 pic:3' GTCTGAAGTGACA---CTGACGTC 5'& ||| ||| ||||||| &5' ------TCAGTGTGGAGACTGCA- 3' Rag1 mmu-miR-682 beg:2489 end:2508 pic:3' GTCTGAAGTGACACTGACGTC 5'& .||| || |||||||.|| &5' -GGAC--CA--GTGACTGTAG 3' Rag1 mmu-miR-683 beg:1311 end:1329 pic:3' CTCCTGTGTCGAATGTCGTCC 5'& |.||||. .|||||| &5' ----ATACAGTA-GCAGCAG- 3' Rag1 mmu-miR-686 beg:2733 end:2755 pic:3' AGAAGTGGCAGACCCTTCGTTA 5'& ||| ||| ||. |||.|||. &5' TCTACACAGTTA-GGAGGCAG- 3' Rag1 mmu-miR-687 beg:2263 end:2279 pic:3' AGTAACGACGTAAGGTCCTATC 5'& ||| ||.|||||| &5' ------CTGG--TCTAGGATA- 3' Rag1 mmu-miR-689 beg:2475 end:2496 pic:3' CCTGGGGCGGCTCGCCCCTGC 5'& .|| ||| |.|||||| &5' --GCCGCGCACTGTGGGGAC- 3' Rag1 mmu-miR-690 beg:851 end:871 pic:3' AAACCAACACTCGG-----ATCGGAAA 5'& |||.| ||||||| &5' ---------GAGTCATTTATAGCCTT- 3' Rag1 mmu-miR-702 beg:2683 end:2708 pic:3' CTCGCCCCA--TTTCCCACCCGT 5'& |||.||||| |||| ||||. &5' GAGTGGGGTTGAAAGTATGGGT- 3' Rag1 mmu-miR-704 beg:1707 end:1721 pic:3' GATCCTCGTCTCGTGTACAGA 5'& .||||||||.| &5' ----------GGCACATGTTT 3' Rag1 mmu-miR-705 beg:1961 end:1981 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& || || | |||||.||. &5' --CCTGCCAC-CCTCCTACT 3' Rag1 mmu-miR-705 beg:2373 end:2394 pic:3' ACGGGTGGGGTGGAGGGTGG 5'& ||||||||||| || || &5' --CCCACCCCACCCCCTGCC 3' Rag1 mmu-miR-706 beg:377 end:397 pic:3' AAAAAACTCTGTCCCAAAGAGA 5'& ||| |.|| |||||.|.| &5' ----TTG-GGCATGGTTTTTTT 3' Rag1 mmu-miR-706 beg:525 end:547 pic:3' AAAAAACTCTGT--C-CCAAAGAGA 5'& ||| | | ||||||||| &5' ------GAGCCTTTGAGGTTTCTCT 3' Rag1 mmu-miR-708star beg:1659 end:1679 pic:3' GATCTTCG-AGTGTCAGATCAAC 5'& .||| | .| |.|||||| &5' ----GAGCTTTGTAATTTAGTTG 3' Rag1 mmu-miR-708star beg:2992 end:3012 pic:3' GATCTTCGAGTGTC----AGATCAAC 5'& | .||| ||||||| &5' --------TGGCAGTTGTTCTAGTT- 3' Rag1 mmu-miR-708star beg:811 end:832 pic:3' GATCTTCGAGTGTC-AGATCAAC 5'& |||| ||| ||| |||.|||| &5' CTAG-AGC---CAGCTCTGGTTG 3' Rag1 mmu-miR-709 beg:1015 end:1033 pic:3' AGGAGGACGGAGACGGAGG 5'& ||.|||| |.|.|| | &5' TCTTCCT-CTTTTGGC--- 3' Rag1 mmu-miR-713 beg:585 end:601 pic:3' CGACACACGGAAGTCACGT 5'& | .| |||||||| &5' -----GGATC-TCAGTGCA 3' Rag1 mmu-miR-713 beg:2228 end:2247 pic:3' CGACACACGGAAGTCACGT 5'& .||| || ||||||. &5' -TTGTTT-CCCTCAGTGT- 3' Rag1 mmu-miR-713 beg:687 end:706 pic:3' CGACACACGGAAGTCACGT 5'& .||| |||||||||. &5' -TTGTCA-CCTTCAGTGT- 3' Rag1 mmu-miR-743a beg:1372 end:1387 pic:3' AGATGAGTCGAACCACAGAAAG 5'& |||| ||||||| &5' -------AGCTA--TGTCTTT- 3' Rag1 mmu-miR-743b-3p beg:1372 end:1387 pic:3' AGATAAGTCGTACTACAGAAAG 5'& ||| |||||||| &5' -------AGCT--ATGTCTTT- 3' Rag1 mmu-miR-743b-3p beg:2593 end:2606 pic:3' AGATAAGTCGTACTACAGAAAG 5'& |||||||||| &5' ------------GATGTCTTTC 3' Rag1 mmu-miR-744star beg:2024 end:2046 pic:3' TCCAACTCCAATCA-----CCGTTGTC 5'& ||||||| ||||.|| &5' -------GGTTAGTCAGTTGGCAGCA- 3' Rag1 mmu-miR-758 beg:890 end:903 pic:3' ATCACCTGGTCCAGTGTTT 5'& ||||.|||.| &5' ---------AGGTTACAGA 3' Rag1 mmu-miR-762 beg:2884 end:2904 pic:3' CGAGACAGGGCCGGGGTCGGGG 5'& ||| ||| . ||||||.. &5' -CTC--TCCAA-TGCCAGCCTT 3' Rag1 mmu-miR-764-5p beg:2911 end:2933 pic:3' TCCTCCTGTACACTCGTGG 5'& .||| ||||| || | || &5' GGGATGACATATGTGTGCC 3' Rag1 mmu-miR-764-5p beg:705 end:726 pic:3' TCCTCCTGTACACTCGTGG 5'& |||||| ||| || | .| &5' AGGAGGTCATCTG-GTGTC 3' Rag1 mmu-miR-7a beg:1003 end:1024 pic:3' TGTTGTTTTAGTGATCAGAAGGT 5'& ..| || |||||||| &5' --GGCTT--TCTAAAGTCTTCC- 3' Rag1 mmu-miR-7b beg:1003 end:1024 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& ..| || ||||||||| &5' --GGCTT--TCTAAAGTCTTCC- 3' Rag1 mmu-miR-7b beg:648 end:671 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& ||. |||||||. |.||||| &5' -CAG-AAAATCATCC-TTTTCCA 3' Rag1 mmu-miR-7b beg:2996 end:3016 pic:3' TGTTGTTTT--AGTGTTCAGAAGGT 5'& .||. || |||.|||| &5' ---GCAGTTGTTCT--AGTTTTCC- 3' Rag1 mmu-miR-7b beg:2150 end:2174 pic:3' TGTTGTTTTAGTGTTCAGAAGGT 5'& .||. |.|||||| ||| .| &5' -TAATCAGATCACAT-TCTGATA 3' Rag1 mmu-miR-871 beg:977 end:1000 pic:3' GTACTGACCGTG-ATTAGACTTAT 5'& .|||| || |..|.|||||| &5' TATGAA----ACATGGTTTGAATA 3' Rag1 mmu-miR-872 beg:1936 end:1959 pic:3' GGACT--TGATTGTTCATTGGAA 5'& ||| |||||.|| |.|. &5' -CTGTGCACTAATAAACAGCT-- 3' Rag1 mmu-miR-877star beg:2674 end:2694 pic:3' ACCCTCCTCCCTCTTCTCCTGT 5'& |||| ||.||||| |.|| &5' TGGG-GGGGGGAGT-GGGG--- 3' Rag1 mmu-miR-879 beg:1003 end:1022 pic:3' CCGAATCTCGATATTCGGAGA 5'& ||||| ||| |||.||. &5' GGCTTT---CTA-AAGTCTT- 3' Rag1 mmu-miR-879 beg:2833 end:2855 pic:3' CCGAAT-CTCGATATTCGGAGA 5'& |.|| |||||| |.|.||| &5' -GTTTTTGAGCTA-AGGTCTC- 3' Rag1 mmu-miR-879 beg:515 end:536 pic:3' CCGAATCTCGATA--TTCGGAGA 5'& ||| .|| .|||||.| &5' -----AGATTTAAAGGAGCCTTT 3' Rag1 mmu-miR-880 beg:1125 end:1136 pic:3' AGATGAGTCTCTCCTACCTCAT 5'& |||||.|| &5' -------------GATGGGGT- 3' Rag1 mmu-miR-881 beg:1631 end:1652 pic:3' AGATAAGTCTTTTC--TGTGTCAA 5'& |||| ||||||| &5' -----TCAGTCTTCATACACAGT- 3' Rag1 mmu-miR-883a-3p beg:1467 end:1484 pic:3' TATGACTCTCGACAACGTCAAT 5'& ||. | |||||||| &5' --------AGTGGCTGCAGTTA 3' Rag1 mmu-miR-883a-3p beg:420 end:441 pic:3' TATGACTCTCGACAACGTCAAT 5'& .|.|||||| || ||||||| &5' GTGCTGAGATCTA-TGCAGTT- 3' Rag1 mmu-miR-883b-3p beg:1468 end:1484 pic:3' TATGACTCTCTACA-ACGTCAAT 5'& .|| |||||||| &5' ----------GTGGCTGCAGTTA 3' Rag1 mmu-miR-883b-3p beg:420 end:441 pic:3' TATGACTCTCTACAACGTCAAT 5'& .|.|||||| ||||||| &5' GTGCTGAGATCTA-TGCAGTT- 3' Rag1 mmu-miR-883b-5p beg:579 end:598 pic:3' ACTGACGATGGGTA----AGAGTCAT 5'& .||| |||||||. &5' ---------TCCAAGGGATCTCAGTG 3' Rag1 mmu-miR-9 beg:1638 end:1662 pic:3' AGTATGTCGATCTATTGGTTTCT 5'& ||||||| | || |.|||||| &5' TCATACA-C-AGTATATCAAAGA 3' Rag1 mmu-miR-93 beg:1985 end:2003 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& |||.| .||.|||| &5' ------GCATGCT-GGCGCTTT- 3' Rag1 mmu-miR-93 beg:2408 end:2425 pic:3' GATGGACGTGCTTGTCGTGAAAC 5'& |.|| ||. |||.||| &5' ------GTAC-AAT-GCATTTT- 3' Rag1 mmu-miR-96 beg:1086 end:1108 pic:3' TCGTTTTTACACGATCACGGTTT 5'& ||||..| |||||| ||||. &5' AGCAGGACTGTGCT-GTGCT--- 3' Rag1 mmu-miR-96 beg:2456 end:2472 pic:3' TCGTTTTTACACGAT-CACGGTTT 5'& || ||| ||||||. &5' ---------GT-CTACGTGCCAG- 3' Rag1 mmu-miR-99bstar beg:2107 end:2123 pic:3' GCCTGGGTGTCTGTGCTCGAAC 5'& |||.| .|.||||| &5' --GACTC-------TGGGCTTG 3' Rag1 mmu-miR-9star beg:2936 end:2953 pic:3' TGAAAGCCAATAGATCGAAATA 5'& ||| .|||.|||. &5' -----CGGGA--TTAGTTTTG- 3' Rag1 mmu-miR-669h-3p beg:607 end:627 pic:3' ACACGTACACACATATACGTAT 5'& ||| |||||||| &5' --TGCTACATT---TATGCATA 3' Rag1 mmu-miR-669k beg:607 end:627 pic:3' AACGTACGCACAT-ATACGTAT 5'& |. ||| |||||||| &5' --GT-TGCTACATTTATGCATA 3' Rag1 mmu-miR-325 beg:235 end:251 pic:3' AACTATCCTCCACGAGTTATTT 5'& ||| ||||||||| &5' ------GGAA--GCTCAATAA- 3' Rag1 mmu-miR-466h beg:2245 end:2260 pic:3' ATGTGTGTTCGTGTACGTGTGT 5'& .|| || ||||||| &5' -------GAG-AC-TGCACAC- 3' Rag1 mmu-miR-20astar beg:2824 end:2846 pic:3' GAAATTCA-CGAGCATTACGTCA 5'& |||||||| |.|. |.| || &5' CTTTAAGTAGTTTTTGA-GC--- 3' Rag1 mmu-miR-20astar beg:3070 end:3094 pic:3' GAAATTCAC-GA-GCATTACGTCA 5'& |||||||| || .|||| ||| &5' CTTTAAGTATCTATGTAA-GCA-- 3'

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score Rag1 RAID00113355 mmu-miR-5622-3p miRNA MIMAT0022372 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00127225 mmu-miR-290b-5p miRNA MIMAT0029900 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00134644 mmu-miR-486a-5p miRNA MIMAT0003130 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00226341 mmu-miR-669k-5p miRNA MIMAT0017323 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00230844 mmu-miR-181c-5p miRNA MIMAT0000674 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00256533 mmu-miR-7676-5p miRNA MIMAT0029860 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00260464 mmu-miR-7651-5p miRNA MIMAT0029804 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00285952 mmu-miR-218-1-3p miRNA MIMAT0004665 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00328251 mmu-miR-200b-3p miRNA MIMAT0000233 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00366621 mmu-miR-138-5p miRNA MIMAT0000150 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00396469 mmu-miR-669k-3p miRNA MIMAT0005831 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00402146 mmu-miR-544-3p miRNA MIMAT0004941 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00437361 mmu-miR-5104 miRNA MIMAT0020611 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00541482 mmu-miR-7b-5p miRNA MIMAT0000678 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00586692 mmu-miR-7017-5p miRNA MIMAT0027938 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00628026 mmu-miR-7016-3p miRNA MIMAT0027937 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00631342 mmu-miR-148b-3p miRNA MIMAT0000580 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00646392 mmu-miR-134-5p miRNA MIMAT0000146 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00684488 mmu-miR-1264-3p miRNA MIMAT0014803 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00697234 mmu-miR-429-3p miRNA MIMAT0001537 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00698672 mmu-miR-489-3p miRNA MIMAT0003112 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00748442 mmu-miR-324-5p miRNA MIMAT0000555 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00780455 mmu-miR-33-5p miRNA MIMAT0000667 Rag1 mRNA 19373 Prediction 0.2202 Rag1 RAID00821768 mmu-miR-7655-3p miRNA MIMAT0029817 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00852107 mmu-miR-6998-5p miRNA MIMAT0027898 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00867235 mmu-miR-466l-3p miRNA MIMAT0005830 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00930627 mmu-miR-1264-5p miRNA MIMAT0014802 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00931114 mmu-miR-7060-3p miRNA MIMAT0028025 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID00950189 mmu-miR-7675-3p miRNA MIMAT0029859 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01003603 mmu-miR-490-3p miRNA MIMAT0003780 Rag1 mRNA 19373 Prediction 0.2202 Rag1 RAID01077242 mmu-miR-1191b-3p miRNA MIMAT0029867 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01111773 mmu-miR-411-5p miRNA MIMAT0004747 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01218667 mmu-miR-7041-5p miRNA MIMAT0027986 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01338142 mmu-miR-217-5p miRNA MIMAT0000679 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01388278 mmu-miR-669h-3p miRNA MIMAT0005842 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01414991 mmu-miR-873a-5p miRNA MIMAT0004936 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01440095 mmu-miR-296-3p miRNA MIMAT0004576 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01458105 mmu-miR-7006-5p miRNA MIMAT0027916 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01556153 mmu-miR-147-5p miRNA MIMAT0017269 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01564876 mmu-miR-6959-5p miRNA MIMAT0027818 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01569691 mmu-miR-8095 miRNA MIMAT0031396 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01604047 mmu-miR-881-3p miRNA MIMAT0004846 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01638687 mmu-miR-488-3p miRNA MIMAT0003450 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01685737 mmu-miR-376c-3p miRNA MIMAT0003183 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01688579 mmu-miR-670-5p miRNA MIMAT0003736 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01818312 mmu-miR-410-3p miRNA MIMAT0001091 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01895477 mmu-miR-7210-3p miRNA MIMAT0028389 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01924323 mmu-miR-6930-3p miRNA MIMAT0027761 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID01958932 mmu-miR-551b-5p miRNA MIMAT0017236 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02017521 mmu-miR-181d-5p miRNA MIMAT0004324 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02023096 mmu-miR-496b miRNA MIMAT0025158 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02160395 mmu-miR-148a-3p miRNA MIMAT0000516 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02191213 mmu-miR-374b-5p miRNA MIMAT0003727 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02199777 mmu-miR-425-5p miRNA MIMAT0004750 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02272544 mmu-miR-7661-5p miRNA MIMAT0029828 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02343472 mmu-miR-182-5p miRNA MIMAT0000211 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02479057 mmu-miR-29a-5p miRNA MIMAT0004631 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02516095 mmu-miR-378a-3p miRNA MIMAT0003151 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02570567 mmu-miR-150-5p miRNA MIMAT0000160 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02599989 mmu-miR-149-5p miRNA MIMAT0000159 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02610071 mmu-miR-302a-5p miRNA MIMAT0004579 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02632311 mmu-miR-7679-5p miRNA MIMAT0029872 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02659198 mmu-miR-8113 miRNA MIMAT0031419 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02664080 mmu-miR-129-5p miRNA MIMAT0000209 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02687079 mmu-miR-7012-5p miRNA MIMAT0027928 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02687342 mmu-miR-342-3p miRNA MIMAT0000590 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02705352 mmu-miR-186-5p miRNA MIMAT0000215 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02715706 mmu-miR-694 miRNA MIMAT0003474 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02794466 mmu-miR-340-5p miRNA MIMAT0004651 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02945229 mmu-miR-153-3p miRNA MIMAT0000163 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID02994361 mmu-miR-671-5p miRNA MIMAT0003731 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03003566 mmu-miR-8119 miRNA MIMAT0031425 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03111367 mmu-miR-3110-3p miRNA MIMAT0014952 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03141228 mmu-miR-378d miRNA MIMAT0025167 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03184149 mmu-miR-6992-5p miRNA MIMAT0027886 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03192239 mmu-miR-7057-5p miRNA MIMAT0028018 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03229072 mmu-miR-181b-5p miRNA MIMAT0000673 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03263061 mmu-miR-200c-3p miRNA MIMAT0000657 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03394498 mmu-miR-6929-3p miRNA MIMAT0027759 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03438086 mmu-miR-183-5p miRNA MIMAT0000212 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03475210 mmu-miR-7232-5p miRNA MIMAT0028432 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03515795 mmu-miR-7a-5p miRNA MIMAT0000677 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03533900 mmu-miR-142a-3p miRNA MIMAT0000155 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03571077 mmu-miR-144-3p miRNA MIMAT0000156 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03623205 mmu-miR-6954-5p miRNA MIMAT0027808 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03635369 mmu-miR-7083-3p miRNA MIMAT0028073 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03637963 mmu-miR-206-5p miRNA MIMAT0017004 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03655625 mmu-miR-6928-3p miRNA MIMAT0027757 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03669559 mmu-miR-6953-3p miRNA MIMAT0027807 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03721663 mmu-miR-361-5p miRNA MIMAT0000704 Rag1 mRNA 19373 Prediction 0.2202 Rag1 RAID03751116 mmu-miR-325-3p miRNA MIMAT0004640 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03771406 mmu-miR-382-3p miRNA MIMAT0004691 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03821715 mmu-miR-145a-5p miRNA MIMAT0000157 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID03879434 mmu-miR-590-3p miRNA MIMAT0004896 Rag1 mRNA 19373 Prediction 0.1828 Rag1 RAID04028221 mmu-miR-155-5p miRNA MIMAT0000165 Rag1 mRNA 19373 Prediction 0.2202