iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-028416

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

V(D)J recombination-activating protein 1

Genbank Nucleotide ID

AL935203

Gene Name

rag1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000052122.4	ENSDART00000142917.2	ENSDARP00000120100.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	59.04	0.00e+00	1210.00	IUUC-Hsa-045964
E3 activity/RING/RING	58.81	0.00e+00	1209.00	IUUC-Mmu-064297

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Danio rerio

Protein Sequence
(Fasta)

MEKGRWSSED APRASMPDEL SHPKFSEWKF KLFRVRSMEK APVQNETPVE KENQPELAME 60
KTSSQGSVMR LCFGGKSKEN VESARGRVDL KLQEIDTHMN LLKNMCRLCG IAIQKAKGPS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAGCACCAA GCAACTGAGA TCCAGCCAGG CACTCTTAGA TAGAGGGCCT GAAAGACATC 60
CACACTCAAA AACGCACTAG GCCTCCCTTG TGCCCCCATG CGGAAAGGCC CCAGGGGAGA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0233--DNA recombination
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR024627--RAG1
IPR019485--RAG1_Znf
IPR023336--RAG_nonamer-bd_dom
IPR018957--Znf_C3HC4_RING-type
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51487--NBD
PS51765--ZF_RAG1
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF12940--RAG1
PF00097--zf-C3HC4

SMART

SM00184--RING

Gene Ontology

GO:0005634--C:nucleus
GO:0004519--F:endonuclease activity
GO:0043565--F:sequence-specific DNA binding
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0033151--P:V(D)J recombination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001206	Ailuropoda melanoleuca	58.66	0.00e+00	1206.00
IUUC-Apl-003271	Anas platyrhynchos	59.32	0.00e+00	1251.00
IUUC-Aca-004400	Anolis carolinensis	58.09	0.00e+00	1225.00
IUUC-Ame-011295	Astyanax mexicanus	81.00	0.00e+00	1743.00
IUUC-Bta-012421	Bos taurus	59.64	0.00e+00	1243.00
IUUC-Cja-019891	Callithrix jacchus	57.83	0.00e+00	1192.00
IUUC-Cfa-020740	Canis familiaris	58.57	0.00e+00	1199.00
IUUC-Cpo-021800	Cavia porcellus	58.85	0.00e+00	1192.00
IUUC-Csa-024203	Chlorocebus sabaeus	57.22	0.00e+00	1041.00
IUUC-Dno-029101	Dasypus novemcinctus	58.43	0.00e+00	1184.00
IUUC-Eca-033385	Equus caballus	59.13	0.00e+00	1214.00
IUUC-Fca-036545	Felis catus	58.61	0.00e+00	1211.00
IUUC-Fal-037208	Ficedula albicollis	58.25	0.00e+00	1229.00
IUUC-Gmo-039622	Gadus morhua	67.25	0.00e+00	1439.00
IUUC-Gga-041182	Gallus gallus	59.92	0.00e+00	1223.00
IUUC-Gac-041682	Gasterosteus aculeatus	72.38	0.00e+00	1563.00
IUUC-Ggo-044510	Gorilla gorilla	58.52	0.00e+00	1201.00
IUUC-Hsa-045964	Homo sapiens	59.04	0.00e+00	1208.00
IUUC-Itr-048862	Ictidomys tridecemlineatus	57.74	0.00e+00	1197.00
IUUC-Lch-050041	Latimeria chalumnae	61.46	0.00e+00	1252.00
IUUC-Loc-052464	Lepisosteus oculatus	71.10	0.00e+00	1519.00
IUUC-Laf-053544	Loxodonta africana	56.60	0.00e+00	1187.00
IUUC-Mcc-054867	Macaca mulatta	58.55	0.00e+00	1197.00
IUUC-Meu-055986	Macropus eugenii	56.25	0.00e+00	1075.00
IUUC-Mga-059262	Meleagris gallopavo	59.87	0.00e+00	1225.00
IUUC-Mdo-062686	Monodelphis domestica	57.90	0.00e+00	1222.00
IUUC-Mmu-064297	Mus musculus	58.81	0.00e+00	1234.00
IUUC-Mpu-066027	Mustela putorius furo	58.88	0.00e+00	1190.00
IUUC-Mlu-067885	Myotis lucifugus	58.38	0.00e+00	1217.00
IUUC-Nle-070073	Nomascus leucogenys	58.39	0.00e+00	1204.00
IUUC-Ont-071400	Oreochromis niloticus	74.36	0.00e+00	1619.00
IUUC-Oan-072920	Ornithorhynchus anatinus	77.41	0.00e+00	648.00
IUUC-Ocu-074616	Oryctolagus cuniculus	59.04	0.00e+00	1196.00
IUUC-Ola-086828	Oryzias latipes	73.06	0.00e+00	1575.00
IUUC-Oga-088675	Otolemur garnettii	71.53	2.00e-114	404.00
IUUC-Oar-090380	Ovis aries	58.87	0.00e+00	1249.00
IUUC-Ptr-090648	Pan troglodytes	58.76	0.00e+00	1206.00
IUUC-Pan-092036	Papio anubis	58.65	0.00e+00	1197.00
IUUC-Psi-093130	Pelodiscus sinensis	59.15	0.00e+00	1258.00
IUUC-Pfo-097273	Poecilia formosa	73.16	0.00e+00	1583.00
IUUC-Pca-100134	Procavia capensis	69.35	0.00e+00	1056.00
IUUC-Rno-105632	Rattus norvegicus	58.96	0.00e+00	1241.00
IUUC-Sha-107238	Sarcophilus harrisii	58.29	0.00e+00	1237.00
IUUC-Sar-113591	Sorex araneus	73.70	3.00e-170	592.00
IUUC-Ssc-115720	Sus scrofa	58.04	0.00e+00	1201.00
IUUC-Tgu-117030	Taeniopygia guttata	58.62	0.00e+00	1245.00
IUUC-Tru-117669	Takifugu rubripes	71.27	0.00e+00	1454.00
IUUC-Tsy-119578	Tarsius syrichta	58.04	0.00e+00	1192.00
IUUC-Tni-120073	Tetraodon nigroviridis	71.31	0.00e+00	1522.00
IUUC-Tbe-128029	Tupaia belangeri	46.26	7.00e-138	485.00
IUUC-Ttr-128677	Tursiops truncatus	70.80	3.00e-175	609.00
IUUC-Vpa-130346	Vicugna pacos	74.94	0.00e+00	695.00
IUUC-Xtr-132442	Xenopus tropicalis	73.98	1.00e-85	308.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence